Wall clock time and date at job start Tue Mar 31 2020 12:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35999 * 117.00151 * 2 1 4 4 C 1.38565 * 120.06824 * 359.97438 * 3 2 1 5 5 C 1.38244 * 119.99601 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.92559 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47353 * 89.99872 * 6 5 4 8 8 C 1.50701 * 119.99970 * 179.97438 * 7 6 5 9 9 O 1.20755 * 119.99939 * 0.02562 * 7 6 5 10 10 C 1.38247 * 120.14708 * 359.97438 * 5 4 3 11 11 C 1.38250 * 120.14752 * 359.77127 * 10 5 4 12 12 C 1.38561 * 119.99696 * 0.50298 * 11 10 5 13 13 O 1.35998 * 120.07368 * 179.74326 * 12 11 10 14 14 C 1.42898 * 116.99646 * 5.81693 * 13 12 11 15 15 C 1.53518 * 114.17125 * 156.72817 * 14 13 12 16 16 N 1.47477 * 87.93047 * 87.61669 * 15 14 13 17 17 C 1.46900 * 110.99874 * 138.70596 * 16 15 14 18 18 C 1.50696 * 109.47528 * 169.99786 * 17 16 15 19 19 H 1.08006 * 119.99938 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00614 * 179.97438 * 18 17 16 21 21 N 1.31523 * 119.99396 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00442 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47163 * 180.02562 * 22 20 18 24 24 H 1.48497 * 109.46992 * 300.00310 * 22 20 18 25 25 H 1.48502 * 109.46866 * 60.00439 * 22 20 18 26 26 C 1.47476 * 87.83779 * 27.01409 * 16 15 14 27 27 H 1.09003 * 109.47149 * 60.00618 * 1 2 3 28 28 H 1.09004 * 109.47073 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47308 * 300.00363 * 1 2 3 30 30 H 1.07999 * 120.00447 * 0.02562 * 4 3 2 31 31 H 1.09000 * 109.46843 * 210.00094 * 6 5 4 32 32 H 1.09000 * 109.47042 * 329.99392 * 6 5 4 33 33 H 1.09002 * 109.47101 * 0.02562 * 8 7 6 34 34 H 1.09002 * 109.46748 * 119.99996 * 8 7 6 35 35 H 1.08993 * 109.47350 * 239.99747 * 8 7 6 36 36 H 1.08001 * 119.92791 * 180.02562 * 10 5 4 37 37 H 1.07999 * 119.99687 * 180.25653 * 11 10 5 38 38 H 1.09001 * 113.25969 * 23.77133 * 14 13 12 39 39 H 1.09002 * 113.47273 * 332.85354 * 15 14 13 40 40 H 1.08997 * 113.53133 * 202.39298 * 15 14 13 41 41 H 1.09003 * 109.47299 * 49.99518 * 17 16 15 42 42 H 1.09003 * 109.47264 * 290.00250 * 17 16 15 43 43 H 0.97003 * 119.99565 * 179.97438 * 21 20 18 44 44 H 1.08995 * 113.48216 * 87.75691 * 26 16 15 45 45 H 1.09010 * 113.47440 * 218.21912 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9223 3.6057 -0.0011 6 6 1.1016 4.8696 -0.0011 7 6 0.8285 5.2912 1.4197 8 6 0.0221 6.5342 1.6950 9 8 1.2565 4.6336 2.3375 10 6 3.3028 3.6798 -0.0005 11 6 4.0603 2.5233 0.0053 12 6 3.4359 1.2863 0.0001 13 8 4.1795 0.1476 0.0006 14 6 5.5943 0.2968 0.1356 15 6 6.3080 -0.9469 0.6838 16 7 6.4133 -1.4327 -0.7047 17 6 7.7302 -2.0343 -0.9535 18 6 7.7189 -2.7337 -2.2883 19 1 6.8232 -2.7313 -2.8917 20 6 8.8524 -3.3759 -2.7398 21 7 9.9434 -3.3784 -2.0052 22 14 8.8382 -4.2435 -4.3940 23 1 10.1695 -4.8514 -4.6455 24 1 7.8022 -5.3074 -4.3860 25 1 8.5314 -3.2618 -5.4651 26 6 6.3848 -0.0242 -1.1406 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2146 2.3196 -0.0005 31 1 1.6499 5.6588 -0.5153 32 1 0.1571 4.6895 -0.5146 33 1 -0.2752 6.9910 0.7510 34 1 -0.8677 6.2707 2.2668 35 1 0.6254 7.2396 2.2663 36 1 3.7907 4.6434 -0.0005 37 1 5.1385 2.5841 0.0099 38 1 5.8845 1.2284 0.6214 39 1 5.6732 -1.5691 1.3146 40 1 7.2727 -0.7285 1.1417 41 1 7.9548 -2.7552 -0.1674 42 1 8.4910 -1.2537 -0.9587 43 1 10.7407 -3.8305 -2.3226 44 1 7.3698 0.4414 -1.1700 45 1 5.8150 0.1356 -2.0561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228248589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:02 Heat of formation + Delta-G solvation = -63.248433 kcal Electronic energy + Delta-G solvation = -26183.519171 eV Core-core repulsion = 22360.712220 eV Total energy + Delta-G solvation = -3822.806951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.89790 -40.96439 -40.21397 -38.79636 -37.68580 -35.04038 -33.27308 -31.49392 -31.25126 -30.72445 -28.64102 -27.44893 -27.16218 -26.76544 -24.27187 -23.03066 -22.88480 -20.85266 -20.53653 -19.40209 -18.56818 -18.08842 -17.60722 -17.14358 -16.85726 -16.54272 -16.29455 -16.22361 -16.12184 -16.03367 -15.80232 -15.25745 -14.95046 -14.91569 -14.52227 -14.19258 -13.88546 -13.66930 -13.28774 -13.23504 -13.04561 -13.00352 -12.86305 -12.74454 -12.61748 -12.43990 -12.30333 -12.15730 -12.00190 -11.92341 -11.54047 -11.45092 -11.26669 -10.63733 -10.58041 -9.65099 -9.61864 -8.72775 -8.25134 -6.35340 0.29103 0.43120 1.12082 1.37165 1.41172 1.49460 2.07095 2.37630 2.39644 2.64329 3.06280 3.29574 3.30897 3.39879 3.68734 3.70027 3.94033 3.99107 4.16008 4.28194 4.34075 4.37682 4.38911 4.40492 4.43420 4.54536 4.57992 4.61111 4.65031 4.69854 4.74629 4.78379 4.84114 4.89275 4.91738 5.01589 5.15121 5.28549 5.29689 5.54791 5.55250 5.75258 5.77799 6.04878 6.18541 6.43014 6.67344 6.70061 6.77739 7.33781 8.85624 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022912 B = 0.002425 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.770384 B =11545.671609 C =11972.169181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.076 3.924 4 C -0.163 4.163 5 C -0.082 4.082 6 C -0.127 4.127 7 C 0.355 3.645 8 C -0.198 4.198 9 O -0.505 6.505 10 C -0.110 4.110 11 C -0.177 4.177 12 C 0.069 3.931 13 O -0.296 6.296 14 C 0.068 3.932 15 C -0.001 4.001 16 N -0.487 5.487 17 C 0.173 3.827 18 C -0.530 4.530 19 H 0.052 0.948 20 C 0.003 3.997 21 N -0.931 5.931 22 Si 0.971 3.029 23 H -0.277 1.277 24 H -0.272 1.272 25 H -0.267 1.267 26 C -0.006 4.006 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.155 0.845 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.002 0.998 42 H -0.010 1.010 43 H 0.267 0.733 44 H 0.084 0.916 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.702 23.954 4.846 33.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.031 3.969 4 C -0.182 4.182 5 C -0.082 4.082 6 C -0.164 4.164 7 C 0.234 3.766 8 C -0.255 4.255 9 O -0.382 6.382 10 C -0.128 4.128 11 C -0.195 4.195 12 C 0.024 3.976 13 O -0.209 6.209 14 C 0.011 3.989 15 C -0.130 4.130 16 N -0.210 5.210 17 C 0.046 3.954 18 C -0.568 4.568 19 H 0.070 0.930 20 C -0.196 4.196 21 N -0.571 5.571 22 Si 0.795 3.205 23 H -0.201 1.201 24 H -0.197 1.197 25 H -0.192 1.192 26 C -0.135 4.135 27 H 0.089 0.911 28 H 0.129 0.871 29 H 0.082 0.918 30 H 0.172 0.828 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.132 0.868 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.169 0.831 37 H 0.165 0.835 38 H 0.138 0.862 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.020 0.980 42 H 0.007 0.993 43 H 0.075 0.925 44 H 0.102 0.898 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.742 22.628 5.037 32.475 hybrid contribution 1.156 -0.404 -0.358 1.276 sum -21.586 22.224 4.679 31.333 Atomic orbital electron populations 1.23311 0.76684 1.05256 1.02198 1.86189 1.23283 1.26631 1.89253 1.18573 0.89307 0.86022 1.03019 1.21123 1.00568 0.90484 1.06011 1.19576 0.93909 0.94553 1.00191 1.21340 1.02813 0.95375 0.96839 1.25223 0.75639 0.85442 0.90324 1.22287 1.01192 0.95917 1.06115 1.90473 1.44548 1.54055 1.49143 1.21040 0.93334 0.98265 1.00150 1.21304 1.01449 0.90828 1.05965 1.18803 0.89004 0.86806 1.02999 1.86233 1.18117 1.29027 1.87573 1.23477 0.78746 0.99526 0.97146 1.24064 0.99708 0.95323 0.93952 1.68999 1.31179 1.14059 1.06789 1.19970 0.85440 0.93806 0.96215 1.21359 0.97611 1.33870 1.03943 0.92986 1.25922 0.94823 0.97017 1.01801 1.70060 1.02768 1.44675 1.39607 0.85418 0.77431 0.78731 0.78933 1.20148 1.19681 1.19216 1.24261 0.99702 0.90724 0.98811 0.91149 0.87147 0.91781 0.82788 0.84288 0.84652 0.86850 0.88782 0.88759 0.83140 0.83483 0.86165 0.89947 0.88953 0.97951 0.99265 0.92472 0.89796 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.49 16 2 O -0.34 -10.67 10.28 -79.68 -0.82 -11.49 16 3 C 0.08 2.30 6.70 22.57 0.15 2.45 16 4 C -0.16 -3.61 8.69 22.35 0.19 -3.42 16 5 C -0.08 -1.53 4.37 -19.86 -0.09 -1.62 16 6 C -0.13 -1.08 5.68 29.10 0.17 -0.91 16 7 C 0.36 4.29 7.26 29.10 0.21 4.50 16 8 C -0.20 -0.79 10.33 71.24 0.74 -0.06 16 9 O -0.51 -11.91 16.77 -1.44 -0.02 -11.93 16 10 C -0.11 -2.27 9.69 22.27 0.22 -2.05 16 11 C -0.18 -4.63 9.02 22.35 0.20 -4.42 16 12 C 0.07 2.26 6.69 22.57 0.15 2.41 16 13 O -0.30 -11.43 9.97 -79.67 -0.79 -12.22 16 14 C 0.07 2.35 4.07 30.94 0.13 2.48 16 15 C 0.00 -0.06 7.52 83.58 0.63 0.57 16 16 N -0.49 -23.63 6.32 -932.97 -5.89 -29.52 16 17 C 0.17 9.71 4.57 85.56 0.39 10.10 16 18 C -0.53 -32.24 9.39 25.60 0.24 -32.00 16 19 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 20 C 0.00 0.16 5.46 84.65 0.46 0.62 16 21 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 22 Si 0.97 46.25 29.54 68.60 2.03 48.27 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 26 C -0.01 -0.23 7.55 83.57 0.63 0.41 16 27 H 0.07 1.03 7.66 -2.39 -0.02 1.01 16 28 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.06 1.01 7.66 -2.39 -0.02 0.99 16 30 H 0.15 2.44 6.30 -2.91 -0.02 2.42 16 31 H 0.14 0.39 8.08 -2.39 -0.02 0.37 16 32 H 0.14 0.40 8.08 -2.39 -0.02 0.38 16 33 H 0.11 -0.25 8.00 -2.39 -0.02 -0.27 16 34 H 0.09 0.37 8.14 -2.39 -0.02 0.36 16 35 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.15 3.37 5.89 -2.91 -0.02 3.36 16 38 H 0.12 3.25 5.91 -2.39 -0.01 3.24 16 39 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.09 3.29 7.91 -2.39 -0.02 3.27 16 41 H 0.00 0.14 8.08 -2.39 -0.02 0.12 16 42 H -0.01 -0.60 7.30 -2.39 -0.02 -0.61 16 43 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.08 3.20 7.42 -2.39 -0.02 3.18 16 45 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 Total: -1.00 -84.09 377.49 1.30 -82.79 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.99 Total: 10.58 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 5.53 Total: -19.46 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -5.61 Total: -86.54 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -1.64 Total: -35.64 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -84.09 1.30 -82.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228248589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.537 kcal (2) G-P(sol) polarization free energy of solvation -84.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds