Wall clock time and date at job start Tue Mar 31 2020 13:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47121 * 2 1 4 4 C 1.34228 * 117.00289 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00044 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00305 * 179.97438 * 4 3 2 7 7 C 1.50694 * 109.47252 * 180.02562 * 6 4 3 8 8 C 1.38271 * 119.94396 * 269.72510 * 7 6 4 9 9 C 1.38147 * 120.05077 * 179.72644 * 8 7 6 10 10 C 1.38728 * 119.94801 * 0.54706 * 9 8 7 11 11 O 1.35901 * 120.05588 * 179.74876 * 10 9 8 12 12 C 1.42894 * 116.99732 * 185.64372 * 11 10 9 13 13 H 1.09000 * 110.89407 * 32.40669 * 12 11 10 14 14 C 1.55162 * 111.00346 * 156.29095 * 12 11 10 15 15 C 1.54320 * 102.94389 * 153.57550 * 14 12 11 16 16 N 1.47025 * 107.27151 * 337.80158 * 15 14 12 17 17 C 1.36933 * 125.64711 * 178.96236 * 16 15 14 18 18 H 1.08007 * 120.00033 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00477 * 359.97438 * 17 16 15 20 20 N 1.31623 * 119.99569 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00365 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47095 * 90.00046 * 21 19 17 23 23 H 1.48501 * 109.47349 * 210.00102 * 21 19 17 24 24 H 1.48497 * 109.46896 * 329.99991 * 21 19 17 25 25 C 1.47425 * 108.70387 * 358.94553 * 16 15 14 26 26 C 1.38728 * 119.88646 * 359.72861 * 10 9 8 27 27 C 1.38139 * 119.94910 * 359.97438 * 26 10 9 28 28 H 1.08996 * 109.46824 * 299.99857 * 1 2 3 29 29 H 1.08996 * 109.46872 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46885 * 60.00208 * 1 2 3 31 31 H 1.08994 * 109.47490 * 119.99815 * 2 1 3 32 32 H 1.08994 * 109.47121 * 240.00597 * 2 1 3 33 33 H 1.09001 * 109.46988 * 300.00349 * 6 4 3 34 34 H 1.09006 * 109.47297 * 60.00067 * 6 4 3 35 35 H 1.07998 * 119.96893 * 0.02562 * 8 7 6 36 36 H 1.08003 * 120.02036 * 180.27854 * 9 8 7 37 37 H 1.09004 * 110.71384 * 271.93407 * 14 12 11 38 38 H 1.08996 * 110.72186 * 35.02953 * 14 12 11 39 39 H 1.08998 * 109.88874 * 97.22202 * 15 14 12 40 40 H 1.08996 * 109.88022 * 218.38884 * 15 14 12 41 41 H 0.96996 * 119.99691 * 180.02562 * 20 19 17 42 42 H 1.09000 * 110.36717 * 265.29075 * 25 16 15 43 43 H 1.08999 * 110.37095 * 142.96372 * 25 16 15 44 44 H 1.08002 * 120.02506 * 180.02562 * 26 10 9 45 45 H 1.08000 * 119.97638 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5868 -0.0015 6 6 3.9207 2.9375 -0.0012 7 6 5.4256 2.8586 -0.0023 8 6 6.1161 2.8284 1.1953 9 6 7.4954 2.7504 1.1968 10 6 8.1883 2.7139 -0.0044 11 8 9.5454 2.6424 -0.0055 12 6 10.1988 2.7333 -1.2730 13 1 9.6420 3.3791 -1.9520 14 6 11.6611 3.2262 -1.1108 15 6 12.3660 2.6300 -2.3474 16 7 11.5614 1.4852 -2.7988 17 6 11.8356 0.6952 -3.8832 18 1 11.1797 -0.1258 -4.1328 19 6 12.9563 0.9495 -4.6617 20 7 13.7553 1.9504 -4.3578 21 14 13.3306 -0.1286 -6.1405 22 1 12.6721 0.4375 -7.3452 23 1 14.7989 -0.1796 -6.3570 24 1 12.8185 -1.5006 -5.8951 25 6 10.4109 1.3285 -1.8905 26 6 7.4935 2.7501 -1.2046 27 6 6.1140 2.8219 -1.2010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 3.5844 3.4693 -0.8912 34 1 3.5851 3.4699 0.8888 35 1 5.5764 2.8609 2.1302 36 1 8.0339 2.7223 2.1326 37 1 11.7053 4.3152 -1.1295 38 1 12.0985 2.8396 -0.1904 39 1 12.4231 3.3778 -3.1382 40 1 13.3678 2.2955 -2.0776 41 1 14.5383 2.1283 -4.9020 42 1 10.6395 0.6020 -1.1107 43 1 9.5261 1.0218 -2.4483 44 1 8.0307 2.7214 -2.1411 45 1 5.5726 2.8505 -2.1351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226396210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:45 Heat of formation + Delta-G solvation = -92.112554 kcal Electronic energy + Delta-G solvation = -25971.506079 eV Core-core repulsion = 22147.447486 eV Total energy + Delta-G solvation = -3824.058593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.67318 -41.15949 -39.38379 -37.97213 -37.41840 -34.41307 -33.43108 -32.40598 -32.01285 -31.20043 -29.26079 -28.26746 -26.51216 -24.37497 -24.05439 -23.02956 -22.16455 -21.85118 -21.28869 -19.35277 -19.02991 -18.72822 -17.73241 -17.34983 -16.97538 -16.73028 -16.51115 -16.21985 -15.73885 -15.58257 -15.17815 -15.00310 -14.50931 -14.40540 -14.31215 -14.05887 -13.96548 -13.65421 -13.52101 -13.13992 -13.01157 -12.86765 -12.76311 -12.67820 -12.61665 -12.46546 -12.18266 -12.06972 -11.95841 -11.88771 -11.59905 -11.51380 -11.47062 -11.40073 -10.76392 -9.94329 -9.10373 -8.98771 -7.90800 -5.28490 0.34132 0.41050 1.22765 1.44187 1.46442 1.55318 1.77378 2.11741 2.47726 2.82028 3.27834 3.58510 3.63332 3.65181 3.84222 3.89410 3.93215 3.96786 4.01003 4.05720 4.10789 4.27422 4.36664 4.38230 4.44328 4.55579 4.64096 4.67283 4.76993 4.80330 4.86559 4.91318 4.93870 4.98339 5.08311 5.17093 5.30656 5.37403 5.43296 5.50335 5.55371 5.57318 5.66667 5.85725 6.11354 6.46474 6.78116 7.02966 7.67021 8.31196 9.19572 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016894 B = 0.002463 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.953861 B =11363.939514 C =12661.895882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.460 3.540 5 O -0.540 6.540 6 C -0.058 4.058 7 C -0.126 4.126 8 C -0.063 4.063 9 C -0.163 4.163 10 C 0.115 3.885 11 O -0.313 6.313 12 C 0.085 3.915 13 H 0.090 0.910 14 C -0.123 4.123 15 C 0.186 3.814 16 N -0.623 5.623 17 C -0.249 4.249 18 H 0.080 0.920 19 C -0.062 4.062 20 N -0.949 5.949 21 Si 0.983 3.017 22 H -0.282 1.282 23 H -0.291 1.291 24 H -0.271 1.271 25 C 0.119 3.881 26 C -0.221 4.221 27 C -0.069 4.069 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.141 0.859 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.025 0.975 40 H 0.017 0.983 41 H 0.250 0.750 42 H 0.021 0.979 43 H 0.044 0.956 44 H 0.122 0.878 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.620 4.473 12.036 29.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.277 6.277 4 C 0.304 3.696 5 O -0.429 6.429 6 C -0.095 4.095 7 C -0.126 4.126 8 C -0.081 4.081 9 C -0.182 4.182 10 C 0.070 3.930 11 O -0.226 6.226 12 C 0.028 3.972 13 H 0.108 0.892 14 C -0.161 4.161 15 C 0.062 3.938 16 N -0.351 5.351 17 C -0.378 4.378 18 H 0.098 0.902 19 C -0.256 4.256 20 N -0.597 5.597 21 Si 0.811 3.189 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.196 1.196 25 C -0.007 4.007 26 C -0.240 4.240 27 C -0.087 4.087 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.157 0.843 34 H 0.165 0.835 35 H 0.175 0.825 36 H 0.159 0.841 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.043 0.957 40 H 0.035 0.965 41 H 0.060 0.940 42 H 0.039 0.961 43 H 0.062 0.938 44 H 0.140 0.860 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -26.149 4.113 12.051 29.084 hybrid contribution 0.982 -0.998 -1.235 1.867 sum -25.167 3.115 10.816 27.569 Atomic orbital electron populations 1.21813 0.90323 1.04217 1.03884 1.23229 0.97110 0.79578 1.02187 1.86502 1.24121 1.33237 1.83851 1.24322 0.80420 0.93446 0.71400 1.90724 1.61221 1.44648 1.46354 1.20346 0.89905 0.89832 1.09404 1.19406 0.94648 1.05378 0.93201 1.21115 0.92494 0.95737 0.98711 1.20645 0.94611 1.06871 0.96055 1.19446 0.82424 0.95955 0.95190 1.86062 1.17051 1.87453 1.32022 1.23473 0.93664 0.96885 0.83200 0.89245 1.22869 0.92335 1.01635 0.99252 1.20955 0.92728 0.88369 0.91791 1.44617 1.26175 1.34267 1.30014 1.19425 1.07423 1.08603 1.02334 0.90174 1.25699 0.97334 1.00134 1.02407 1.70153 1.16276 1.31995 1.41267 0.85017 0.76738 0.78312 0.78862 1.20870 1.21721 1.19629 1.21994 0.90602 0.95492 0.92652 1.21397 0.96213 1.09146 0.97254 1.21028 0.92803 0.96028 0.98793 0.90901 0.88666 0.91170 0.91618 0.92040 0.84304 0.83474 0.82484 0.84122 0.88595 0.90375 0.95671 0.96521 0.94049 0.96073 0.93783 0.86043 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 71.98 0.74 -0.44 16 2 C 0.05 0.76 6.19 71.98 0.45 1.21 16 3 O -0.36 -6.01 10.22 -51.40 -0.53 -6.54 16 4 C 0.46 8.90 7.95 71.24 0.57 9.46 16 5 O -0.54 -15.28 15.78 21.98 0.35 -14.94 16 6 C -0.06 -0.73 5.94 29.10 0.17 -0.56 16 7 C -0.13 -2.54 4.38 -19.85 -0.09 -2.62 16 8 C -0.06 -1.28 9.69 22.26 0.22 -1.06 16 9 C -0.16 -4.17 9.99 22.37 0.22 -3.95 16 10 C 0.11 3.59 6.68 22.50 0.15 3.74 16 11 O -0.31 -11.03 9.95 -92.44 -0.92 -11.95 16 12 C 0.08 3.21 2.81 31.99 0.09 3.30 16 13 H 0.09 3.24 6.24 -2.39 -0.01 3.22 16 14 C -0.12 -4.75 6.69 31.78 0.21 -4.54 16 15 C 0.19 9.43 5.37 86.73 0.47 9.89 16 16 N -0.62 -33.49 3.39 -691.98 -2.35 -35.84 16 17 C -0.25 -14.44 10.28 84.03 0.86 -13.57 16 18 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 19 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 20 N -0.95 -57.35 10.31 21.65 0.22 -57.13 16 21 Si 0.98 46.37 29.55 68.60 2.03 48.40 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 C 0.12 5.33 6.85 86.86 0.60 5.93 16 26 C -0.22 -6.59 8.94 22.36 0.20 -6.39 16 27 C -0.07 -1.65 9.69 22.25 0.22 -1.43 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.99 8.13 -2.39 -0.02 0.98 16 32 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 33 H 0.14 1.08 8.08 -2.39 -0.02 1.07 16 34 H 0.15 0.89 8.08 -2.38 -0.02 0.87 16 35 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.10 3.18 8.14 -2.38 -0.02 3.16 16 38 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.03 1.38 7.38 -2.39 -0.02 1.36 16 40 H 0.02 0.93 7.51 -2.39 -0.02 0.92 16 41 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 42 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.04 1.94 7.79 -2.39 -0.02 1.92 16 44 H 0.12 3.85 5.65 -2.91 -0.02 3.83 16 45 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -74.40 373.92 5.32 -69.08 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.98 Total: 13.11 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 5.54 Total: -4.19 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -2.13 Total: -92.97 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -1.10 Total: -33.42 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -74.40 5.32 -69.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226396210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.031 kcal (2) G-P(sol) polarization free energy of solvation -74.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds