Wall clock time and date at job start Tue Mar 31 2020 13:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47104 * 2 1 4 4 C 1.34749 * 116.99855 * 179.97438 * 3 2 1 5 5 O 1.21501 * 120.00060 * 0.02562 * 4 3 2 6 6 C 1.47467 * 120.00059 * 180.02562 * 4 3 2 7 7 C 1.39818 * 120.09279 * 354.14765 * 6 4 3 8 8 C 1.37651 * 119.90740 * 180.02562 * 7 6 4 9 9 C 1.39042 * 120.09356 * 359.97438 * 8 7 6 10 10 O 1.35705 * 119.90671 * 180.02562 * 9 8 7 11 11 C 1.42901 * 116.99817 * 3.42423 * 10 9 8 12 12 H 1.09002 * 110.88275 * 42.00874 * 11 10 9 13 13 C 1.55161 * 111.00079 * 165.92258 * 11 10 9 14 14 C 1.54333 * 103.01784 * 153.37919 * 13 11 10 15 15 N 1.47017 * 107.26649 * 338.14828 * 14 13 11 16 16 C 1.36940 * 125.64418 * 178.84949 * 15 14 13 17 17 H 1.08006 * 119.99761 * 179.68902 * 16 15 14 18 18 C 1.38811 * 120.00312 * 359.68624 * 16 15 14 19 19 N 1.31618 * 119.99706 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00050 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46974 * 179.97438 * 20 18 16 22 22 H 1.48504 * 109.46944 * 299.99938 * 20 18 16 23 23 H 1.48501 * 109.47075 * 59.99995 * 20 18 16 24 24 C 1.47425 * 108.70443 * 358.57991 * 15 14 13 25 25 C 1.38992 * 120.18509 * 0.27402 * 9 8 7 26 26 C 1.37702 * 120.09118 * 359.44929 * 25 9 8 27 27 C 1.50700 * 120.04580 * 180.27819 * 26 25 9 28 28 H 1.09000 * 109.47166 * 59.99291 * 1 2 3 29 29 H 1.08996 * 109.47310 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47112 * 300.00172 * 1 2 3 31 31 H 1.09008 * 109.46855 * 240.00636 * 2 1 3 32 32 H 1.08993 * 109.47028 * 120.00332 * 2 1 3 33 33 H 1.07998 * 120.04420 * 359.97438 * 7 6 4 34 34 H 1.07996 * 119.95849 * 179.97438 * 8 7 6 35 35 H 1.08999 * 110.72442 * 271.94469 * 13 11 10 36 36 H 1.09011 * 110.71316 * 35.04122 * 13 11 10 37 37 H 1.09002 * 109.99215 * 218.66396 * 14 13 11 38 38 H 1.09011 * 109.77285 * 97.50241 * 14 13 11 39 39 H 0.97002 * 119.99996 * 180.02562 * 19 18 16 40 40 H 1.09002 * 110.36306 * 143.20199 * 24 15 14 41 41 H 1.09000 * 110.36672 * 265.52155 * 24 15 14 42 42 H 1.07997 * 119.95366 * 179.70768 * 25 9 8 43 43 H 1.09001 * 109.47060 * 262.85618 * 27 26 25 44 44 H 1.09007 * 109.47372 * 22.85185 * 27 26 25 45 45 H 1.09001 * 109.47282 * 142.85856 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3499 1.5455 0.0005 5 8 4.0900 0.5819 0.0005 6 6 3.9136 2.9082 0.0011 7 6 3.0696 4.0160 -0.1222 8 6 3.5999 5.2863 -0.1217 9 6 4.9728 5.4685 0.0017 10 8 5.4915 6.7226 0.0023 11 6 4.5639 7.8083 -0.0517 12 1 3.7099 7.6224 0.5997 13 6 5.2564 9.1496 0.3070 14 6 4.3969 10.1942 -0.4360 15 7 3.6964 9.4910 -1.5205 16 6 2.8150 10.0591 -2.4012 17 1 2.3545 9.4554 -3.1694 18 6 2.5133 11.4107 -2.3068 19 7 3.0748 12.1464 -1.3710 20 14 1.3104 12.1854 -3.5078 21 1 1.1603 13.6295 -3.1959 22 1 1.8231 12.0282 -4.8926 23 1 -0.0090 11.5142 -3.3892 24 6 4.1048 8.0746 -1.5069 25 6 5.8158 4.3698 0.1194 26 6 5.2930 3.0959 0.1255 27 6 6.2075 1.9056 0.2594 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0031 3.8752 -0.2185 34 1 2.9488 6.1425 -0.2173 35 1 5.2312 9.3210 1.3832 36 1 6.2826 9.1641 -0.0605 37 1 5.0349 10.9744 -0.8512 38 1 3.6724 10.6316 0.2511 39 1 2.8637 13.0909 -1.3047 40 1 3.2606 7.4339 -1.7617 41 1 4.9294 7.9109 -2.2008 42 1 6.8821 4.5155 0.2103 43 1 6.4198 1.4975 -0.7287 44 1 7.1395 2.2148 0.7327 45 1 5.7247 1.1435 0.8712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233805596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:33 Heat of formation + Delta-G solvation = -72.484400 kcal Electronic energy + Delta-G solvation = -26380.083062 eV Core-core repulsion = 22556.875609 eV Total energy + Delta-G solvation = -3823.207453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.87252 -39.99279 -38.11055 -36.75620 -36.13995 -32.70197 -32.45473 -31.97638 -30.50985 -29.25023 -27.92241 -26.87635 -24.78106 -24.16914 -23.07259 -22.09006 -21.27132 -20.25248 -19.87202 -18.09749 -17.75995 -17.19821 -16.77557 -16.71953 -15.78754 -15.25279 -14.77062 -14.69775 -14.51199 -14.17984 -14.00100 -13.66717 -13.34701 -13.28450 -13.13813 -12.88416 -12.67211 -12.42253 -12.29509 -12.19594 -12.05951 -11.90630 -11.85411 -11.49302 -11.03829 -10.95210 -10.80875 -10.74773 -10.42380 -10.33303 -10.20437 -10.15022 -9.97056 -9.76510 -8.93945 -8.68730 -8.26735 -6.95869 -5.80084 -3.15166 0.72136 1.25558 2.47730 2.51250 3.23961 3.36706 3.41264 3.42467 3.67033 4.43113 4.53798 4.64240 4.68780 4.70519 4.72062 4.96560 4.98214 5.10602 5.22733 5.25580 5.29065 5.41106 5.46035 5.47578 5.51874 5.57982 5.63076 5.67146 5.68144 5.82921 5.96257 6.06048 6.13066 6.21780 6.24372 6.29012 6.34403 6.46841 6.49009 6.52923 6.69647 7.44289 7.47568 7.51219 7.66950 7.72247 8.14579 9.11641 9.71213 10.34967 11.31640 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015730 B = 0.002778 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.575638 B =10075.786647 C =11509.995056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.356 6.356 4 C 0.516 3.484 5 O -0.512 6.512 6 C -0.187 4.187 7 C -0.013 4.013 8 C -0.229 4.229 9 C 0.188 3.812 10 O -0.298 6.298 11 C 0.062 3.938 12 H 0.083 0.917 13 C -0.134 4.134 14 C 0.178 3.822 15 N -0.602 5.602 16 C -0.233 4.233 17 H 0.079 0.921 18 C -0.005 4.005 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.289 1.289 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.117 3.883 25 C -0.177 4.177 26 C 0.021 3.979 27 C -0.121 4.121 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.255 0.745 40 H 0.046 0.954 41 H 0.030 0.970 42 H 0.139 0.861 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.626 -20.917 5.746 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.273 6.273 4 C 0.363 3.637 5 O -0.403 6.403 6 C -0.189 4.189 7 C -0.031 4.031 8 C -0.247 4.247 9 C 0.140 3.860 10 O -0.210 6.210 11 C 0.005 3.995 12 H 0.101 0.899 13 C -0.172 4.172 14 C 0.053 3.947 15 N -0.329 5.329 16 C -0.361 4.361 17 H 0.097 0.903 18 C -0.202 4.202 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.215 1.215 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.010 4.010 25 C -0.196 4.196 26 C 0.020 3.980 27 C -0.177 4.177 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.157 0.843 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.920 -20.913 5.719 21.700 hybrid contribution -0.865 0.450 -0.688 1.193 sum 0.056 -20.463 5.031 21.072 Atomic orbital electron populations 1.21814 0.92612 1.02924 1.03712 1.22999 0.95326 0.80157 1.02514 1.86566 1.24129 1.32217 1.84430 1.21071 0.80290 0.89847 0.72475 1.90771 1.59726 1.42877 1.46912 1.18726 0.93426 0.89922 1.16776 1.21200 0.99929 0.90759 0.91232 1.21477 0.94564 0.98835 1.09867 1.19421 0.91837 0.85350 0.89420 1.86092 1.37062 1.11930 1.85891 1.23977 0.91551 0.84467 0.99471 0.89867 1.23030 1.00614 0.92670 1.00878 1.21227 0.93302 0.90969 0.89158 1.44329 1.50621 1.02373 1.35620 1.19012 1.16938 0.92328 1.07821 0.90304 1.24820 1.00247 0.96240 0.98889 1.69925 1.46087 1.06510 1.34396 0.86157 0.80686 0.78289 0.80370 1.21507 1.21059 1.21046 1.22014 0.97690 0.88576 0.92725 1.20215 1.00189 0.89157 1.10028 1.19696 0.92030 0.94793 0.91459 1.21106 0.97621 0.95453 1.03506 0.91354 0.90277 0.91400 0.91254 0.91291 0.84371 0.83832 0.91168 0.91037 0.93147 0.92909 0.93505 0.93627 0.95193 0.84342 0.90348 0.91870 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.57 16 2 C 0.06 0.55 6.20 37.16 0.23 0.78 16 3 O -0.36 -4.07 9.48 -40.62 -0.39 -4.45 16 4 C 0.52 6.64 7.82 34.49 0.27 6.91 16 5 O -0.51 -7.12 13.13 -19.27 -0.25 -7.38 16 6 C -0.19 -2.43 5.87 -104.97 -0.62 -3.05 16 7 C -0.01 -0.16 9.61 -39.21 -0.38 -0.54 16 8 C -0.23 -3.17 8.59 -39.50 -0.34 -3.51 16 9 C 0.19 2.74 6.61 -39.00 -0.26 2.48 16 10 O -0.30 -4.85 9.96 -18.82 -0.19 -5.03 16 11 C 0.06 1.08 2.84 -24.59 -0.07 1.01 16 12 H 0.08 1.38 6.74 -51.93 -0.35 1.03 16 13 C -0.13 -2.44 6.68 -24.89 -0.17 -2.60 16 14 C 0.18 4.17 5.37 -3.06 -0.02 4.15 16 15 N -0.60 -15.00 3.39 -170.07 -0.58 -15.57 16 16 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 17 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 18 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 19 N -0.92 -26.39 10.31 55.49 0.57 -25.82 16 20 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.12 2.38 6.48 -2.53 -0.02 2.37 16 25 C -0.18 -2.30 9.59 -39.50 -0.38 -2.68 16 26 C 0.02 0.26 5.91 -104.25 -0.62 -0.36 16 27 C -0.12 -1.30 8.69 36.01 0.31 -0.99 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.14 1.51 7.62 -52.49 -0.40 1.11 16 34 H 0.14 2.03 5.18 -52.49 -0.27 1.76 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 37 H 0.05 1.30 7.52 -51.93 -0.39 0.91 16 38 H 0.05 1.35 7.37 -51.92 -0.38 0.96 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 40 H 0.05 0.89 7.02 -51.93 -0.36 0.53 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.14 1.57 8.05 -52.49 -0.42 1.15 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.56 8.03 -51.92 -0.42 0.14 16 45 H 0.09 1.07 5.91 -51.93 -0.31 0.77 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -30.34 366.32 -8.90 -39.24 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.66 Total: 0.23 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.91 Total: -3.36 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.00 Total: -41.39 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.83 Total: -16.86 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.34 -8.90 -39.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233805596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.242 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds