Wall clock time and date at job start Tue Mar 31 2020 13:04:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 O 1.45193 * 109.47660 * 2 1
4 4 C 1.34709 * 117.00271 * 179.97438 * 3 2 1
5 5 O 1.21466 * 120.00022 * 0.02562 * 4 3 2
6 6 C 1.47729 * 119.99994 * 179.97438 * 4 3 2
7 7 C 1.39630 * 120.14836 * 180.02562 * 6 4 3
8 8 C 1.37948 * 119.84526 * 179.97438 * 7 6 4
9 9 C 1.38369 * 120.14881 * 359.97438 * 8 7 6
10 10 C 1.50702 * 119.84383 * 179.72155 * 9 8 7
11 11 O 1.42892 * 109.47077 * 90.00139 * 10 9 8
12 12 C 1.42900 * 114.00108 * 180.02562 * 11 10 9
13 13 H 1.09005 * 110.88868 * 26.11841 * 12 11 10
14 14 C 1.55152 * 111.00719 * 150.00093 * 12 11 10
15 15 C 1.54322 * 102.94556 * 153.57582 * 14 12 11
16 16 N 1.47023 * 107.26819 * 337.80632 * 15 14 12
17 17 C 1.36941 * 125.64486 * 178.98737 * 16 15 14
18 18 H 1.08000 * 119.99422 * 174.78381 * 17 16 15
19 19 C 1.38807 * 120.00087 * 354.78920 * 17 16 15
20 20 N 1.31614 * 120.00395 * 7.05204 * 19 17 16
21 21 Si 1.86806 * 119.99835 * 187.05681 * 19 17 16
22 22 H 1.48498 * 109.47366 * 94.98344 * 21 19 17
23 23 H 1.48502 * 109.47108 * 214.98431 * 21 19 17
24 24 H 1.48504 * 109.46906 * 334.98238 * 21 19 17
25 25 C 1.47419 * 108.70282 * 358.93800 * 16 15 14
26 26 C 1.38361 * 120.30381 * 0.02562 * 9 8 7
27 27 C 1.37938 * 120.15398 * 359.97438 * 26 9 8
28 28 H 1.08999 * 109.47624 * 180.02562 * 1 2 3
29 29 H 1.08998 * 109.47016 * 300.00577 * 1 2 3
30 30 H 1.09000 * 109.46827 * 60.00263 * 1 2 3
31 31 H 1.08998 * 109.47016 * 239.99423 * 2 1 3
32 32 H 1.09005 * 109.47065 * 120.00129 * 2 1 3
33 33 H 1.08001 * 120.07441 * 359.95314 * 7 6 4
34 34 H 1.07997 * 119.92338 * 179.97438 * 8 7 6
35 35 H 1.08998 * 109.46949 * 210.00352 * 10 9 8
36 36 H 1.09005 * 109.46908 * 329.99851 * 10 9 8
37 37 H 1.09004 * 110.72077 * 271.93592 * 14 12 11
38 38 H 1.08998 * 110.72468 * 35.20999 * 14 12 11
39 39 H 1.09000 * 109.88625 * 97.22565 * 15 14 12
40 40 H 1.09005 * 109.88171 * 218.39049 * 15 14 12
41 41 H 0.97005 * 120.00373 * 180.02562 * 20 19 17
42 42 H 1.08997 * 110.37239 * 265.28775 * 25 16 15
43 43 H 1.09000 * 110.36587 * 142.96881 * 25 16 15
44 44 H 1.08001 * 119.92141 * 180.02562 * 26 9 8
45 45 H 1.08004 * 120.07831 * 180.02562 * 27 26 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0141 1.3688 0.0000
4 6 3.3496 1.5453 0.0005
5 8 4.0895 0.5820 0.0005
6 6 3.9143 2.9104 0.0000
7 6 5.2981 3.0968 0.0000
8 6 5.8187 4.3743 -0.0010
9 6 4.9729 5.4694 -0.0026
10 6 5.5490 6.8620 0.0026
11 8 5.7369 7.3047 -1.3429
12 6 6.2826 8.6210 -1.4509
13 1 6.8689 8.8724 -0.5670
14 6 7.1313 8.7672 -2.7414
15 6 7.0442 10.2781 -3.0432
16 7 5.8398 10.7885 -2.3719
17 6 5.4142 12.0901 -2.3772
18 1 4.4695 12.3511 -1.9235
19 6 6.1969 13.0738 -2.9658
20 7 7.2775 12.7400 -3.6389
21 14 5.7165 14.8717 -2.8024
22 1 6.4435 15.4762 -1.6573
23 1 6.0707 15.5941 -4.0506
24 1 4.2534 14.9738 -2.5695
25 6 5.1657 9.6668 -1.6932
26 6 3.6007 5.2918 -0.0026
27 6 3.0667 4.0200 -0.0016
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3633 0.5139 0.8899
30 1 -0.3633 0.5138 -0.8900
31 1 1.8933 -0.5139 -0.8899
32 1 1.8933 -0.5139 0.8900
33 1 5.9593 2.2429 0.0012
34 1 6.8888 4.5200 -0.0006
35 1 4.8633 7.5369 0.5148
36 1 6.5080 6.8564 0.5207
37 1 8.1640 8.4693 -2.5596
38 1 6.6987 8.1858 -3.5555
39 1 7.9277 10.7852 -2.6555
40 1 6.9648 10.4373 -4.1186
41 1 7.8247 13.4275 -4.0499
42 1 4.3873 9.2495 -2.3318
43 1 4.7426 9.9967 -0.7443
44 1 2.9463 6.1509 -0.0043
45 1 1.9954 3.8827 -0.0020
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001222163285.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:04:18
Heat of formation + Delta-G solvation = -98.503230 kcal
Electronic energy + Delta-G solvation = -25437.906178 eV
Core-core repulsion = 21613.570464 eV
Total energy + Delta-G solvation = -3824.335714 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.69692 -40.33292 -39.53551 -37.76618 -37.41980 -34.33549 -33.35820 -32.42459
-32.00274 -31.04574 -28.99564 -27.79678 -26.24820 -24.73331 -23.68778 -23.29756
-22.05528 -21.88797 -21.66622 -19.16899 -18.95848 -18.21810 -17.87577 -17.63476
-16.84190 -16.66578 -16.54436 -15.93047 -15.60534 -15.28402 -15.22374 -15.12720
-14.67183 -14.50299 -14.20801 -13.91632 -13.85717 -13.65159 -13.59807 -13.24992
-12.95968 -12.92420 -12.76209 -12.55427 -12.47111 -12.32478 -12.03725 -12.00665
-11.98769 -11.78440 -11.64010 -11.56912 -11.42722 -10.69316 -10.45672 -10.03974
-10.02349 -8.91506 -7.86413 -5.21996 -0.47780 0.34886 1.35615 1.47417
1.49221 1.55137 1.58297 2.43063 2.54293 2.98110 3.32880 3.52732
3.71820 3.77196 3.84045 3.91727 3.94971 3.99662 4.05686 4.10578
4.21439 4.22359 4.30869 4.33078 4.54714 4.60202 4.65078 4.72005
4.79092 4.81791 4.92147 4.98165 5.01652 5.05255 5.07723 5.09817
5.19945 5.25906 5.39173 5.45283 5.51102 5.63467 5.73536 5.78516
6.15800 6.32306 6.59182 7.08756 7.75422 8.40136 9.24502
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.029181 B = 0.001947 C = 0.001874
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 959.305288 B =14377.429079 C =14939.775197
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.053 3.947
3 O -0.355 6.355
4 C 0.513 3.487
5 O -0.537 6.537
6 C -0.142 4.142
7 C -0.063 4.063
8 C -0.111 4.111
9 C -0.055 4.055
10 C 0.089 3.911
11 O -0.380 6.380
12 C 0.093 3.907
13 H 0.084 0.916
14 C -0.128 4.128
15 C 0.184 3.816
16 N -0.626 5.626
17 C -0.245 4.245
18 H 0.084 0.916
19 C -0.066 4.066
20 N -0.950 5.950
21 Si 0.980 3.020
22 H -0.285 1.285
23 H -0.295 1.295
24 H -0.267 1.267
25 C 0.115 3.885
26 C -0.116 4.116
27 C -0.060 4.060
28 H 0.101 0.899
29 H 0.070 0.930
30 H 0.068 0.932
31 H 0.069 0.931
32 H 0.072 0.928
33 H 0.142 0.858
34 H 0.151 0.849
35 H 0.072 0.928
36 H 0.078 0.922
37 H 0.089 0.911
38 H 0.069 0.931
39 H 0.021 0.979
40 H 0.006 0.994
41 H 0.248 0.752
42 H 0.022 0.978
43 H 0.049 0.951
44 H 0.148 0.852
45 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.636 -23.985 11.130 28.142
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.020 4.020
3 O -0.271 6.271
4 C 0.360 3.640
5 O -0.428 6.428
6 C -0.143 4.143
7 C -0.081 4.081
8 C -0.129 4.129
9 C -0.055 4.055
10 C 0.013 3.987
11 O -0.299 6.299
12 C 0.034 3.966
13 H 0.102 0.898
14 C -0.166 4.166
15 C 0.059 3.941
16 N -0.354 5.354
17 C -0.374 4.374
18 H 0.102 0.898
19 C -0.259 4.259
20 N -0.599 5.599
21 Si 0.808 3.192
22 H -0.212 1.212
23 H -0.222 1.222
24 H -0.192 1.192
25 C -0.010 4.010
26 C -0.133 4.133
27 C -0.078 4.078
28 H 0.119 0.881
29 H 0.089 0.911
30 H 0.087 0.913
31 H 0.088 0.912
32 H 0.090 0.910
33 H 0.159 0.841
34 H 0.169 0.831
35 H 0.090 0.910
36 H 0.097 0.903
37 H 0.107 0.893
38 H 0.087 0.913
39 H 0.040 0.960
40 H 0.024 0.976
41 H 0.057 0.943
42 H 0.040 0.960
43 H 0.068 0.932
44 H 0.166 0.834
45 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges -9.467 -24.241 10.903 28.215
hybrid contribution 0.132 1.046 -0.184 1.070
sum -9.335 -23.194 10.719 27.203
Atomic orbital electron populations
1.21837 0.90263 1.04490 1.03808 1.23348 0.97129 0.78731 1.02765
1.86546 1.22831 1.34088 1.83657 1.21368 0.80950 0.89872 0.71803
1.90807 1.61098 1.43347 1.47584 1.19259 0.94614 0.89931 1.10486
1.21352 0.93299 0.98304 0.95142 1.21244 1.01305 0.90839 0.99518
1.20092 0.94162 0.94583 0.96668 1.21629 1.01070 0.91678 0.84302
1.87939 1.84405 1.30946 1.26560 1.23091 0.93673 0.81470 0.98345
0.89784 1.22836 1.00294 0.96261 0.97182 1.20932 0.89089 0.89281
0.94755 1.44673 1.26933 1.04071 1.59731 1.19465 1.03048 0.82997
1.31851 0.89835 1.25705 0.97641 1.02371 1.00150 1.70186 1.18223
1.32353 1.39100 0.85036 0.78011 0.79481 0.76656 1.21184 1.22222
1.19186 1.22054 0.94825 0.88422 0.95720 1.21341 0.94723 0.97951
0.99328 1.21600 1.00998 0.90882 0.94277 0.88071 0.91106 0.91318
0.91248 0.90996 0.84066 0.83139 0.91000 0.90347 0.89289 0.91267
0.96036 0.97574 0.94271 0.96046 0.93223 0.83429 0.82698
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.16 10.29 71.98 0.74 -0.42 16
2 C 0.05 0.73 6.19 71.98 0.45 1.18 16
3 O -0.35 -6.61 9.47 -56.19 -0.53 -7.14 16
4 C 0.51 11.45 7.90 70.33 0.56 12.01 16
5 O -0.54 -14.44 16.14 19.95 0.32 -14.12 16
6 C -0.14 -2.92 5.87 -20.10 -0.12 -3.04 16
7 C -0.06 -1.24 9.60 22.54 0.22 -1.03 16
8 C -0.11 -2.09 9.68 22.23 0.22 -1.87 16
9 C -0.05 -1.11 5.52 -19.80 -0.11 -1.22 16
10 C 0.09 1.91 5.89 71.24 0.42 2.33 16
11 O -0.38 -11.16 10.14 -148.98 -1.51 -12.67 16
12 C 0.09 3.13 3.54 31.99 0.11 3.24 16
13 H 0.08 2.61 7.83 -2.38 -0.02 2.59 16
14 C -0.13 -4.77 6.69 31.78 0.21 -4.55 16
15 C 0.18 9.20 5.38 86.73 0.47 9.67 16
16 N -0.63 -32.51 3.39 -692.00 -2.35 -34.86 16
17 C -0.24 -13.77 10.27 84.03 0.86 -12.91 16
18 H 0.08 4.47 7.84 -2.91 -0.02 4.45 16
19 C -0.07 -3.74 5.48 84.86 0.46 -3.27 16
20 N -0.95 -57.24 10.36 21.65 0.22 -57.02 16
21 Si 0.98 45.52 29.56 68.60 2.03 47.54 16
22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16
23 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16
24 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16
25 C 0.12 4.73 6.97 86.86 0.61 5.34 16
26 C -0.12 -2.14 9.68 22.23 0.22 -1.93 16
27 C -0.06 -1.06 9.62 22.53 0.22 -0.85 16
28 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16
29 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16
30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16
31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16
32 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16
33 H 0.14 2.63 7.65 -2.91 -0.02 2.61 16
34 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16
35 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16
36 H 0.08 1.41 8.06 -2.38 -0.02 1.39 16
37 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16
38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16
39 H 0.02 1.18 7.30 -2.39 -0.02 1.16 16
40 H 0.01 0.34 7.61 -2.38 -0.02 0.32 16
41 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16
42 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16
43 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16
44 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16
45 H 0.16 2.17 7.61 -2.91 -0.02 2.15 16
Total: -1.00 -70.83 378.61 4.67 -66.16
By element:
Atomic # 1 Polarization: 8.46 SS G_CDS: 0.97 Total: 9.42 kcal
Atomic # 6 Polarization: -2.84 SS G_CDS: 5.52 Total: 2.68 kcal
Atomic # 7 Polarization: -89.75 SS G_CDS: -2.12 Total: -91.88 kcal
Atomic # 8 Polarization: -32.21 SS G_CDS: -1.72 Total: -33.93 kcal
Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal
Total: -70.83 4.67 -66.16 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001222163285.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.345 kcal
(2) G-P(sol) polarization free energy of solvation -70.832 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.177 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.158 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.503 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds