Wall clock time and date at job start Tue Mar 31 2020 13:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47072 * 2 1 4 4 C 1.34231 * 117.00460 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99592 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00188 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.46887 * 180.02562 * 6 4 3 8 8 N 1.46497 * 109.47130 * 180.02562 * 7 6 4 9 9 C 1.46495 * 120.00482 * 89.99759 * 8 7 6 10 10 C 1.34776 * 119.99692 * 269.72338 * 8 7 6 11 11 O 1.21284 * 120.00035 * 5.55144 * 10 8 7 12 12 C 1.50703 * 119.99917 * 185.54654 * 10 8 7 13 13 H 1.09003 * 109.47015 * 49.36013 * 12 10 8 14 14 C 1.50698 * 109.47332 * 289.36064 * 12 10 8 15 15 H 1.08003 * 119.99824 * 335.29671 * 14 12 10 16 16 C 1.37877 * 120.00148 * 155.29595 * 14 12 10 17 17 N 1.31515 * 119.99898 * 187.78615 * 16 14 12 18 18 Si 1.86802 * 119.99896 * 7.79336 * 16 14 12 19 19 H 1.48493 * 109.47223 * 86.81873 * 18 16 14 20 20 H 1.48498 * 109.46796 * 206.81734 * 18 16 14 21 21 H 1.48506 * 109.46837 * 326.81610 * 18 16 14 22 22 C 1.50704 * 109.47066 * 169.35719 * 12 10 8 23 23 C 1.38237 * 119.99583 * 66.33006 * 22 12 10 24 24 C 1.38239 * 119.99573 * 179.78994 * 23 22 12 25 25 C 1.38237 * 120.00082 * 0.43477 * 24 23 22 26 26 C 1.38234 * 119.99767 * 359.81903 * 25 24 23 27 27 C 1.38233 * 119.99866 * 246.59975 * 22 12 10 28 28 H 1.08996 * 109.47371 * 59.99913 * 1 2 3 29 29 H 1.09002 * 109.46800 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46632 * 299.99555 * 1 2 3 31 31 H 1.09003 * 109.46835 * 240.00958 * 2 1 3 32 32 H 1.08996 * 109.47371 * 120.00086 * 2 1 3 33 33 H 1.09004 * 109.47259 * 60.00331 * 6 4 3 34 34 H 1.08998 * 109.47121 * 299.99993 * 6 4 3 35 35 H 1.08996 * 109.47200 * 59.99925 * 7 6 4 36 36 H 1.09004 * 109.46878 * 300.00229 * 7 6 4 37 37 H 1.09005 * 109.47217 * 88.42103 * 9 8 7 38 38 H 1.08992 * 109.47615 * 208.42588 * 9 8 7 39 39 H 1.09008 * 109.47172 * 328.42700 * 9 8 7 40 40 H 0.96995 * 119.99615 * 179.97438 * 17 16 14 41 41 H 1.07994 * 120.00163 * 359.97438 * 23 22 12 42 42 H 1.07993 * 119.99861 * 180.27574 * 24 23 22 43 43 H 1.07991 * 119.99990 * 179.83721 * 25 24 23 44 44 H 1.08006 * 119.99796 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.00396 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9206 2.9375 0.0000 7 6 5.4486 2.8575 -0.0014 8 7 6.0085 4.2112 -0.0003 9 6 6.2895 4.8867 1.2689 10 6 6.2702 4.8331 -1.1670 11 8 5.9499 4.3148 -2.2156 12 6 6.9608 6.1726 -1.1684 13 1 7.8467 6.1254 -0.5351 14 6 6.0198 7.2236 -0.6383 15 1 4.9520 7.0751 -0.7044 16 6 6.5219 8.3745 -0.0689 17 7 5.7114 9.2195 0.5301 18 14 8.3533 8.7338 -0.1485 19 1 8.6643 9.4413 -1.4165 20 1 8.7405 9.5880 1.0028 21 1 9.1108 7.4576 -0.0950 22 6 7.3677 6.5265 -2.5757 23 6 6.4015 6.7728 -3.5332 24 6 6.7748 7.1017 -4.8230 25 6 8.1140 7.1753 -5.1575 26 6 9.0801 6.9238 -4.2012 27 6 8.7069 6.5992 -2.9103 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.5851 3.4691 0.8905 34 1 3.5842 3.4702 -0.8895 35 1 5.7837 2.3260 -0.8921 36 1 5.7853 2.3246 0.8879 37 1 7.2992 4.6389 1.5966 38 1 6.2060 5.9649 1.1331 39 1 5.5725 4.5587 2.0217 40 1 6.0647 10.0290 0.9309 41 1 5.3552 6.7113 -3.2729 42 1 6.0200 7.2985 -5.5699 43 1 8.4056 7.4296 -6.1657 44 1 10.1264 6.9809 -4.4627 45 1 9.4616 6.4029 -2.1633 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363350148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:30 Heat of formation + Delta-G solvation = -116.510804 kcal Electronic energy + Delta-G solvation = -26998.239055 eV Core-core repulsion = 23173.122475 eV Total energy + Delta-G solvation = -3825.116581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68764 -41.08699 -39.55470 -37.88884 -36.60815 -35.60993 -33.49959 -32.99795 -32.11278 -31.62905 -29.45418 -27.64316 -26.39785 -24.93623 -23.84061 -23.35582 -22.40099 -21.72540 -19.98212 -19.07238 -18.85459 -18.08823 -17.76484 -17.53598 -17.41311 -16.66014 -16.42463 -15.93607 -15.66837 -15.58623 -15.22206 -14.77086 -14.43253 -14.34295 -14.18481 -14.05961 -13.86372 -13.71004 -13.61898 -13.42437 -13.20604 -12.98062 -12.92443 -12.86748 -12.62620 -12.51919 -12.20838 -12.06854 -11.92323 -11.66444 -11.57945 -11.55437 -11.42472 -10.83083 -10.48752 -9.64311 -9.60846 -9.36642 -8.32516 -6.36191 0.62775 0.69986 1.06536 1.34855 1.43527 1.46135 1.48944 1.87313 2.30949 2.32534 2.99492 3.12853 3.64216 3.81587 3.91540 3.98558 4.06138 4.09985 4.21346 4.22164 4.32002 4.33793 4.39902 4.41023 4.52141 4.63205 4.68616 4.77358 4.81601 4.82290 4.90165 4.91312 4.94296 5.11951 5.19839 5.28570 5.33078 5.40222 5.43629 5.68460 5.72670 5.75508 5.96450 6.21915 6.29201 6.48573 6.62369 6.63697 7.24976 7.35999 8.80858 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014557 B = 0.003582 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.057221 B = 7814.254621 C = 8750.303001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.365 6.365 4 C 0.478 3.522 5 O -0.534 6.534 6 C -0.125 4.125 7 C 0.134 3.866 8 N -0.610 5.610 9 C 0.061 3.939 10 C 0.533 3.467 11 O -0.582 6.582 12 C 0.028 3.972 13 H 0.075 0.925 14 C -0.491 4.491 15 H 0.042 0.958 16 C 0.047 3.953 17 N -0.923 5.923 18 Si 0.910 3.090 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.233 1.233 22 C -0.064 4.064 23 C -0.096 4.096 24 C -0.136 4.136 25 C -0.136 4.136 26 C -0.129 4.129 27 C -0.155 4.155 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.127 0.873 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.270 0.730 41 H 0.093 0.907 42 H 0.134 0.866 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.465 -12.054 0.143 12.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.281 6.281 4 C 0.322 3.678 5 O -0.424 6.424 6 C -0.164 4.164 7 C 0.011 3.989 8 N -0.342 5.342 9 C -0.081 4.081 10 C 0.323 3.677 11 O -0.462 6.462 12 C 0.007 3.993 13 H 0.093 0.907 14 C -0.528 4.528 15 H 0.060 0.940 16 C -0.154 4.154 17 N -0.561 5.561 18 Si 0.735 3.265 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.156 1.156 22 C -0.065 4.065 23 C -0.114 4.114 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.146 4.146 27 C -0.173 4.173 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.145 0.855 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.152 0.848 43 H 0.167 0.833 44 H 0.165 0.835 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.467 -12.472 -0.262 12.561 hybrid contribution 0.320 0.478 0.140 0.592 sum -1.148 -11.994 -0.122 12.049 Atomic orbital electron populations 1.21837 0.90447 1.04474 1.03635 1.23344 0.97133 0.79001 1.02759 1.86533 1.23915 1.34128 1.83567 1.23637 0.80739 0.92300 0.71124 1.90639 1.60922 1.43930 1.46908 1.21748 0.97015 0.90829 1.06766 1.21119 0.90393 0.83271 1.04153 1.47758 1.63292 1.16040 1.07127 1.22266 1.01480 1.00599 0.83727 1.21017 0.77523 0.86367 0.82769 1.90570 1.55013 1.67948 1.32675 1.18465 0.97495 0.91125 0.92237 0.90733 1.20268 0.92284 1.01945 1.38323 0.93968 1.25470 1.01210 0.95338 0.93357 1.69975 1.37262 1.12528 1.36338 0.86300 0.82180 0.80139 0.77856 1.20196 1.21077 1.15587 1.20198 0.93489 0.97040 0.95806 1.20856 0.98661 0.98231 0.93673 1.21385 0.97464 1.00626 0.95956 1.21354 0.92383 1.01226 1.00423 1.21369 1.00655 0.99944 0.92660 1.21287 0.95129 1.02955 0.97910 0.91670 0.87850 0.91167 0.91478 0.90682 0.85505 0.88709 0.91529 0.87652 0.91645 0.89287 0.89447 0.92052 0.88905 0.84798 0.83298 0.83503 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.29 71.98 0.74 -1.20 16 2 C 0.05 0.98 6.19 71.98 0.45 1.43 16 3 O -0.36 -9.31 10.22 -51.43 -0.53 -9.84 16 4 C 0.48 13.53 7.96 71.24 0.57 14.09 16 5 O -0.53 -17.13 15.73 21.97 0.35 -16.78 16 6 C -0.12 -3.54 6.14 29.85 0.18 -3.36 16 7 C 0.13 4.12 4.67 86.38 0.40 4.52 16 8 N -0.61 -21.73 2.87 -846.76 -2.43 -24.16 16 9 C 0.06 1.90 10.01 127.77 1.28 3.18 16 10 C 0.53 23.16 6.88 87.66 0.60 23.77 16 11 O -0.58 -27.97 14.89 -3.04 -0.05 -28.02 16 12 C 0.03 1.27 1.13 -13.03 -0.01 1.25 16 13 H 0.07 3.19 5.31 -2.39 -0.01 3.18 16 14 C -0.49 -25.01 5.88 25.60 0.15 -24.86 16 15 H 0.04 2.44 8.05 -2.91 -0.02 2.42 16 16 C 0.05 2.47 5.41 84.65 0.46 2.92 16 17 N -0.92 -51.76 13.96 21.45 0.30 -51.47 16 18 Si 0.91 40.12 25.76 68.60 1.77 41.89 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.23 -9.12 5.90 99.48 0.59 -8.53 16 22 C -0.06 -2.86 3.59 -19.86 -0.07 -2.93 16 23 C -0.10 -4.26 8.10 22.27 0.18 -4.08 16 24 C -0.14 -5.01 10.05 22.27 0.22 -4.79 16 25 C -0.14 -4.35 10.05 22.27 0.22 -4.12 16 26 C -0.13 -4.23 10.05 22.27 0.22 -4.01 16 27 C -0.15 -6.01 8.40 22.27 0.19 -5.82 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 32 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 33 H 0.13 3.08 8.14 -2.38 -0.02 3.06 16 34 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.07 2.34 7.46 -2.39 -0.02 2.33 16 36 H 0.11 2.70 8.03 -2.38 -0.02 2.68 16 37 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.09 3.45 4.98 -2.39 -0.01 3.44 16 39 H 0.09 2.18 8.08 -2.38 -0.02 2.16 16 40 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 41 H 0.09 4.48 7.88 -2.91 -0.02 4.46 16 42 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 43 H 0.15 3.54 8.06 -2.92 -0.02 3.52 16 44 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 45 H 0.12 4.29 7.72 -2.91 -0.02 4.27 16 Total: -1.00 -67.60 373.46 6.05 -61.56 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.85 Total: 30.81 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 5.78 Total: -4.00 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -2.13 Total: -75.62 kcal Atomic # 8 Polarization: -54.41 SS G_CDS: -0.23 Total: -54.64 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 1.77 Total: 41.89 kcal Total: -67.60 6.05 -61.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363350148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.953 kcal (2) G-P(sol) polarization free energy of solvation -67.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds