Wall clock time and date at job start Tue Mar 31 2020 12:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20757 * 120.00128 * 2 1 4 4 C 1.50702 * 119.99902 * 179.97438 * 2 1 3 5 5 C 1.53004 * 109.46703 * 180.02562 * 4 2 1 6 6 C 1.50707 * 109.46917 * 180.02562 * 5 4 2 7 7 C 1.38247 * 119.92993 * 89.99788 * 6 5 4 8 8 C 1.38244 * 120.14708 * 180.02562 * 7 6 5 9 9 C 1.38565 * 119.99601 * 359.97438 * 8 7 6 10 10 O 1.35996 * 120.07179 * 179.97438 * 9 8 7 11 11 C 1.39153 * 119.85798 * 0.02562 * 9 8 7 12 12 O 1.35998 * 120.07334 * 180.02562 * 11 9 8 13 13 C 1.42898 * 116.99646 * 186.08454 * 12 11 9 14 14 C 1.53518 * 114.17125 * 156.72817 * 13 12 11 15 15 N 1.47477 * 87.93047 * 87.61669 * 14 13 12 16 16 C 1.46900 * 110.99874 * 138.70596 * 15 14 13 17 17 C 1.50697 * 109.47538 * 170.00182 * 16 15 14 18 18 H 1.08005 * 119.99834 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00560 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99776 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00387 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47170 * 179.97438 * 21 19 17 23 23 H 1.48504 * 109.47004 * 299.99736 * 21 19 17 24 24 H 1.48502 * 109.47122 * 59.99739 * 21 19 17 25 25 C 1.47476 * 87.83779 * 27.01409 * 15 14 13 26 26 C 1.38250 * 119.92208 * 270.24867 * 6 5 4 27 27 H 1.09000 * 109.46877 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47234 * 300.00272 * 1 2 3 29 29 H 1.09002 * 109.47302 * 60.00432 * 1 2 3 30 30 H 1.08991 * 109.47078 * 60.00550 * 4 2 1 31 31 H 1.08994 * 109.47061 * 300.00099 * 4 2 1 32 32 H 1.08996 * 109.47851 * 59.99839 * 5 4 2 33 33 H 1.09007 * 109.46884 * 299.99836 * 5 4 2 34 34 H 1.07998 * 119.92533 * 0.02562 * 7 6 5 35 35 H 1.07991 * 119.99880 * 179.97438 * 8 7 6 36 36 H 0.96709 * 113.99709 * 270.02523 * 10 9 8 37 37 H 1.09001 * 113.25969 * 23.77133 * 13 12 11 38 38 H 1.09002 * 113.47273 * 332.85354 * 14 13 12 39 39 H 1.08997 * 113.53133 * 202.39298 * 14 13 12 40 40 H 1.09000 * 109.47303 * 50.00036 * 16 15 14 41 41 H 1.09010 * 109.47173 * 289.99893 * 16 15 14 42 42 H 0.97002 * 120.00463 * 180.02562 * 20 19 17 43 43 H 1.08995 * 113.48216 * 87.75691 * 25 15 14 44 44 H 1.09002 * 113.47728 * 218.21965 * 25 15 14 45 45 H 1.08007 * 119.99808 * 0.02671 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0255 0.0011 6 6 4.5183 -2.3306 0.0011 7 6 4.8635 -2.9277 -1.1971 8 6 5.5543 -4.1252 -1.2024 9 6 5.9026 -4.7293 -0.0050 10 8 6.5817 -5.9076 -0.0084 11 6 5.5551 -4.1283 1.2010 12 8 5.8953 -4.7171 2.3788 13 6 5.3919 -4.1161 3.5736 14 6 5.3115 -5.0719 4.7723 15 7 6.7067 -4.7109 5.0855 16 6 6.8931 -4.5359 6.5320 17 6 8.3635 -4.4122 6.8378 18 1 9.0873 -4.4594 6.0376 19 6 8.7850 -4.2398 8.1392 20 7 7.9038 -4.1829 9.1137 21 14 10.6078 -4.0872 8.5183 22 1 10.7962 -3.9101 9.9806 23 1 11.3106 -5.3176 8.0736 24 1 11.1657 -2.9121 7.8019 25 6 6.4614 -3.4160 4.4237 26 6 4.8582 -2.9307 1.1992 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.9972 -1.8770 -0.8891 31 1 1.9971 -1.8763 0.8908 32 1 4.0278 -0.4537 0.8910 33 1 4.0283 -0.4541 -0.8890 34 1 4.5929 -2.4576 -2.1310 35 1 5.8224 -4.5897 -2.1397 36 1 6.0126 -6.6895 -0.0096 37 1 4.4897 -3.5264 3.4117 38 1 5.1869 -6.1165 4.4870 39 1 4.5995 -4.7552 5.5343 40 1 6.4839 -5.3984 7.0581 41 1 6.3770 -3.6328 6.8583 42 1 8.2002 -4.0613 10.0293 43 1 6.0562 -2.6565 5.0922 44 1 7.3113 -3.0572 3.8431 45 1 4.5834 -2.4643 2.1339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230392886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:30 Heat of formation + Delta-G solvation = -80.977413 kcal Electronic energy + Delta-G solvation = -25971.340149 eV Core-core repulsion = 22147.764412 eV Total energy + Delta-G solvation = -3823.575737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.85778 -40.70915 -40.28445 -38.10774 -37.89659 -35.05123 -34.26619 -31.60486 -31.46151 -30.79586 -29.23379 -27.43033 -26.88956 -25.29565 -24.32609 -23.22847 -22.23253 -20.83378 -20.43651 -19.63905 -18.59578 -18.27600 -17.47751 -17.07247 -16.83519 -16.59794 -16.42408 -16.21968 -16.00030 -15.91292 -15.58919 -15.04034 -14.98398 -14.72970 -14.44705 -14.16165 -13.92080 -13.63860 -13.38967 -13.18112 -13.11818 -12.95594 -12.88808 -12.87379 -12.46191 -12.43911 -12.29152 -12.13618 -11.91254 -11.58081 -11.49121 -11.41674 -11.26627 -10.64822 -10.60111 -9.70189 -9.62921 -9.02199 -8.26610 -6.36516 0.20985 0.40135 1.06865 1.36456 1.39679 1.48099 2.02817 2.36398 2.59803 3.05160 3.17022 3.27188 3.29677 3.32268 3.72808 3.85517 3.92741 4.02102 4.10277 4.24886 4.33894 4.39967 4.43723 4.45668 4.49714 4.57280 4.65189 4.67210 4.69590 4.83846 4.84329 4.89884 4.93511 4.97493 5.00763 5.20474 5.22260 5.26131 5.34852 5.54071 5.61137 5.74413 5.80593 6.03873 6.34890 6.43562 6.63383 6.76692 6.93272 7.32839 8.84083 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.002691 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.251780 B =10403.290988 C =11725.371743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.356 3.644 3 O -0.510 6.510 4 C -0.164 4.164 5 C -0.071 4.071 6 C -0.049 4.049 7 C -0.135 4.135 8 C -0.101 4.101 9 C 0.050 3.950 10 O -0.505 6.505 11 C 0.085 3.915 12 O -0.292 6.292 13 C 0.070 3.930 14 C 0.001 3.999 15 N -0.488 5.488 16 C 0.173 3.827 17 C -0.531 4.531 18 H 0.050 0.950 19 C 0.005 3.995 20 N -0.930 5.930 21 Si 0.968 3.032 22 H -0.276 1.276 23 H -0.271 1.271 24 H -0.270 1.270 25 C -0.011 4.011 26 C -0.198 4.198 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.401 0.599 37 H 0.124 0.876 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.005 0.995 41 H -0.011 1.011 42 H 0.267 0.733 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.331 3.669 -24.014 30.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.236 3.764 3 O -0.387 6.387 4 C -0.201 4.201 5 C -0.109 4.109 6 C -0.049 4.049 7 C -0.153 4.153 8 C -0.120 4.120 9 C 0.004 3.996 10 O -0.317 6.317 11 C 0.040 3.960 12 O -0.205 6.205 13 C 0.013 3.987 14 C -0.128 4.128 15 N -0.210 5.210 16 C 0.046 3.954 17 C -0.569 4.569 18 H 0.069 0.931 19 C -0.193 4.193 20 N -0.571 5.571 21 Si 0.792 3.208 22 H -0.201 1.201 23 H -0.196 1.196 24 H -0.195 1.195 25 C -0.141 4.141 26 C -0.217 4.217 27 H 0.126 0.874 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.145 0.855 31 H 0.133 0.867 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.173 0.827 35 H 0.174 0.826 36 H 0.258 0.742 37 H 0.142 0.858 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.023 0.977 41 H 0.006 0.994 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.847 3.964 -23.943 29.543 hybrid contribution 0.110 0.211 1.395 1.415 sum -16.736 4.175 -22.549 28.390 Atomic orbital electron populations 1.22303 0.92086 1.06493 1.05075 1.25209 0.93396 0.89844 0.67976 1.90432 1.73053 1.36912 1.38311 1.22229 0.93583 0.97308 1.06976 1.20390 0.94058 0.92714 1.03694 1.19779 0.96969 0.96028 0.92108 1.21127 1.00219 0.95468 0.98489 1.21454 0.97170 0.96582 0.96761 1.18122 1.00861 0.90401 0.90173 1.84876 1.35985 1.14579 1.96240 1.19883 0.96334 0.93982 0.85826 1.86238 1.69946 1.52365 1.11997 1.23486 0.96740 0.95641 0.82825 1.24064 0.92319 1.01449 0.94953 1.69000 1.21715 1.17698 1.12632 1.19963 0.96422 0.94240 0.84790 1.21368 0.93109 1.49588 0.92821 0.93132 1.25873 1.02920 0.94684 0.95869 1.70040 1.35786 1.50845 1.00387 0.85467 0.79175 0.78971 0.77207 1.20086 1.19583 1.19488 1.24277 0.98868 0.93748 0.97157 1.21212 1.04459 0.95790 1.00229 0.87431 0.88957 0.88433 0.85505 0.86722 0.91767 0.90147 0.82663 0.82647 0.74186 0.85827 0.89278 0.88953 0.97671 0.99365 0.92439 0.90061 0.91480 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.15 10.33 71.24 0.74 -0.41 16 2 C 0.36 4.38 7.27 29.10 0.21 4.60 16 3 O -0.51 -11.20 16.72 -1.44 -0.02 -11.23 16 4 C -0.16 -1.47 5.53 29.85 0.17 -1.31 16 5 C -0.07 -1.05 4.63 29.85 0.14 -0.91 16 6 C -0.05 -0.85 5.13 -19.86 -0.10 -0.95 16 7 C -0.14 -2.06 9.69 22.27 0.22 -1.84 16 8 C -0.10 -1.83 9.98 22.35 0.22 -1.61 16 9 C 0.05 1.24 6.72 22.57 0.15 1.39 16 10 O -0.51 -13.09 13.29 -79.64 -1.06 -14.14 16 11 C 0.09 2.35 6.69 22.57 0.15 2.50 16 12 O -0.29 -9.78 9.97 -79.66 -0.79 -10.57 16 13 C 0.07 2.15 4.07 30.94 0.13 2.28 16 14 C 0.00 0.04 7.52 83.58 0.63 0.67 16 15 N -0.49 -22.56 6.32 -932.98 -5.89 -28.45 16 16 C 0.17 9.46 4.57 85.56 0.39 9.85 16 17 C -0.53 -31.91 9.39 25.60 0.24 -31.67 16 18 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 19 C 0.00 0.29 5.46 84.65 0.46 0.75 16 20 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 21 Si 0.97 46.02 29.54 68.60 2.03 48.05 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 C -0.01 -0.43 7.55 83.57 0.63 0.20 16 26 C -0.20 -4.40 8.68 22.35 0.19 -4.20 16 27 H 0.11 0.07 8.00 -2.39 -0.02 0.05 16 28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 1.16 8.04 -2.39 -0.02 1.14 16 33 H 0.08 1.19 8.04 -2.38 -0.02 1.17 16 34 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.16 2.04 8.06 -2.92 -0.02 2.02 16 36 H 0.40 6.54 9.07 -74.05 -0.67 5.87 16 37 H 0.12 2.83 5.91 -2.39 -0.01 2.81 16 38 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 39 H 0.09 2.96 7.91 -2.39 -0.02 2.95 16 40 H 0.01 0.30 8.08 -2.39 -0.02 0.28 16 41 H -0.01 -0.64 7.30 -2.38 -0.02 -0.66 16 42 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 43 H 0.08 3.03 7.42 -2.39 -0.02 3.01 16 44 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 45 H 0.14 2.83 5.89 -2.91 -0.02 2.81 16 Total: -1.00 -79.87 380.40 -0.56 -80.44 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.33 Total: 12.94 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 4.56 Total: -20.68 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -5.61 Total: -84.81 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -1.88 Total: -35.94 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -79.87 -0.56 -80.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230392886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.539 kcal (2) G-P(sol) polarization free energy of solvation -79.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds