Wall clock time and date at job start Tue Mar 31 2020 13:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47309 * 2 1 4 4 C 1.34231 * 117.00408 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99509 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00277 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.46883 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.47489 * 305.00501 * 7 6 4 9 9 C 1.52998 * 109.46905 * 185.00127 * 7 6 4 10 10 N 1.46502 * 109.47168 * 65.00796 * 7 6 4 11 11 C 1.34781 * 120.00026 * 204.99920 * 10 7 6 12 12 O 1.21280 * 119.99655 * 359.97438 * 11 10 7 13 13 C 1.50702 * 119.99926 * 179.97438 * 11 10 7 14 14 H 1.09001 * 109.46981 * 59.99618 * 13 11 10 15 15 C 1.50700 * 109.46965 * 299.99527 * 13 11 10 16 16 H 1.08000 * 120.00183 * 325.10349 * 15 13 11 17 17 C 1.37875 * 119.99601 * 145.09471 * 15 13 11 18 18 N 1.31521 * 120.00250 * 184.98553 * 17 15 13 19 19 Si 1.86802 * 120.00351 * 4.99082 * 17 15 13 20 20 H 1.48493 * 109.47241 * 84.66143 * 19 17 15 21 21 H 1.48498 * 109.47209 * 204.66835 * 19 17 15 22 22 H 1.48508 * 109.46617 * 324.66641 * 19 17 15 23 23 C 1.50693 * 109.46895 * 179.97438 * 13 11 10 24 24 C 1.38239 * 120.00270 * 65.02196 * 23 13 11 25 25 C 1.38236 * 119.99863 * 179.79028 * 24 23 13 26 26 C 1.38226 * 120.00223 * 0.43487 * 25 24 23 27 27 C 1.38236 * 119.99977 * 359.81985 * 26 25 24 28 28 C 1.38234 * 120.00035 * 359.97160 * 27 26 25 29 29 H 1.09004 * 109.47261 * 300.00396 * 1 2 3 30 30 H 1.09001 * 109.46791 * 60.00021 * 1 2 3 31 31 H 1.08995 * 109.47369 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47250 * 240.00054 * 2 1 3 33 33 H 1.09001 * 109.46791 * 119.99978 * 2 1 3 34 34 H 1.08995 * 109.47450 * 300.00404 * 6 4 3 35 35 H 1.08998 * 109.47157 * 60.00324 * 6 4 3 36 36 H 1.09002 * 109.47147 * 300.00232 * 9 7 6 37 37 H 1.08998 * 109.47468 * 60.00149 * 9 7 6 38 38 H 1.09002 * 109.47168 * 180.02562 * 9 7 6 39 39 H 0.97001 * 120.00077 * 24.98795 * 10 7 6 40 40 H 0.96995 * 120.00225 * 180.02562 * 18 17 15 41 41 H 1.08000 * 119.99660 * 359.97438 * 24 23 13 42 42 H 1.08008 * 119.99487 * 180.27550 * 25 24 23 43 43 H 1.07998 * 120.00135 * 179.83753 * 26 25 24 44 44 H 1.08008 * 119.99923 * 180.02562 * 27 26 25 45 45 H 1.07997 * 119.99771 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.4486 2.8572 0.0001 8 1 5.7806 2.2499 0.8421 9 6 6.0331 4.2656 0.1253 10 7 5.9058 2.2484 -1.2515 11 6 7.0965 1.6186 -1.2990 12 8 7.7896 1.5563 -0.3057 13 6 7.5665 0.9917 -2.5864 14 1 7.6433 1.7587 -3.3571 15 6 6.5802 -0.0611 -3.0218 16 1 6.0659 -0.6579 -2.2830 17 6 6.3341 -0.2623 -4.3635 18 7 5.4033 -1.1112 -4.7413 19 14 7.3229 0.6705 -5.6447 20 1 8.5949 -0.0489 -5.9085 21 1 6.5385 0.7666 -6.9019 22 1 7.6215 2.0357 -5.1419 23 6 8.9169 0.3580 -2.3727 24 6 9.0478 -0.7169 -1.5133 25 6 10.2858 -1.3010 -1.3207 26 6 11.3944 -0.8046 -1.9805 27 6 11.2644 0.2736 -2.8358 28 6 10.0257 0.8549 -3.0318 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5852 3.4691 -0.8904 35 1 3.5844 3.4700 0.8895 36 1 5.7012 4.8730 -0.7167 37 1 5.6930 4.7188 1.0565 38 1 7.1217 4.2086 0.1250 39 1 5.3516 2.2983 -2.0460 40 1 5.2304 -1.2530 -5.6851 41 1 8.1823 -1.1021 -0.9947 42 1 10.3873 -2.1436 -0.6526 43 1 12.3621 -1.2593 -1.8279 44 1 12.1306 0.6611 -3.3517 45 1 9.9241 1.6970 -3.7003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362655851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:00 Heat of formation + Delta-G solvation = -110.169684 kcal Electronic energy + Delta-G solvation = -27484.183383 eV Core-core repulsion = 23659.341774 eV Total energy + Delta-G solvation = -3824.841609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.32070 -39.24134 -37.97855 -36.54816 -35.13406 -33.56544 -31.81791 -31.47309 -30.82602 -30.06696 -28.24563 -27.53182 -23.80980 -23.33212 -22.03864 -21.76281 -20.97354 -20.07564 -19.29304 -17.44736 -17.05507 -16.61454 -16.46376 -16.02207 -15.86960 -15.47921 -14.55980 -14.40719 -14.08016 -13.84260 -13.65852 -13.36224 -13.04336 -12.86281 -12.79676 -12.63934 -12.50792 -12.34094 -12.20537 -12.00605 -11.73786 -11.69985 -11.63793 -11.50842 -11.08824 -10.95353 -10.85610 -10.40410 -10.35637 -10.15602 -10.12001 -9.86494 -9.43627 -8.89675 -8.59997 -8.35172 -8.07051 -7.74097 -6.23023 -4.25510 2.21619 2.28300 2.52528 2.81623 3.17630 3.25634 3.30630 3.69495 3.98432 4.27021 4.69555 4.70333 4.82697 4.98361 5.05657 5.07332 5.21265 5.34938 5.38983 5.51944 5.60267 5.61383 5.65711 5.71309 5.77896 5.81099 5.83586 5.94418 6.02186 6.05405 6.28075 6.34671 6.38396 6.42209 6.53623 6.69009 6.81204 6.92466 7.21176 7.23139 7.32505 7.36779 7.67024 7.86789 8.05387 8.28800 8.38778 8.83403 9.23931 9.35114 10.88170 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.004558 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.173236 B = 6141.145629 C = 7000.289142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.367 6.367 4 C 0.448 3.552 5 O -0.472 6.472 6 C -0.119 4.119 7 C 0.153 3.847 8 H 0.092 0.908 9 C -0.161 4.161 10 N -0.718 5.718 11 C 0.544 3.456 12 O -0.562 6.562 13 C 0.018 3.982 14 H 0.071 0.929 15 C -0.502 4.502 16 H 0.085 0.915 17 C 0.083 3.917 18 N -0.885 5.885 19 Si 0.864 3.136 20 H -0.267 1.267 21 H -0.287 1.287 22 H -0.262 1.262 23 C -0.025 4.025 24 C -0.071 4.071 25 C -0.130 4.130 26 C -0.144 4.144 27 C -0.129 4.129 28 C -0.138 4.138 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.402 0.598 40 H 0.267 0.733 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.619 8.196 7.032 11.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.285 6.285 4 C 0.289 3.711 5 O -0.356 6.356 6 C -0.157 4.157 7 C 0.047 3.953 8 H 0.110 0.890 9 C -0.219 4.219 10 N -0.370 5.370 11 C 0.333 3.667 12 O -0.441 6.441 13 C -0.004 4.004 14 H 0.088 0.912 15 C -0.540 4.540 16 H 0.103 0.897 17 C -0.121 4.121 18 N -0.521 5.521 19 Si 0.692 3.308 20 H -0.192 1.192 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.026 4.026 24 C -0.089 4.089 25 C -0.148 4.148 26 C -0.162 4.162 27 C -0.148 4.148 28 C -0.156 4.156 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.236 0.764 40 H 0.077 0.923 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.027 7.713 7.576 11.537 hybrid contribution 0.129 0.128 -1.301 1.314 sum -3.898 7.841 6.274 10.772 Atomic orbital electron populations 1.21785 0.93001 1.02793 1.03109 1.22987 0.94911 0.80365 1.03014 1.86439 1.24980 1.32382 1.84733 1.23597 0.80604 0.92956 0.73935 1.90825 1.59861 1.42543 1.42370 1.21749 0.96100 0.91737 1.06160 1.20605 0.89697 0.94630 0.90348 0.88971 1.22177 1.02494 0.95713 1.01521 1.45797 1.21429 1.57719 1.12037 1.20972 0.79803 0.75064 0.90871 1.90574 1.55924 1.59915 1.37639 1.18586 0.91874 0.97182 0.92738 0.91163 1.20583 1.21552 1.18567 0.93282 0.89707 1.24987 0.94201 0.94842 0.98078 1.69877 1.30475 1.35123 1.16614 0.87048 0.81298 0.81127 0.81364 1.19232 1.21266 1.18767 1.20080 0.94343 0.94754 0.93464 1.20865 0.96568 0.94813 0.96694 1.21031 0.93266 1.00075 1.00400 1.20844 0.97935 0.98126 0.99320 1.20869 0.96812 0.97413 0.99659 1.20964 0.92780 1.00450 1.01435 0.91870 0.91540 0.90408 0.90626 0.91536 0.87399 0.86912 0.92384 0.91982 0.91420 0.76381 0.92323 0.86481 0.87186 0.87391 0.87336 0.87497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.29 37.16 0.38 -1.05 16 2 C 0.06 0.80 6.19 37.16 0.23 1.03 16 3 O -0.37 -5.21 10.22 -39.26 -0.40 -5.62 16 4 C 0.45 7.02 7.82 36.00 0.28 7.30 16 5 O -0.47 -9.59 15.10 -18.75 -0.28 -9.87 16 6 C -0.12 -1.40 5.35 -27.89 -0.15 -1.55 16 7 C 0.15 2.27 2.14 -67.93 -0.15 2.13 16 8 H 0.09 1.62 7.39 -51.93 -0.38 1.23 16 9 C -0.16 -1.95 9.48 37.16 0.35 -1.59 16 10 N -0.72 -13.29 4.12 -53.81 -0.22 -13.51 16 11 C 0.54 12.13 7.00 -10.98 -0.08 12.05 16 12 O -0.56 -13.61 15.03 5.56 0.08 -13.53 16 13 C 0.02 0.42 1.89 -94.08 -0.18 0.24 16 14 H 0.07 1.61 4.89 -51.93 -0.25 1.35 16 15 C -0.50 -13.37 8.07 -34.44 -0.28 -13.65 16 16 H 0.08 2.57 8.06 -52.49 -0.42 2.14 16 17 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 18 N -0.88 -25.53 13.96 55.43 0.77 -24.76 16 19 Si 0.86 20.33 27.18 -169.99 -4.62 15.71 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.26 -5.72 6.06 56.52 0.34 -5.37 16 23 C -0.03 -0.59 4.09 -104.63 -0.43 -1.02 16 24 C -0.07 -1.63 8.25 -39.58 -0.33 -1.96 16 25 C -0.13 -2.57 10.05 -39.59 -0.40 -2.96 16 26 C -0.14 -2.63 10.05 -39.59 -0.40 -3.03 16 27 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 28 C -0.14 -2.91 9.46 -39.58 -0.37 -3.28 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16 33 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.40 7.21 8.49 -40.82 -0.35 6.87 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.12 2.84 7.93 -52.49 -0.42 2.42 16 42 H 0.11 1.88 8.06 -52.48 -0.42 1.45 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 45 H 0.11 2.08 7.95 -52.49 -0.42 1.67 16 LS Contribution 380.12 15.07 5.73 5.73 Total: -1.00 -33.41 380.12 -7.87 -41.28 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -6.93 Total: 12.57 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -2.00 Total: -8.00 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.55 Total: -38.27 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.60 Total: -29.02 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.62 Total: 15.71 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.41 -7.87 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362655851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.886 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds