Wall clock time and date at job start Tue Mar 31 2020 13:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45208 * 109.47324 * 2 1 4 4 C 1.34708 * 117.00124 * 179.97438 * 3 2 1 5 5 O 1.21475 * 119.99803 * 359.97438 * 4 3 2 6 6 C 1.47719 * 119.99930 * 179.97438 * 4 3 2 7 7 C 1.39654 * 120.15083 * 0.02562 * 6 4 3 8 8 C 1.37923 * 119.84966 * 179.97438 * 7 6 4 9 9 C 1.38389 * 120.14657 * 359.97438 * 8 7 6 10 10 C 1.38345 * 120.30541 * 359.75028 * 9 8 7 11 11 C 1.37962 * 120.14940 * 0.50826 * 10 9 8 12 12 C 1.50705 * 120.07432 * 179.77086 * 11 10 9 13 13 O 1.42900 * 109.47089 * 359.72065 * 12 11 10 14 14 C 1.42901 * 113.99756 * 179.97438 * 13 12 11 15 15 H 1.08996 * 110.64265 * 328.31871 * 14 13 12 16 16 C 1.55150 * 110.87514 * 205.06390 * 14 13 12 17 17 C 1.55124 * 101.48860 * 205.89995 * 16 14 13 18 18 N 1.47428 * 104.71992 * 37.29733 * 17 16 14 19 19 C 1.36941 * 125.64344 * 155.82203 * 18 17 16 20 20 H 1.08003 * 119.99654 * 190.44130 * 19 18 17 21 21 C 1.38811 * 120.00604 * 10.43256 * 19 18 17 22 22 N 1.31621 * 119.99472 * 9.07328 * 21 19 18 23 23 Si 1.86802 * 120.00075 * 189.06828 * 21 19 18 24 24 H 1.48497 * 109.46995 * 84.99393 * 23 21 19 25 25 H 1.48497 * 109.47222 * 324.99067 * 23 21 19 26 26 H 1.48502 * 109.46692 * 204.99429 * 23 21 19 27 27 C 1.47018 * 108.70261 * 335.55012 * 18 17 16 28 28 H 1.09001 * 109.47099 * 300.00287 * 1 2 3 29 29 H 1.08997 * 109.47164 * 59.99823 * 1 2 3 30 30 H 1.08998 * 109.47169 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47607 * 239.99664 * 2 1 3 32 32 H 1.09005 * 109.47153 * 119.99564 * 2 1 3 33 33 H 1.07998 * 120.07225 * 359.97438 * 7 6 4 34 34 H 1.07996 * 119.92656 * 179.97438 * 8 7 6 35 35 H 1.08003 * 119.84731 * 179.97438 * 9 8 7 36 36 H 1.08003 * 119.92535 * 180.25596 * 10 9 8 37 37 H 1.09000 * 109.46843 * 239.71888 * 12 11 10 38 38 H 1.08997 * 109.47195 * 119.72426 * 12 11 10 39 39 H 1.09006 * 111.00325 * 324.13865 * 16 14 13 40 40 H 1.09003 * 111.00510 * 87.95083 * 16 14 13 41 41 H 1.08991 * 110.50089 * 278.45300 * 17 16 14 42 42 H 1.08999 * 110.34333 * 156.05813 * 17 16 14 43 43 H 0.96997 * 119.99379 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.87991 * 120.71198 * 27 18 17 45 45 H 1.09003 * 109.87918 * 241.87061 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0894 0.5821 0.0015 6 6 3.9141 2.9105 0.0000 7 6 3.0663 4.0203 -0.0005 8 6 3.6002 5.2920 -0.0005 9 6 4.9726 5.4696 0.0006 10 6 5.8183 4.3747 0.0069 11 6 5.2977 3.0971 0.0015 12 6 6.2204 1.9056 0.0031 13 8 7.5773 2.3539 0.0040 14 6 8.5387 1.2967 0.0061 15 1 8.1545 0.4290 0.5424 16 6 9.8816 1.7718 0.6210 17 6 10.8910 0.8125 -0.0625 18 7 10.3800 0.6475 -1.4355 19 6 11.1271 0.2964 -2.5282 20 1 10.7007 0.3640 -3.5182 21 6 12.4324 -0.1461 -2.3635 22 7 12.8942 -0.3991 -1.1572 23 14 13.5335 -0.3827 -3.8539 24 1 14.1680 0.9115 -4.2110 25 1 12.7205 -0.8678 -4.9979 26 1 14.5873 -1.3801 -3.5373 27 6 8.9345 0.9158 -1.4361 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.9951 3.8830 -0.0010 34 1 2.9457 6.1511 -0.0013 35 1 5.3855 6.4676 0.0002 36 1 6.8884 4.5205 0.0119 37 1 6.0374 1.3031 -0.8866 38 1 6.0359 1.3043 0.8933 39 1 10.0855 2.8102 0.3592 40 1 9.8859 1.6358 1.7025 41 1 10.9131 -0.1480 0.4521 42 1 11.8856 1.2581 -0.0789 43 1 13.8065 -0.7080 -1.0421 44 1 8.7110 1.7411 -2.1122 45 1 8.3919 0.0227 -1.7459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223084762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:26 Heat of formation + Delta-G solvation = -78.739111 kcal Electronic energy + Delta-G solvation = -26404.064917 eV Core-core repulsion = 22580.586240 eV Total energy + Delta-G solvation = -3823.478677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.89719 -39.21300 -38.13403 -36.80779 -35.82669 -32.48996 -32.37710 -31.62917 -31.13964 -29.12216 -27.22569 -26.26264 -24.68049 -24.20528 -23.15775 -21.76340 -21.01847 -20.18079 -19.99774 -18.18682 -17.15801 -16.88249 -16.81630 -16.49389 -15.98775 -15.26735 -14.81124 -14.69552 -14.59502 -14.36402 -14.20848 -13.81236 -13.55939 -13.29582 -13.09334 -12.79161 -12.39271 -12.33150 -12.22107 -11.94757 -11.85932 -11.68005 -11.49777 -11.31375 -11.11795 -10.83917 -10.79475 -10.73793 -10.41926 -10.23379 -10.06558 -9.72981 -9.63207 -9.30509 -9.21424 -8.78085 -8.55385 -6.75830 -5.70903 -3.03715 0.49016 1.15351 2.37029 2.37887 3.43212 3.47810 3.49698 3.55742 3.79846 4.37372 4.53743 4.60579 4.63116 4.65071 4.79309 4.84071 4.94755 5.12564 5.26244 5.36168 5.42472 5.43030 5.45597 5.52283 5.54160 5.60108 5.66378 5.73408 5.81525 5.86169 5.91542 6.01983 6.11156 6.25528 6.29297 6.40861 6.57983 6.60603 6.65727 6.71768 6.79488 7.52050 7.53706 7.60352 7.67914 7.82379 8.30018 9.23230 9.84799 10.52643 11.42399 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.002711 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.865254 B =10324.076785 C =11284.668889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.356 6.356 4 C 0.506 3.494 5 O -0.498 6.498 6 C -0.131 4.131 7 C -0.063 4.063 8 C -0.141 4.141 9 C -0.082 4.082 10 C -0.108 4.108 11 C -0.014 4.014 12 C 0.101 3.899 13 O -0.382 6.382 14 C 0.080 3.920 15 H 0.065 0.935 16 C -0.138 4.138 17 C 0.174 3.826 18 N -0.601 5.601 19 C -0.227 4.227 20 H 0.076 0.924 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.912 3.088 24 H -0.288 1.288 25 H -0.281 1.281 26 H -0.291 1.291 27 C 0.116 3.884 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.147 0.853 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.253 0.747 44 H 0.033 0.967 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.801 8.708 5.753 26.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.273 6.273 4 C 0.352 3.648 5 O -0.387 6.387 6 C -0.132 4.132 7 C -0.081 4.081 8 C -0.159 4.159 9 C -0.101 4.101 10 C -0.126 4.126 11 C -0.014 4.014 12 C 0.025 3.975 13 O -0.301 6.301 14 C 0.022 3.978 15 H 0.083 0.917 16 C -0.177 4.177 17 C 0.049 3.951 18 N -0.328 5.328 19 C -0.355 4.355 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.207 1.207 26 H -0.217 1.217 27 C -0.010 4.010 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.165 0.835 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.047 0.953 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -24.363 8.482 5.707 26.421 hybrid contribution 0.454 -0.676 -0.791 1.135 sum -23.909 7.805 4.916 25.627 Atomic orbital electron populations 1.21807 0.92536 1.03073 1.03484 1.23060 0.95308 0.79878 1.02942 1.86517 1.23804 1.32569 1.84425 1.21202 0.80613 0.89878 0.73139 1.90874 1.59931 1.42578 1.45343 1.18829 0.92861 0.90237 1.11293 1.21346 0.99881 0.91489 0.95409 1.21148 0.95469 0.96964 1.02300 1.21524 0.93485 0.99369 0.95677 1.21132 1.01662 0.90695 0.99112 1.19923 0.91365 0.95899 0.94214 1.21400 0.81369 0.92498 1.02230 1.87800 1.13820 1.33217 1.95233 1.23185 0.88598 0.88948 0.97046 0.91694 1.23168 0.94165 1.01443 0.98904 1.21459 0.95296 0.94648 0.83696 1.44375 1.01394 1.81357 1.05689 1.19030 0.94071 1.36785 0.85652 0.90648 1.24835 0.98075 1.00710 0.96858 1.69945 1.16227 1.50766 1.19801 0.86128 0.80375 0.77455 0.81763 1.21500 1.20709 1.21704 1.21727 0.87391 0.97540 0.94345 0.91486 0.91445 0.90127 0.90971 0.91036 0.84537 0.85242 0.85184 0.83527 0.90645 0.90914 0.91151 0.91863 0.95349 0.90895 0.93675 0.94917 0.96119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 37.16 0.38 -0.47 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.36 -3.80 9.47 -40.51 -0.38 -4.18 16 4 C 0.51 6.53 7.88 34.60 0.27 6.80 16 5 O -0.50 -7.63 13.20 -19.25 -0.25 -7.89 16 6 C -0.13 -1.60 5.87 -104.98 -0.62 -2.22 16 7 C -0.06 -0.60 9.62 -39.17 -0.38 -0.98 16 8 C -0.14 -1.18 10.03 -39.64 -0.40 -1.58 16 9 C -0.08 -0.77 10.04 -39.49 -0.40 -1.17 16 10 C -0.11 -1.32 9.37 -39.64 -0.37 -1.69 16 11 C -0.01 -0.18 5.91 -104.21 -0.62 -0.80 16 12 C 0.10 1.58 4.45 36.01 0.16 1.74 16 13 O -0.38 -6.69 8.56 -35.23 -0.30 -6.99 16 14 C 0.08 1.56 3.39 -24.90 -0.08 1.47 16 15 H 0.07 1.22 7.88 -51.93 -0.41 0.81 16 16 C -0.14 -2.77 6.83 -24.47 -0.17 -2.94 16 17 C 0.17 4.36 5.43 -2.41 -0.01 4.35 16 18 N -0.60 -16.22 3.39 -169.94 -0.58 -16.80 16 19 C -0.23 -6.59 10.24 -15.06 -0.15 -6.75 16 20 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 21 C -0.01 -0.24 5.40 -17.43 -0.09 -0.34 16 22 N -0.92 -27.60 10.68 55.49 0.59 -27.01 16 23 Si 0.91 22.58 29.56 -169.99 -5.03 17.55 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 C 0.12 2.66 7.01 -3.07 -0.02 2.64 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.14 1.03 7.61 -52.49 -0.40 0.63 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 36 H 0.15 1.88 7.00 -52.48 -0.37 1.51 16 37 H 0.08 1.27 7.34 -51.93 -0.38 0.89 16 38 H 0.07 1.15 7.31 -51.93 -0.38 0.77 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 42 H 0.07 2.00 6.95 -51.93 -0.36 1.64 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.03 0.76 8.06 -51.93 -0.42 0.34 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -32.94 371.76 -9.52 -42.46 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.91 Total: -1.59 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.26 Total: -1.16 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.02 Total: -43.80 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.94 Total: -19.07 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.94 -9.52 -42.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223084762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.278 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds