Wall clock time and date at job start Tue Mar 31 2020 13:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45199 * 109.47358 * 2 1 4 4 C 1.34229 * 116.99997 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00184 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99803 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.47017 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.46688 * 55.00000 * 7 6 4 9 9 C 1.52994 * 109.47065 * 175.00494 * 7 6 4 10 10 N 1.46501 * 109.46952 * 295.00308 * 7 6 4 11 11 C 1.34779 * 119.99872 * 154.72194 * 10 7 6 12 12 O 1.21281 * 119.99637 * 0.27976 * 11 10 7 13 13 C 1.50699 * 120.00245 * 180.27265 * 11 10 7 14 14 H 1.09008 * 109.46934 * 321.99678 * 13 11 10 15 15 C 1.50702 * 109.46875 * 81.98977 * 13 11 10 16 16 H 1.08003 * 119.99473 * 54.36701 * 15 13 11 17 17 C 1.37868 * 120.00121 * 234.36058 * 15 13 11 18 18 N 1.31521 * 119.99703 * 172.37431 * 17 15 13 19 19 Si 1.86801 * 120.00512 * 352.37101 * 17 15 13 20 20 H 1.48504 * 109.46876 * 83.66152 * 19 17 15 21 21 H 1.48493 * 109.47507 * 203.66216 * 19 17 15 22 22 H 1.48507 * 109.47016 * 323.66420 * 19 17 15 23 23 C 1.50698 * 109.47360 * 201.99734 * 13 11 10 24 24 C 1.38238 * 119.99341 * 292.57396 * 23 13 11 25 25 C 1.38234 * 119.99420 * 179.79016 * 24 23 13 26 26 C 1.38240 * 120.00169 * 0.44240 * 25 24 23 27 27 C 1.38233 * 119.99928 * 359.80905 * 26 25 24 28 28 C 1.38231 * 120.00323 * 112.85073 * 23 13 11 29 29 H 1.08997 * 109.46902 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46979 * 300.00622 * 1 2 3 31 31 H 1.09002 * 109.46863 * 60.00036 * 1 2 3 32 32 H 1.08998 * 109.46979 * 239.99377 * 2 1 3 33 33 H 1.09002 * 109.46863 * 119.99964 * 2 1 3 34 34 H 1.09005 * 109.46606 * 60.00139 * 6 4 3 35 35 H 1.08998 * 109.47337 * 299.99973 * 6 4 3 36 36 H 1.09000 * 109.46952 * 180.02562 * 9 7 6 37 37 H 1.09005 * 109.46990 * 300.00050 * 9 7 6 38 38 H 1.08998 * 109.47352 * 60.00020 * 9 7 6 39 39 H 0.97001 * 120.00563 * 334.99762 * 10 7 6 40 40 H 0.97003 * 119.99646 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.00565 * 359.97438 * 24 23 13 42 42 H 1.08007 * 120.00080 * 180.27566 * 25 24 23 43 43 H 1.08003 * 120.00021 * 179.83653 * 26 25 24 44 44 H 1.08001 * 120.00276 * 180.02562 * 27 26 25 45 45 H 1.08002 * 119.99837 * 359.97035 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9374 -0.0012 7 6 5.4488 2.8572 -0.0010 8 1 5.7807 2.2492 -0.8426 9 6 6.0333 4.2655 -0.1273 10 7 5.9058 2.2493 1.2511 11 6 7.0939 1.6146 1.2977 12 8 7.7869 1.5513 0.3044 13 6 7.5613 0.9839 2.5841 14 1 7.2777 1.6184 3.4239 15 6 6.9215 -0.3716 2.7403 16 1 7.0154 -1.1068 1.9546 17 6 6.2166 -0.6733 3.8861 18 7 5.5338 -1.7948 3.9619 19 14 6.2314 0.5106 5.3309 20 1 5.2088 1.5660 5.1164 21 1 5.9239 -0.2297 6.5808 22 1 7.5731 1.1370 5.4439 23 6 9.0602 0.8315 2.5533 24 6 9.6468 -0.0538 1.6683 25 6 11.0220 -0.1904 1.6371 26 6 11.8101 0.5516 2.4970 27 6 11.2231 1.4330 3.3855 28 6 9.8482 1.5727 3.4138 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.5852 3.4697 0.8889 35 1 3.5846 3.4693 -0.8911 36 1 7.1218 4.2084 -0.1276 37 1 5.6932 4.7179 -1.0589 38 1 5.7013 4.8735 0.7143 39 1 5.3515 2.2999 2.0455 40 1 5.0381 -2.0072 4.7682 41 1 9.0309 -0.6365 0.9993 42 1 11.4807 -0.8787 0.9426 43 1 12.8844 0.4429 2.4744 44 1 11.8388 2.0129 4.0571 45 1 9.3896 2.2614 4.1080 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362655853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:05 Heat of formation + Delta-G solvation = -110.543262 kcal Electronic energy + Delta-G solvation = -27473.169078 eV Core-core repulsion = 23648.311269 eV Total energy + Delta-G solvation = -3824.857809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.31810 -39.23648 -37.99378 -36.54550 -35.14062 -33.52863 -31.82640 -31.51464 -30.84923 -30.08732 -28.25260 -27.58099 -23.84204 -23.33373 -22.01953 -21.78743 -20.96923 -20.09176 -19.33949 -17.43693 -17.05594 -16.62548 -16.45631 -16.05493 -15.86699 -15.49095 -14.63902 -14.33986 -14.07450 -13.86611 -13.66079 -13.38426 -12.99968 -12.85729 -12.83083 -12.69888 -12.56332 -12.36536 -12.16778 -12.00525 -11.72213 -11.67895 -11.64070 -11.50831 -11.09170 -11.03555 -10.86091 -10.44347 -10.35353 -10.10691 -10.08523 -9.98050 -9.44716 -8.95445 -8.59653 -8.38166 -8.09145 -7.77023 -6.23698 -4.23576 2.18311 2.25587 2.52823 2.81149 3.10638 3.24304 3.25807 3.71753 3.95596 4.24056 4.67208 4.68895 4.81987 4.98249 5.05371 5.11358 5.18893 5.34871 5.38581 5.51430 5.57731 5.59764 5.62894 5.70663 5.76316 5.80334 5.83046 5.93615 6.00108 6.07139 6.22534 6.29048 6.35081 6.44960 6.45857 6.69232 6.78255 6.90874 7.18416 7.20505 7.30801 7.36072 7.65412 7.84017 8.06062 8.23558 8.40046 8.83320 9.24094 9.33875 10.88086 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012601 B = 0.004633 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.455342 B = 6041.928685 C = 7145.494057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.368 6.368 4 C 0.444 3.556 5 O -0.466 6.466 6 C -0.120 4.120 7 C 0.153 3.847 8 H 0.094 0.906 9 C -0.160 4.160 10 N -0.725 5.725 11 C 0.540 3.460 12 O -0.559 6.559 13 C 0.033 3.967 14 H 0.056 0.944 15 C -0.496 4.496 16 H 0.083 0.917 17 C 0.081 3.919 18 N -0.880 5.880 19 Si 0.864 3.136 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.260 1.260 23 C -0.030 4.030 24 C -0.068 4.068 25 C -0.132 4.132 26 C -0.143 4.143 27 C -0.132 4.132 28 C -0.134 4.134 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.395 0.605 40 H 0.267 0.733 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.105 10.377 -5.001 12.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.286 6.286 4 C 0.284 3.716 5 O -0.349 6.349 6 C -0.158 4.158 7 C 0.047 3.953 8 H 0.112 0.888 9 C -0.218 4.218 10 N -0.376 5.376 11 C 0.330 3.670 12 O -0.437 6.437 13 C 0.011 3.989 14 H 0.074 0.926 15 C -0.533 4.533 16 H 0.101 0.899 17 C -0.123 4.123 18 N -0.516 5.516 19 Si 0.691 3.309 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.184 1.184 23 C -0.031 4.031 24 C -0.086 4.086 25 C -0.150 4.150 26 C -0.161 4.161 27 C -0.150 4.150 28 C -0.152 4.152 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.228 0.772 40 H 0.077 0.923 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.523 9.851 -5.600 12.201 hybrid contribution -0.501 0.253 1.353 1.464 sum -5.024 10.105 -4.248 12.058 Atomic orbital electron populations 1.21785 0.93009 1.02801 1.03061 1.22993 0.94866 0.80345 1.03117 1.86434 1.24999 1.32398 1.84818 1.23631 0.80668 0.93014 0.74284 1.90874 1.59739 1.42396 1.41912 1.21763 0.96172 0.91749 1.06106 1.20613 0.89623 0.94672 0.90360 0.88818 1.22168 1.02551 0.95638 1.01474 1.45897 1.21773 1.58093 1.11859 1.21317 0.79674 0.74364 0.91677 1.90553 1.55849 1.59618 1.37641 1.18337 0.90112 0.98457 0.91952 0.92561 1.20515 1.31931 0.95899 1.04968 0.89855 1.25036 0.94008 0.95331 0.97954 1.69891 1.29567 1.23987 1.28180 0.87040 0.79321 0.81550 0.83012 1.19918 1.21007 1.18428 1.20008 0.95619 0.93714 0.93787 1.20941 0.93699 0.96667 0.97314 1.21058 0.94231 1.00136 0.99560 1.20869 0.98704 0.98640 0.97870 1.20870 0.94662 0.99808 0.99651 1.20995 0.93636 1.00463 1.00149 0.90383 0.91630 0.91845 0.91426 0.90674 0.87574 0.86862 0.91352 0.91962 0.92466 0.77220 0.92312 0.86111 0.87135 0.87384 0.87316 0.87313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.06 16 2 C 0.06 0.82 6.19 37.16 0.23 1.05 16 3 O -0.37 -5.30 10.22 -39.25 -0.40 -5.70 16 4 C 0.44 7.09 7.82 36.01 0.28 7.37 16 5 O -0.47 -9.77 15.10 -18.75 -0.28 -10.05 16 6 C -0.12 -1.42 5.35 -27.88 -0.15 -1.57 16 7 C 0.15 2.31 2.14 -67.93 -0.15 2.16 16 8 H 0.09 1.68 7.39 -51.93 -0.38 1.29 16 9 C -0.16 -1.95 9.49 37.15 0.35 -1.60 16 10 N -0.72 -13.55 4.22 -53.80 -0.23 -13.77 16 11 C 0.54 12.20 6.90 -10.98 -0.08 12.13 16 12 O -0.56 -13.73 14.86 5.56 0.08 -13.64 16 13 C 0.03 0.78 2.20 -94.08 -0.21 0.58 16 14 H 0.06 1.26 4.73 -51.92 -0.25 1.02 16 15 C -0.50 -13.56 8.23 -34.44 -0.28 -13.85 16 16 H 0.08 2.59 7.72 -52.48 -0.40 2.18 16 17 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 18 N -0.88 -25.80 13.96 55.43 0.77 -25.02 16 19 Si 0.86 19.99 26.84 -169.99 -4.56 15.43 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.26 -5.80 6.96 56.52 0.39 -5.41 16 23 C -0.03 -0.69 4.53 -104.63 -0.47 -1.17 16 24 C -0.07 -1.54 8.04 -39.58 -0.32 -1.86 16 25 C -0.13 -2.54 10.05 -39.58 -0.40 -2.94 16 26 C -0.14 -2.51 10.05 -39.58 -0.40 -2.91 16 27 C -0.13 -2.37 10.05 -39.59 -0.40 -2.77 16 28 C -0.13 -2.74 9.67 -39.59 -0.38 -3.12 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 33 H 0.07 1.16 8.13 -51.93 -0.42 0.73 16 34 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.39 7.00 8.60 -40.82 -0.35 6.65 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.12 2.91 7.46 -52.49 -0.39 2.52 16 42 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 43 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 44 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.11 2.04 7.96 -52.49 -0.42 1.62 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -33.98 380.59 -7.79 -41.78 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -6.83 Total: 12.68 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -2.08 Total: -7.44 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.55 Total: -38.79 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.60 Total: -29.40 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.56 Total: 15.43 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.98 -7.79 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362655853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.764 kcal (2) G-P(sol) polarization free energy of solvation -33.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds