Wall clock time and date at job start Tue Mar 31 2020 13:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47104 * 2 1 4 4 C 1.34749 * 116.99855 * 179.97438 * 3 2 1 5 5 O 1.21501 * 120.00060 * 0.02562 * 4 3 2 6 6 C 1.47467 * 120.00059 * 180.02562 * 4 3 2 7 7 C 1.39818 * 120.09279 * 354.14765 * 6 4 3 8 8 C 1.37651 * 119.90740 * 180.02562 * 7 6 4 9 9 C 1.39042 * 120.09356 * 359.97438 * 8 7 6 10 10 O 1.35705 * 119.90671 * 180.02562 * 9 8 7 11 11 C 1.42901 * 116.99817 * 3.42423 * 10 9 8 12 12 H 1.09002 * 110.88275 * 42.00874 * 11 10 9 13 13 C 1.55161 * 111.00079 * 165.92258 * 11 10 9 14 14 C 1.54333 * 103.01784 * 153.37919 * 13 11 10 15 15 N 1.47017 * 107.26649 * 338.14828 * 14 13 11 16 16 C 1.36940 * 125.64418 * 178.84949 * 15 14 13 17 17 H 1.08006 * 119.99761 * 179.68902 * 16 15 14 18 18 C 1.38811 * 120.00312 * 359.68624 * 16 15 14 19 19 N 1.31618 * 119.99706 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00050 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46974 * 179.97438 * 20 18 16 22 22 H 1.48504 * 109.46944 * 299.99938 * 20 18 16 23 23 H 1.48501 * 109.47075 * 59.99995 * 20 18 16 24 24 C 1.47425 * 108.70443 * 358.57991 * 15 14 13 25 25 C 1.38992 * 120.18509 * 0.27402 * 9 8 7 26 26 C 1.37702 * 120.09118 * 359.44929 * 25 9 8 27 27 C 1.50700 * 120.04580 * 180.27819 * 26 25 9 28 28 H 1.09000 * 109.47166 * 59.99291 * 1 2 3 29 29 H 1.08996 * 109.47310 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47112 * 300.00172 * 1 2 3 31 31 H 1.09008 * 109.46855 * 240.00636 * 2 1 3 32 32 H 1.08993 * 109.47028 * 120.00332 * 2 1 3 33 33 H 1.07998 * 120.04420 * 359.97438 * 7 6 4 34 34 H 1.07996 * 119.95849 * 179.97438 * 8 7 6 35 35 H 1.08999 * 110.72442 * 271.94469 * 13 11 10 36 36 H 1.09011 * 110.71316 * 35.04122 * 13 11 10 37 37 H 1.09002 * 109.99215 * 218.66396 * 14 13 11 38 38 H 1.09011 * 109.77285 * 97.50241 * 14 13 11 39 39 H 0.97002 * 119.99996 * 180.02562 * 19 18 16 40 40 H 1.09002 * 110.36306 * 143.20199 * 24 15 14 41 41 H 1.09000 * 110.36672 * 265.52155 * 24 15 14 42 42 H 1.07997 * 119.95366 * 179.70768 * 25 9 8 43 43 H 1.09001 * 109.47060 * 262.85618 * 27 26 25 44 44 H 1.09007 * 109.47372 * 22.85185 * 27 26 25 45 45 H 1.09001 * 109.47282 * 142.85856 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3499 1.5455 0.0005 5 8 4.0900 0.5819 0.0005 6 6 3.9136 2.9082 0.0011 7 6 3.0696 4.0160 -0.1222 8 6 3.5999 5.2863 -0.1217 9 6 4.9728 5.4685 0.0017 10 8 5.4915 6.7226 0.0023 11 6 4.5639 7.8083 -0.0517 12 1 3.7099 7.6224 0.5997 13 6 5.2564 9.1496 0.3070 14 6 4.3969 10.1942 -0.4360 15 7 3.6964 9.4910 -1.5205 16 6 2.8150 10.0591 -2.4012 17 1 2.3545 9.4554 -3.1694 18 6 2.5133 11.4107 -2.3068 19 7 3.0748 12.1464 -1.3710 20 14 1.3104 12.1854 -3.5078 21 1 1.1603 13.6295 -3.1959 22 1 1.8231 12.0282 -4.8926 23 1 -0.0090 11.5142 -3.3892 24 6 4.1048 8.0746 -1.5069 25 6 5.8158 4.3698 0.1194 26 6 5.2930 3.0959 0.1255 27 6 6.2075 1.9056 0.2594 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0031 3.8752 -0.2185 34 1 2.9488 6.1425 -0.2173 35 1 5.2312 9.3210 1.3832 36 1 6.2826 9.1641 -0.0605 37 1 5.0349 10.9744 -0.8512 38 1 3.6724 10.6316 0.2511 39 1 2.8637 13.0909 -1.3047 40 1 3.2606 7.4339 -1.7617 41 1 4.9294 7.9109 -2.2008 42 1 6.8821 4.5155 0.2103 43 1 6.4198 1.4975 -0.7287 44 1 7.1395 2.2148 0.7327 45 1 5.7247 1.1435 0.8712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233805596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:33 Heat of formation + Delta-G solvation = -87.795774 kcal Electronic energy + Delta-G solvation = -26380.747013 eV Core-core repulsion = 22556.875609 eV Total energy + Delta-G solvation = -3823.871404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.88916 -41.13132 -39.33371 -37.99231 -37.40292 -34.34400 -33.63684 -32.74663 -31.70621 -30.90445 -29.35187 -28.05339 -26.55912 -25.19974 -23.92397 -23.20661 -22.38838 -22.02848 -21.14104 -19.13821 -18.99599 -18.90222 -17.82949 -17.59684 -16.98903 -16.73638 -16.57724 -15.78819 -15.61465 -15.50109 -15.24294 -14.69814 -14.54162 -14.37737 -14.21346 -14.05932 -13.82997 -13.67178 -13.60032 -13.42405 -13.11353 -12.95565 -12.82633 -12.76107 -12.59714 -12.49934 -12.16474 -12.09642 -12.04802 -11.87283 -11.59551 -11.51574 -11.47261 -11.17361 -10.72653 -9.93377 -9.38833 -8.96852 -7.88160 -5.25403 -0.31723 0.24832 1.46639 1.47254 1.50047 1.56337 1.65254 1.97929 2.49271 2.64558 3.31000 3.53623 3.62829 3.65427 3.73709 3.79736 3.90112 3.99535 4.03297 4.05043 4.09278 4.26243 4.33589 4.36477 4.55547 4.64266 4.68936 4.79008 4.79808 4.82942 4.87164 4.93580 4.93739 4.95989 5.09901 5.12135 5.19575 5.26355 5.36598 5.41451 5.52511 5.58183 5.62969 5.70438 6.13603 6.31325 6.71558 7.05744 7.70594 8.33719 9.22032 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015730 B = 0.002778 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.575638 B =10075.786647 C =11509.995056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.361 6.361 4 C 0.516 3.484 5 O -0.525 6.525 6 C -0.193 4.193 7 C -0.010 4.010 8 C -0.234 4.234 9 C 0.167 3.833 10 O -0.301 6.301 11 C 0.082 3.918 12 H 0.094 0.906 13 C -0.121 4.121 14 C 0.185 3.815 15 N -0.623 5.623 16 C -0.248 4.248 17 H 0.083 0.917 18 C -0.061 4.061 19 N -0.950 5.950 20 Si 0.980 3.020 21 H -0.293 1.293 22 H -0.278 1.278 23 H -0.274 1.274 24 C 0.115 3.885 25 C -0.173 4.173 26 C 0.018 3.982 27 C -0.117 4.117 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.153 0.847 34 H 0.139 0.861 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.015 0.985 38 H 0.025 0.975 39 H 0.249 0.751 40 H 0.054 0.946 41 H 0.024 0.976 42 H 0.156 0.844 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 -22.847 5.907 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 O -0.278 6.278 4 C 0.364 3.636 5 O -0.417 6.417 6 C -0.195 4.195 7 C -0.028 4.028 8 C -0.253 4.253 9 C 0.120 3.880 10 O -0.213 6.213 11 C 0.025 3.975 12 H 0.112 0.888 13 C -0.159 4.159 14 C 0.060 3.940 15 N -0.350 5.350 16 C -0.377 4.377 17 H 0.101 0.899 18 C -0.254 4.254 19 N -0.598 5.598 20 Si 0.808 3.192 21 H -0.219 1.219 22 H -0.204 1.204 23 H -0.200 1.200 24 C -0.011 4.011 25 C -0.191 4.191 26 C 0.017 3.983 27 C -0.172 4.172 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.171 0.829 34 H 0.157 0.843 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.034 0.966 38 H 0.043 0.957 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.042 0.958 42 H 0.173 0.827 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.590 -22.892 5.879 23.642 hybrid contribution -0.772 0.885 -0.754 1.395 sum -0.181 -22.006 5.126 22.596 Atomic orbital electron populations 1.21837 0.90683 1.04386 1.03610 1.23296 0.96832 0.78854 1.02769 1.86561 1.23234 1.33992 1.83997 1.21059 0.80760 0.89600 0.72222 1.90765 1.60156 1.43229 1.47594 1.18939 0.93901 0.90234 1.16378 1.21328 1.00725 0.90178 0.90568 1.21471 0.94340 0.99164 1.10281 1.19625 0.92467 0.84942 0.90945 1.86062 1.36464 1.12246 1.86556 1.23593 0.91885 0.84789 0.97254 0.88783 1.22848 0.99823 0.91452 1.01753 1.20971 0.92588 0.91842 0.88595 1.44601 1.50430 1.04455 1.35551 1.19404 1.17145 0.92823 1.08304 0.89874 1.25656 1.02220 0.96820 1.00747 1.70138 1.47411 1.06277 1.35956 0.85135 0.78834 0.76920 0.78329 1.21940 1.20450 1.20027 1.22115 0.97710 0.86397 0.94870 1.20398 1.00923 0.88670 1.09129 1.19941 0.92240 0.95258 0.90823 1.21095 0.98073 0.94456 1.03616 0.91521 0.88035 0.91386 0.91135 0.90952 0.82891 0.84301 0.88480 0.90226 0.96625 0.95693 0.94133 0.92805 0.95813 0.82671 0.90172 0.89762 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.29 71.98 0.74 -0.81 16 2 C 0.06 0.87 6.20 71.98 0.45 1.32 16 3 O -0.36 -7.72 9.48 -56.59 -0.54 -8.26 16 4 C 0.52 12.58 7.82 70.25 0.55 13.12 16 5 O -0.53 -13.96 13.13 19.83 0.26 -13.70 16 6 C -0.19 -4.72 5.87 -20.09 -0.12 -4.83 16 7 C -0.01 -0.23 9.61 22.51 0.22 -0.02 16 8 C -0.23 -6.16 8.59 22.32 0.19 -5.97 16 9 C 0.17 4.60 6.61 22.64 0.15 4.75 16 10 O -0.30 -9.26 9.96 -90.25 -0.90 -10.16 16 11 C 0.08 2.75 2.84 31.98 0.09 2.84 16 12 H 0.09 2.99 6.74 -2.39 -0.02 2.97 16 13 C -0.12 -4.29 6.68 31.79 0.21 -4.08 16 14 C 0.18 8.86 5.37 86.73 0.47 9.33 16 15 N -0.62 -31.45 3.39 -691.97 -2.35 -33.80 16 16 C -0.25 -13.69 10.28 84.03 0.86 -12.83 16 17 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 18 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 19 N -0.95 -55.86 10.31 21.65 0.22 -55.64 16 20 Si 0.98 44.87 29.55 68.60 2.03 46.89 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 C 0.11 4.65 6.48 86.85 0.56 5.21 16 25 C -0.17 -4.12 9.59 22.32 0.21 -3.91 16 26 C 0.02 0.42 5.91 -19.62 -0.12 0.30 16 27 C -0.12 -2.27 8.69 71.24 0.62 -1.65 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.15 3.09 7.62 -2.91 -0.02 3.07 16 34 H 0.14 3.77 5.18 -2.91 -0.02 3.75 16 35 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 37 H 0.02 0.84 7.52 -2.39 -0.02 0.82 16 38 H 0.02 1.31 7.37 -2.38 -0.02 1.30 16 39 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 40 H 0.05 2.07 7.02 -2.39 -0.02 2.05 16 41 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.16 3.11 8.05 -2.91 -0.02 3.09 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.08 1.27 8.03 -2.38 -0.02 1.25 16 45 H 0.08 1.81 5.91 -2.39 -0.01 1.80 16 Total: -1.00 -65.68 366.32 5.27 -60.40 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.99 Total: 14.42 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 5.56 Total: -0.16 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -2.13 Total: -89.44 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -1.17 Total: -32.12 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -65.68 5.27 -60.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233805596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.391 kcal (2) G-P(sol) polarization free energy of solvation -65.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds