Wall clock time and date at job start Tue Mar 31 2020 13:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47072 * 2 1 4 4 C 1.34231 * 117.00460 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99592 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00188 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.46887 * 180.02562 * 6 4 3 8 8 N 1.46497 * 109.47130 * 180.02562 * 7 6 4 9 9 C 1.46495 * 120.00482 * 89.99759 * 8 7 6 10 10 C 1.34776 * 119.99692 * 269.72338 * 8 7 6 11 11 O 1.21284 * 120.00035 * 5.55144 * 10 8 7 12 12 C 1.50703 * 119.99917 * 185.54654 * 10 8 7 13 13 H 1.09003 * 109.47015 * 49.36013 * 12 10 8 14 14 C 1.50698 * 109.47332 * 289.36064 * 12 10 8 15 15 H 1.08003 * 119.99824 * 335.29671 * 14 12 10 16 16 C 1.37877 * 120.00148 * 155.29595 * 14 12 10 17 17 N 1.31515 * 119.99898 * 187.78615 * 16 14 12 18 18 Si 1.86802 * 119.99896 * 7.79336 * 16 14 12 19 19 H 1.48493 * 109.47223 * 86.81873 * 18 16 14 20 20 H 1.48498 * 109.46796 * 206.81734 * 18 16 14 21 21 H 1.48506 * 109.46837 * 326.81610 * 18 16 14 22 22 C 1.50704 * 109.47066 * 169.35719 * 12 10 8 23 23 C 1.38237 * 119.99583 * 66.33006 * 22 12 10 24 24 C 1.38239 * 119.99573 * 179.78994 * 23 22 12 25 25 C 1.38237 * 120.00082 * 0.43477 * 24 23 22 26 26 C 1.38234 * 119.99767 * 359.81903 * 25 24 23 27 27 C 1.38233 * 119.99866 * 246.59975 * 22 12 10 28 28 H 1.08996 * 109.47371 * 59.99913 * 1 2 3 29 29 H 1.09002 * 109.46800 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46632 * 299.99555 * 1 2 3 31 31 H 1.09003 * 109.46835 * 240.00958 * 2 1 3 32 32 H 1.08996 * 109.47371 * 120.00086 * 2 1 3 33 33 H 1.09004 * 109.47259 * 60.00331 * 6 4 3 34 34 H 1.08998 * 109.47121 * 299.99993 * 6 4 3 35 35 H 1.08996 * 109.47200 * 59.99925 * 7 6 4 36 36 H 1.09004 * 109.46878 * 300.00229 * 7 6 4 37 37 H 1.09005 * 109.47217 * 88.42103 * 9 8 7 38 38 H 1.08992 * 109.47615 * 208.42588 * 9 8 7 39 39 H 1.09008 * 109.47172 * 328.42700 * 9 8 7 40 40 H 0.96995 * 119.99615 * 179.97438 * 17 16 14 41 41 H 1.07994 * 120.00163 * 359.97438 * 23 22 12 42 42 H 1.07993 * 119.99861 * 180.27574 * 24 23 22 43 43 H 1.07991 * 119.99990 * 179.83721 * 25 24 23 44 44 H 1.08006 * 119.99796 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.00396 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9206 2.9375 0.0000 7 6 5.4486 2.8575 -0.0014 8 7 6.0085 4.2112 -0.0003 9 6 6.2895 4.8867 1.2689 10 6 6.2702 4.8331 -1.1670 11 8 5.9499 4.3148 -2.2156 12 6 6.9608 6.1726 -1.1684 13 1 7.8467 6.1254 -0.5351 14 6 6.0198 7.2236 -0.6383 15 1 4.9520 7.0751 -0.7044 16 6 6.5219 8.3745 -0.0689 17 7 5.7114 9.2195 0.5301 18 14 8.3533 8.7338 -0.1485 19 1 8.6643 9.4413 -1.4165 20 1 8.7405 9.5880 1.0028 21 1 9.1108 7.4576 -0.0950 22 6 7.3677 6.5265 -2.5757 23 6 6.4015 6.7728 -3.5332 24 6 6.7748 7.1017 -4.8230 25 6 8.1140 7.1753 -5.1575 26 6 9.0801 6.9238 -4.2012 27 6 8.7069 6.5992 -2.9103 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.5851 3.4691 0.8905 34 1 3.5842 3.4702 -0.8895 35 1 5.7837 2.3260 -0.8921 36 1 5.7853 2.3246 0.8879 37 1 7.2992 4.6389 1.5966 38 1 6.2060 5.9649 1.1331 39 1 5.5725 4.5587 2.0217 40 1 6.0647 10.0290 0.9309 41 1 5.3552 6.7113 -3.2729 42 1 6.0200 7.2985 -5.5699 43 1 8.4056 7.4296 -6.1657 44 1 10.1264 6.9809 -4.4627 45 1 9.4616 6.4029 -2.1633 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363350148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:31 Heat of formation + Delta-G solvation = -100.330335 kcal Electronic energy + Delta-G solvation = -26997.537418 eV Core-core repulsion = 23173.122475 eV Total energy + Delta-G solvation = -3824.414943 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52142 -39.53194 -38.06753 -36.76946 -35.10735 -33.83374 -32.16128 -31.61407 -30.97786 -30.13120 -27.83194 -26.28915 -24.92218 -23.44101 -22.80914 -21.84654 -21.07943 -20.42005 -18.46174 -17.66492 -17.17873 -16.86409 -16.45684 -16.15094 -16.04177 -15.18496 -14.76309 -14.63414 -14.37537 -14.14330 -13.76611 -13.29293 -13.20632 -13.03817 -12.79756 -12.72936 -12.54344 -12.30861 -12.10430 -12.08257 -12.00038 -11.86508 -11.70032 -11.48509 -11.15217 -10.96340 -10.88624 -10.64999 -10.50102 -10.48216 -10.24121 -9.91620 -9.60836 -8.96898 -8.70114 -8.15380 -8.12246 -7.81489 -6.35426 -4.37542 2.13860 2.21215 2.22168 2.57347 3.16208 3.23831 3.30060 3.51175 3.70148 4.20628 4.61213 4.70812 4.72281 4.81604 4.95678 5.04832 5.07839 5.09639 5.47852 5.53921 5.55492 5.58035 5.61024 5.68398 5.75050 5.77012 5.81309 5.95622 5.98563 6.07296 6.18689 6.28857 6.32952 6.40882 6.48305 6.66260 6.73952 6.86346 7.14011 7.17118 7.25400 7.26174 7.59653 7.74293 7.79233 7.99813 8.19644 8.64443 8.98989 9.22226 10.74417 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014557 B = 0.003582 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.057221 B = 7814.254621 C = 8750.303001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.471 3.529 5 O -0.513 6.513 6 C -0.131 4.131 7 C 0.132 3.868 8 N -0.615 5.615 9 C 0.063 3.937 10 C 0.540 3.460 11 O -0.555 6.555 12 C 0.024 3.976 13 H 0.069 0.931 14 C -0.509 4.509 15 H 0.083 0.917 16 C 0.089 3.911 17 N -0.879 5.879 18 Si 0.863 3.137 19 H -0.267 1.267 20 H -0.287 1.287 21 H -0.259 1.259 22 C -0.037 4.037 23 C -0.066 4.066 24 C -0.132 4.132 25 C -0.141 4.141 26 C -0.131 4.131 27 C -0.139 4.139 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.121 0.879 39 H 0.056 0.944 40 H 0.270 0.730 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.029 -11.057 0.463 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.314 3.686 5 O -0.401 6.401 6 C -0.170 4.170 7 C 0.008 3.992 8 N -0.348 5.348 9 C -0.080 4.080 10 C 0.330 3.670 11 O -0.432 6.432 12 C 0.002 3.998 13 H 0.087 0.913 14 C -0.546 4.546 15 H 0.101 0.899 16 C -0.117 4.117 17 N -0.514 5.514 18 Si 0.689 3.311 19 H -0.192 1.192 20 H -0.213 1.213 21 H -0.184 1.184 22 C -0.038 4.038 23 C -0.084 4.084 24 C -0.150 4.150 25 C -0.160 4.160 26 C -0.149 4.149 27 C -0.157 4.157 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.139 0.861 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.138 0.862 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.019 -11.446 0.031 11.838 hybrid contribution 0.912 0.251 0.105 0.952 sum -2.107 -11.195 0.136 11.393 Atomic orbital electron populations 1.21807 0.92701 1.02818 1.03650 1.23003 0.95348 0.80492 1.02499 1.86541 1.24885 1.32158 1.84062 1.23800 0.80331 0.92801 0.71683 1.90650 1.60357 1.43379 1.45739 1.21882 0.97896 0.90508 1.06709 1.21046 0.89604 0.84697 1.03878 1.47733 1.64245 1.15394 1.07476 1.22227 0.99068 1.02695 0.84001 1.21081 0.77375 0.86383 0.82125 1.90598 1.53819 1.67333 1.31487 1.18567 0.98017 0.91511 0.91687 0.91314 1.20416 0.93794 1.01266 1.39167 0.89885 1.24905 0.97683 0.95554 0.93551 1.69868 1.35428 1.11704 1.34415 0.87080 0.86095 0.79334 0.78559 1.19174 1.21279 1.18424 1.20148 0.92250 0.95402 0.95975 1.20877 0.99818 0.95839 0.91853 1.21061 0.95659 1.01505 0.96743 1.20877 0.93382 1.03101 0.98591 1.20886 0.98484 1.01861 0.93673 1.21036 0.95883 1.02524 0.96244 0.91388 0.90367 0.91447 0.91283 0.91330 0.87400 0.86906 0.89544 0.90301 0.93973 0.86063 0.92492 0.92026 0.86214 0.87085 0.87326 0.87277 0.87265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 37.16 0.38 -0.75 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.36 -4.69 10.22 -39.26 -0.40 -5.09 16 4 C 0.47 6.75 7.96 36.00 0.29 7.03 16 5 O -0.51 -8.36 15.73 -18.75 -0.29 -8.65 16 6 C -0.13 -1.86 6.14 -27.88 -0.17 -2.03 16 7 C 0.13 2.06 4.67 -4.04 -0.02 2.04 16 8 N -0.62 -10.98 2.87 -181.57 -0.52 -11.50 16 9 C 0.06 1.01 10.01 59.84 0.60 1.61 16 10 C 0.54 11.45 6.88 -10.98 -0.08 11.37 16 11 O -0.55 -12.86 14.89 5.55 0.08 -12.78 16 12 C 0.02 0.52 1.13 -94.07 -0.11 0.42 16 13 H 0.07 1.49 5.31 -51.93 -0.28 1.21 16 14 C -0.51 -12.47 5.88 -34.44 -0.20 -12.67 16 15 H 0.08 2.25 8.05 -52.48 -0.42 1.82 16 16 C 0.09 2.25 5.41 -17.82 -0.10 2.15 16 17 N -0.88 -23.81 13.96 55.43 0.77 -23.04 16 18 Si 0.86 19.59 25.76 -169.99 -4.38 15.21 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.26 -5.47 5.90 56.52 0.33 -5.14 16 22 C -0.04 -0.81 3.59 -104.62 -0.38 -1.19 16 23 C -0.07 -1.43 8.10 -39.58 -0.32 -1.75 16 24 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 25 C -0.14 -2.49 10.05 -39.58 -0.40 -2.89 16 26 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 27 C -0.14 -2.82 8.40 -39.58 -0.33 -3.15 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 33 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 35 H 0.09 1.50 7.46 -51.93 -0.39 1.12 16 36 H 0.08 1.08 8.03 -51.93 -0.42 0.67 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.12 2.33 4.98 -51.93 -0.26 2.08 16 39 H 0.06 0.76 8.08 -51.92 -0.42 0.34 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.12 2.69 7.88 -52.49 -0.41 2.27 16 42 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 44 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 45 H 0.11 2.07 7.72 -52.49 -0.41 1.66 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -29.97 373.46 -7.36 -37.33 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.85 Total: 7.53 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.39 Total: -4.64 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.25 Total: -34.54 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.61 Total: -26.51 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.38 Total: 15.21 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.97 -7.36 -37.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363350148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.001 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds