Wall clock time and date at job start Tue Mar 31 2020 13:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45208 * 109.47324 * 2 1 4 4 C 1.34708 * 117.00124 * 179.97438 * 3 2 1 5 5 O 1.21475 * 119.99803 * 359.97438 * 4 3 2 6 6 C 1.47719 * 119.99930 * 179.97438 * 4 3 2 7 7 C 1.39654 * 120.15083 * 0.02562 * 6 4 3 8 8 C 1.37923 * 119.84966 * 179.97438 * 7 6 4 9 9 C 1.38389 * 120.14657 * 359.97438 * 8 7 6 10 10 C 1.38345 * 120.30541 * 359.75028 * 9 8 7 11 11 C 1.37962 * 120.14940 * 0.50826 * 10 9 8 12 12 C 1.50705 * 120.07432 * 179.77086 * 11 10 9 13 13 O 1.42900 * 109.47089 * 359.72065 * 12 11 10 14 14 C 1.42901 * 113.99756 * 179.97438 * 13 12 11 15 15 H 1.08996 * 110.64265 * 328.31871 * 14 13 12 16 16 C 1.55150 * 110.87514 * 205.06390 * 14 13 12 17 17 C 1.55124 * 101.48860 * 205.89995 * 16 14 13 18 18 N 1.47428 * 104.71992 * 37.29733 * 17 16 14 19 19 C 1.36941 * 125.64344 * 155.82203 * 18 17 16 20 20 H 1.08003 * 119.99654 * 190.44130 * 19 18 17 21 21 C 1.38811 * 120.00604 * 10.43256 * 19 18 17 22 22 N 1.31621 * 119.99472 * 9.07328 * 21 19 18 23 23 Si 1.86802 * 120.00075 * 189.06828 * 21 19 18 24 24 H 1.48497 * 109.46995 * 84.99393 * 23 21 19 25 25 H 1.48497 * 109.47222 * 324.99067 * 23 21 19 26 26 H 1.48502 * 109.46692 * 204.99429 * 23 21 19 27 27 C 1.47018 * 108.70261 * 335.55012 * 18 17 16 28 28 H 1.09001 * 109.47099 * 300.00287 * 1 2 3 29 29 H 1.08997 * 109.47164 * 59.99823 * 1 2 3 30 30 H 1.08998 * 109.47169 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47607 * 239.99664 * 2 1 3 32 32 H 1.09005 * 109.47153 * 119.99564 * 2 1 3 33 33 H 1.07998 * 120.07225 * 359.97438 * 7 6 4 34 34 H 1.07996 * 119.92656 * 179.97438 * 8 7 6 35 35 H 1.08003 * 119.84731 * 179.97438 * 9 8 7 36 36 H 1.08003 * 119.92535 * 180.25596 * 10 9 8 37 37 H 1.09000 * 109.46843 * 239.71888 * 12 11 10 38 38 H 1.08997 * 109.47195 * 119.72426 * 12 11 10 39 39 H 1.09006 * 111.00325 * 324.13865 * 16 14 13 40 40 H 1.09003 * 111.00510 * 87.95083 * 16 14 13 41 41 H 1.08991 * 110.50089 * 278.45300 * 17 16 14 42 42 H 1.08999 * 110.34333 * 156.05813 * 17 16 14 43 43 H 0.96997 * 119.99379 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.87991 * 120.71198 * 27 18 17 45 45 H 1.09003 * 109.87918 * 241.87061 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0894 0.5821 0.0015 6 6 3.9141 2.9105 0.0000 7 6 3.0663 4.0203 -0.0005 8 6 3.6002 5.2920 -0.0005 9 6 4.9726 5.4696 0.0006 10 6 5.8183 4.3747 0.0069 11 6 5.2977 3.0971 0.0015 12 6 6.2204 1.9056 0.0031 13 8 7.5773 2.3539 0.0040 14 6 8.5387 1.2967 0.0061 15 1 8.1545 0.4290 0.5424 16 6 9.8816 1.7718 0.6210 17 6 10.8910 0.8125 -0.0625 18 7 10.3800 0.6475 -1.4355 19 6 11.1271 0.2964 -2.5282 20 1 10.7007 0.3640 -3.5182 21 6 12.4324 -0.1461 -2.3635 22 7 12.8942 -0.3991 -1.1572 23 14 13.5335 -0.3827 -3.8539 24 1 14.1680 0.9115 -4.2110 25 1 12.7205 -0.8678 -4.9979 26 1 14.5873 -1.3801 -3.5373 27 6 8.9345 0.9158 -1.4361 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.9951 3.8830 -0.0010 34 1 2.9457 6.1511 -0.0013 35 1 5.3855 6.4676 0.0002 36 1 6.8884 4.5205 0.0119 37 1 6.0374 1.3031 -0.8866 38 1 6.0359 1.3043 0.8933 39 1 10.0855 2.8102 0.3592 40 1 9.8859 1.6358 1.7025 41 1 10.9131 -0.1480 0.4521 42 1 11.8856 1.2581 -0.0789 43 1 13.8065 -0.7080 -1.0421 44 1 8.7110 1.7411 -2.1122 45 1 8.3919 0.0227 -1.7459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223084762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:25 Heat of formation + Delta-G solvation = -96.959551 kcal Electronic energy + Delta-G solvation = -26404.855014 eV Core-core repulsion = 22580.586240 eV Total energy + Delta-G solvation = -3824.268775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.83097 -40.27196 -39.56617 -37.77466 -37.48086 -34.34561 -33.10523 -32.82237 -31.89235 -31.05316 -28.99376 -27.51234 -26.23057 -25.48446 -23.87122 -22.70906 -22.21937 -21.94109 -21.55865 -19.10469 -18.94875 -18.10828 -17.88073 -17.67972 -16.95579 -16.75925 -16.57156 -15.87717 -15.83579 -15.44393 -15.26505 -15.10358 -14.93569 -14.34424 -14.29840 -13.87378 -13.64566 -13.63126 -13.55126 -13.16951 -12.95095 -12.90204 -12.76108 -12.69105 -12.54325 -12.52052 -12.21166 -12.05288 -12.02885 -11.84004 -11.56728 -11.52258 -11.30075 -10.75501 -10.70061 -10.06179 -9.76053 -8.92628 -7.92035 -5.28638 -0.37549 0.33647 1.44299 1.45756 1.47553 1.54679 1.55655 2.38731 2.52064 2.73041 3.27344 3.56878 3.64723 3.67019 3.81429 3.94795 3.99102 4.01768 4.06232 4.11091 4.13887 4.32529 4.35575 4.41373 4.46452 4.47949 4.60919 4.69642 4.75047 4.85345 4.92263 4.92538 4.93133 5.00509 5.04682 5.10883 5.26426 5.34968 5.39022 5.46430 5.49195 5.53763 5.65228 5.88292 6.14049 6.21202 6.61077 7.03356 7.69201 8.36321 9.20058 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.002711 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.865254 B =10324.076785 C =11284.668889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.350 6.350 4 C 0.505 3.495 5 O -0.534 6.534 6 C -0.146 4.146 7 C -0.056 4.056 8 C -0.127 4.127 9 C -0.074 4.074 10 C -0.124 4.124 11 C -0.039 4.039 12 C 0.107 3.893 13 O -0.377 6.377 14 C 0.094 3.906 15 H 0.073 0.927 16 C -0.121 4.121 17 C 0.179 3.821 18 N -0.623 5.623 19 C -0.251 4.251 20 H 0.076 0.924 21 C -0.061 4.061 22 N -0.948 5.948 23 Si 0.983 3.017 24 H -0.281 1.281 25 H -0.271 1.271 26 H -0.290 1.290 27 C 0.115 3.885 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.160 0.840 36 H 0.134 0.866 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.005 0.995 42 H 0.043 0.957 43 H 0.251 0.749 44 H 0.030 0.970 45 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.103 10.809 5.730 29.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 O -0.267 6.267 4 C 0.352 3.648 5 O -0.426 6.426 6 C -0.148 4.148 7 C -0.074 4.074 8 C -0.145 4.145 9 C -0.092 4.092 10 C -0.142 4.142 11 C -0.040 4.040 12 C 0.031 3.969 13 O -0.296 6.296 14 C 0.036 3.964 15 H 0.091 0.909 16 C -0.159 4.159 17 C 0.054 3.946 18 N -0.350 5.350 19 C -0.380 4.380 20 H 0.094 0.906 21 C -0.255 4.255 22 N -0.595 5.595 23 Si 0.810 3.190 24 H -0.208 1.208 25 H -0.196 1.196 26 H -0.216 1.216 27 C -0.011 4.011 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.178 0.822 34 H 0.187 0.813 35 H 0.178 0.822 36 H 0.152 0.848 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.023 0.977 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -26.715 10.603 5.685 29.299 hybrid contribution 1.037 -1.288 -0.788 1.831 sum -25.678 9.315 4.897 27.751 Atomic orbital electron populations 1.21817 0.89853 1.04437 1.03978 1.23335 0.97347 0.78877 1.02506 1.86515 1.22506 1.33819 1.83845 1.21476 0.81092 0.89968 0.72257 1.90853 1.60795 1.43710 1.47207 1.18921 0.92626 0.90769 1.12451 1.21675 1.00712 0.91090 0.93883 1.21611 0.95483 0.97643 0.99736 1.21871 0.93806 0.99703 0.93798 1.21142 1.01616 0.91100 1.00351 1.19812 0.91675 0.95502 0.96994 1.21334 0.80607 0.93784 1.01175 1.87799 1.14558 1.32284 1.94997 1.22905 0.89098 0.89762 0.94644 0.90871 1.22986 0.92542 1.00152 1.00221 1.21272 0.95413 0.94482 0.83440 1.44684 1.03083 1.81308 1.05925 1.19388 0.94945 1.37164 0.86498 0.90645 1.25726 0.99291 1.00552 0.99917 1.70138 1.16301 1.51299 1.21802 0.85038 0.78144 0.77364 0.78412 1.20803 1.19581 1.21639 1.21828 0.85460 0.97061 0.96769 0.90850 0.91011 0.88336 0.91664 0.91388 0.82236 0.81283 0.82242 0.84788 0.92554 0.91490 0.90702 0.88756 0.97695 0.93814 0.93962 0.95240 0.96739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 10.29 71.98 0.74 -0.61 16 2 C 0.05 0.88 6.19 71.98 0.45 1.32 16 3 O -0.35 -7.21 9.47 -56.18 -0.53 -7.74 16 4 C 0.50 13.10 7.88 70.33 0.55 13.66 16 5 O -0.53 -17.10 13.20 19.92 0.26 -16.84 16 6 C -0.15 -3.47 5.87 -20.10 -0.12 -3.58 16 7 C -0.06 -0.90 9.62 22.54 0.22 -0.68 16 8 C -0.13 -1.59 10.03 22.23 0.22 -1.37 16 9 C -0.07 -1.15 10.04 22.33 0.22 -0.93 16 10 C -0.12 -2.89 9.37 22.23 0.21 -2.69 16 11 C -0.04 -1.07 5.91 -19.60 -0.12 -1.19 16 12 C 0.11 3.46 4.45 71.24 0.32 3.78 16 13 O -0.38 -13.38 8.56 -148.98 -1.28 -14.65 16 14 C 0.09 3.71 3.39 31.78 0.11 3.82 16 15 H 0.07 2.78 7.88 -2.39 -0.02 2.76 16 16 C -0.12 -4.82 6.83 32.06 0.22 -4.60 16 17 C 0.18 9.26 5.43 86.93 0.47 9.73 16 18 N -0.62 -34.66 3.39 -691.56 -2.35 -37.01 16 19 C -0.25 -14.96 10.24 84.03 0.86 -14.10 16 20 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 21 C -0.06 -3.61 5.40 84.86 0.46 -3.15 16 22 N -0.95 -58.36 10.68 21.65 0.23 -58.12 16 23 Si 0.98 47.03 29.56 68.60 2.03 49.05 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 25 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 27 C 0.11 5.40 7.01 86.73 0.61 6.01 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.16 1.80 7.61 -2.91 -0.02 1.78 16 34 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 35 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.13 3.39 7.00 -2.91 -0.02 3.37 16 37 H 0.06 2.01 7.34 -2.39 -0.02 1.99 16 38 H 0.07 2.21 7.31 -2.39 -0.02 2.19 16 39 H 0.07 2.93 8.14 -2.38 -0.02 2.91 16 40 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.01 0.28 8.07 -2.39 -0.02 0.26 16 42 H 0.04 2.49 6.95 -2.39 -0.02 2.47 16 43 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 44 H 0.03 1.40 8.06 -2.39 -0.02 1.38 16 45 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -73.97 371.76 4.76 -69.20 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.97 Total: 10.68 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 5.42 Total: 5.43 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -2.12 Total: -95.13 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -1.54 Total: -39.23 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal Total: -73.97 4.76 -69.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223084762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.756 kcal (2) G-P(sol) polarization free energy of solvation -73.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds