Wall clock time and date at job start Tue Mar 31 2020 12:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35999 * 117.00151 * 2 1 4 4 C 1.38565 * 120.06824 * 359.97438 * 3 2 1 5 5 C 1.38244 * 119.99601 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.92559 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47353 * 89.99872 * 6 5 4 8 8 C 1.50701 * 119.99970 * 179.97438 * 7 6 5 9 9 O 1.20755 * 119.99939 * 0.02562 * 7 6 5 10 10 C 1.38247 * 120.14708 * 359.97438 * 5 4 3 11 11 C 1.38250 * 120.14752 * 359.77127 * 10 5 4 12 12 C 1.38561 * 119.99696 * 0.50298 * 11 10 5 13 13 O 1.35998 * 120.07368 * 179.74326 * 12 11 10 14 14 C 1.42898 * 116.99646 * 5.81693 * 13 12 11 15 15 C 1.53518 * 114.17125 * 156.72817 * 14 13 12 16 16 N 1.47477 * 87.93047 * 87.61669 * 15 14 13 17 17 C 1.46900 * 110.99874 * 138.70596 * 16 15 14 18 18 C 1.50696 * 109.47528 * 169.99786 * 17 16 15 19 19 H 1.08006 * 119.99938 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00614 * 179.97438 * 18 17 16 21 21 N 1.31523 * 119.99396 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00442 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47163 * 180.02562 * 22 20 18 24 24 H 1.48497 * 109.46992 * 300.00310 * 22 20 18 25 25 H 1.48502 * 109.46866 * 60.00439 * 22 20 18 26 26 C 1.47476 * 87.83779 * 27.01409 * 16 15 14 27 27 H 1.09003 * 109.47149 * 60.00618 * 1 2 3 28 28 H 1.09004 * 109.47073 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47308 * 300.00363 * 1 2 3 30 30 H 1.07999 * 120.00447 * 0.02562 * 4 3 2 31 31 H 1.09000 * 109.46843 * 210.00094 * 6 5 4 32 32 H 1.09000 * 109.47042 * 329.99392 * 6 5 4 33 33 H 1.09002 * 109.47101 * 0.02562 * 8 7 6 34 34 H 1.09002 * 109.46748 * 119.99996 * 8 7 6 35 35 H 1.08993 * 109.47350 * 239.99747 * 8 7 6 36 36 H 1.08001 * 119.92791 * 180.02562 * 10 5 4 37 37 H 1.07999 * 119.99687 * 180.25653 * 11 10 5 38 38 H 1.09001 * 113.25969 * 23.77133 * 14 13 12 39 39 H 1.09002 * 113.47273 * 332.85354 * 15 14 13 40 40 H 1.08997 * 113.53133 * 202.39298 * 15 14 13 41 41 H 1.09003 * 109.47299 * 49.99518 * 17 16 15 42 42 H 1.09003 * 109.47264 * 290.00250 * 17 16 15 43 43 H 0.97003 * 119.99565 * 179.97438 * 21 20 18 44 44 H 1.08995 * 113.48216 * 87.75691 * 26 16 15 45 45 H 1.09010 * 113.47440 * 218.21912 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9223 3.6057 -0.0011 6 6 1.1016 4.8696 -0.0011 7 6 0.8285 5.2912 1.4197 8 6 0.0221 6.5342 1.6950 9 8 1.2565 4.6336 2.3375 10 6 3.3028 3.6798 -0.0005 11 6 4.0603 2.5233 0.0053 12 6 3.4359 1.2863 0.0001 13 8 4.1795 0.1476 0.0006 14 6 5.5943 0.2968 0.1356 15 6 6.3080 -0.9469 0.6838 16 7 6.4133 -1.4327 -0.7047 17 6 7.7302 -2.0343 -0.9535 18 6 7.7189 -2.7337 -2.2883 19 1 6.8232 -2.7313 -2.8917 20 6 8.8524 -3.3759 -2.7398 21 7 9.9434 -3.3784 -2.0052 22 14 8.8382 -4.2435 -4.3940 23 1 10.1695 -4.8514 -4.6455 24 1 7.8022 -5.3074 -4.3860 25 1 8.5314 -3.2618 -5.4651 26 6 6.3848 -0.0242 -1.1406 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2146 2.3196 -0.0005 31 1 1.6499 5.6588 -0.5153 32 1 0.1571 4.6895 -0.5146 33 1 -0.2752 6.9910 0.7510 34 1 -0.8677 6.2707 2.2668 35 1 0.6254 7.2396 2.2663 36 1 3.7907 4.6434 -0.0005 37 1 5.1385 2.5841 0.0099 38 1 5.8845 1.2284 0.6214 39 1 5.6732 -1.5691 1.3146 40 1 7.2727 -0.7285 1.1417 41 1 7.9548 -2.7552 -0.1674 42 1 8.4910 -1.2537 -0.9587 43 1 10.7407 -3.8305 -2.3226 44 1 7.3698 0.4414 -1.1700 45 1 5.8150 0.1356 -2.0561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228248589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:02 Heat of formation + Delta-G solvation = -37.151127 kcal Electronic energy + Delta-G solvation = -26182.387507 eV Core-core repulsion = 22360.712220 eV Total energy + Delta-G solvation = -3821.675287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.78895 -39.83283 -39.30048 -37.63489 -36.56819 -32.88256 -32.46529 -30.55246 -30.34012 -29.18308 -27.86351 -26.40712 -25.54629 -25.16200 -22.85294 -22.00003 -21.35635 -19.99144 -19.45650 -18.27056 -17.13027 -16.54429 -16.30971 -16.16772 -15.79341 -15.45850 -15.43026 -15.30290 -14.99804 -14.64986 -14.41474 -13.93428 -13.84098 -13.54033 -13.29897 -13.10205 -12.87818 -12.58718 -12.30795 -12.21673 -12.02053 -11.90429 -11.69321 -11.60894 -11.26698 -11.08679 -10.92671 -10.86617 -10.48138 -10.30190 -10.07787 -9.87629 -9.62066 -9.23753 -8.70990 -8.39826 -7.80709 -7.67505 -6.00468 -4.01134 1.23999 1.38643 1.65174 3.27078 3.28271 3.36935 3.39801 3.44303 3.51812 3.93565 4.37572 4.45755 4.59124 4.68521 4.75104 4.82512 4.87155 4.93295 4.97750 5.06024 5.07245 5.09073 5.16168 5.19487 5.34611 5.36419 5.40606 5.44560 5.51274 5.62861 5.86369 5.92239 6.07885 6.08529 6.22127 6.23618 6.36850 6.43888 6.65676 6.67240 7.16554 7.20809 7.22194 7.68637 7.75488 7.89961 8.13681 8.49690 9.06447 9.62691 11.10632 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022912 B = 0.002425 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.770384 B =11545.671609 C =11972.169181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.301 6.301 3 C 0.098 3.902 4 C -0.162 4.162 5 C -0.088 4.088 6 C -0.126 4.126 7 C 0.350 3.650 8 C -0.204 4.204 9 O -0.446 6.446 10 C -0.103 4.103 11 C -0.174 4.174 12 C 0.115 3.885 13 O -0.264 6.264 14 C 0.043 3.957 15 C 0.000 4.000 16 N -0.455 5.455 17 C 0.156 3.844 18 C -0.503 4.503 19 H 0.063 0.937 20 C 0.053 3.947 21 N -0.902 5.902 22 Si 0.900 3.100 23 H -0.288 1.288 24 H -0.276 1.276 25 H -0.277 1.277 26 C -0.005 4.005 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.051 0.949 30 H 0.129 0.871 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.139 0.861 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.030 0.970 42 H 0.003 0.997 43 H 0.261 0.739 44 H 0.075 0.925 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.853 21.141 5.825 30.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.214 6.214 3 C 0.053 3.947 4 C -0.180 4.180 5 C -0.088 4.088 6 C -0.164 4.164 7 C 0.225 3.775 8 C -0.261 4.261 9 O -0.318 6.318 10 C -0.121 4.121 11 C -0.193 4.193 12 C 0.068 3.932 13 O -0.176 6.176 14 C -0.014 4.014 15 C -0.129 4.129 16 N -0.178 5.178 17 C 0.030 3.970 18 C -0.541 4.541 19 H 0.081 0.919 20 C -0.148 4.148 21 N -0.541 5.541 22 Si 0.728 3.272 23 H -0.214 1.214 24 H -0.201 1.201 25 H -0.203 1.203 26 C -0.135 4.135 27 H 0.070 0.930 28 H 0.118 0.882 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.140 0.860 37 H 0.157 0.843 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.048 0.952 42 H 0.021 0.979 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.858 19.779 6.022 29.369 hybrid contribution 0.722 0.359 -0.693 1.064 sum -20.136 20.138 5.328 28.972 Atomic orbital electron populations 1.23035 0.79034 1.03930 1.00762 1.86255 1.20593 1.25668 1.88920 1.18191 0.89205 0.85113 1.02237 1.20762 0.99376 0.91010 1.06902 1.18998 0.93537 0.93100 1.03181 1.21129 1.01649 0.96794 0.96794 1.24637 0.76982 0.85243 0.90675 1.22273 1.01806 0.97741 1.04251 1.90466 1.41835 1.51968 1.47526 1.20618 0.92707 0.97818 1.00957 1.21096 1.00747 0.90989 1.06465 1.18391 0.88406 0.86717 0.99681 1.86299 1.17832 1.26935 1.86583 1.23724 0.78964 0.99222 0.99478 1.23995 0.98589 0.94324 0.95983 1.69092 1.33661 1.11522 1.03520 1.20302 0.83773 0.94853 0.98070 1.21071 0.97626 1.32690 1.02747 0.91871 1.25012 0.95431 0.96581 0.97775 1.69953 1.02178 1.44204 1.37805 0.86518 0.76960 0.79880 0.83817 1.21372 1.20123 1.20263 1.24248 0.98813 0.92706 0.97736 0.92961 0.88230 0.93034 0.85289 0.87434 0.87720 0.90007 0.89135 0.89062 0.85985 0.84342 0.89746 0.89683 0.90480 0.95187 0.97874 0.92905 0.90659 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.30 -4.60 10.28 -34.24 -0.35 -4.95 16 3 C 0.10 1.47 6.70 -39.12 -0.26 1.21 16 4 C -0.16 -1.91 8.69 -39.46 -0.34 -2.25 16 5 C -0.09 -0.93 4.37 -104.62 -0.46 -1.39 16 6 C -0.13 -0.81 5.68 -29.04 -0.16 -0.97 16 7 C 0.35 2.65 7.26 -29.04 -0.21 2.44 16 8 C -0.20 -0.79 10.33 36.01 0.37 -0.42 16 9 O -0.45 -5.55 16.77 6.00 0.10 -5.45 16 10 C -0.10 -1.17 9.69 -39.57 -0.38 -1.55 16 11 C -0.17 -2.34 9.02 -39.46 -0.36 -2.70 16 12 C 0.11 1.84 6.69 -39.12 -0.26 1.58 16 13 O -0.26 -4.92 9.97 -34.23 -0.34 -5.26 16 14 C 0.04 0.74 4.07 -26.20 -0.11 0.63 16 15 C 0.00 0.01 7.52 -7.55 -0.06 -0.05 16 16 N -0.45 -10.58 6.32 -246.12 -1.55 -12.14 16 17 C 0.16 4.20 4.57 -4.98 -0.02 4.18 16 18 C -0.50 -14.83 9.39 -34.44 -0.32 -15.16 16 19 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 20 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 22 Si 0.90 22.37 29.54 -169.99 -5.02 17.34 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C -0.01 -0.11 7.55 -7.55 -0.06 -0.16 16 27 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 30 H 0.13 1.18 6.30 -52.49 -0.33 0.85 16 31 H 0.11 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.10 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.08 0.13 8.00 -51.93 -0.42 -0.29 16 34 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.14 1.66 5.89 -52.49 -0.31 1.35 16 38 H 0.08 1.18 5.91 -51.93 -0.31 0.87 16 39 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.08 1.35 7.91 -51.93 -0.41 0.94 16 41 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 42 H 0.00 0.10 7.30 -51.93 -0.38 -0.28 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 44 H 0.08 1.41 7.42 -51.93 -0.39 1.02 16 45 H 0.08 1.63 8.14 -51.92 -0.42 1.21 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -36.58 377.49 -9.16 -45.73 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.67 Total: -2.50 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -1.74 Total: -11.90 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.82 Total: -38.71 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.59 Total: -15.66 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.58 -9.16 -45.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228248589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.580 kcal (2) G-P(sol) polarization free energy of solvation -36.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds