Wall clock time and date at job start Tue Mar 31 2020 12:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46859 * 2 1 4 4 O 1.45201 * 109.47280 * 119.99921 * 2 1 3 5 5 C 1.34235 * 116.99732 * 150.00107 * 4 2 1 6 6 O 1.20829 * 119.99991 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99867 * 180.02562 * 5 4 2 8 8 H 1.09003 * 109.47147 * 59.99978 * 7 5 4 9 9 C 1.53002 * 109.47158 * 300.00203 * 7 5 4 10 10 N 1.46504 * 109.47176 * 179.97438 * 7 5 4 11 11 C 1.34767 * 119.99795 * 204.99721 * 10 7 5 12 12 O 1.21280 * 120.00776 * 0.02562 * 11 10 7 13 13 C 1.50707 * 119.99732 * 179.97438 * 11 10 7 14 14 H 1.09004 * 109.46924 * 60.00533 * 13 11 10 15 15 C 1.50699 * 109.47406 * 300.00624 * 13 11 10 16 16 H 1.08003 * 119.99921 * 325.09578 * 15 13 11 17 17 C 1.37875 * 120.00082 * 145.09430 * 15 13 11 18 18 N 1.31517 * 119.99996 * 184.98054 * 17 15 13 19 19 Si 1.86800 * 119.99919 * 4.98632 * 17 15 13 20 20 H 1.48495 * 109.47235 * 84.66630 * 19 17 15 21 21 H 1.48496 * 109.46802 * 204.66524 * 19 17 15 22 22 H 1.48493 * 109.47071 * 324.66477 * 19 17 15 23 23 C 1.50697 * 109.46930 * 180.02562 * 13 11 10 24 24 C 1.38236 * 120.00354 * 65.02570 * 23 13 11 25 25 C 1.38234 * 120.00350 * 179.78242 * 24 23 13 26 26 C 1.38242 * 119.99624 * 0.44714 * 25 24 23 27 27 C 1.38229 * 120.00210 * 359.80249 * 26 25 24 28 28 C 1.38238 * 120.00143 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47212 * 299.99811 * 1 2 3 30 30 H 1.09001 * 109.47768 * 59.99883 * 1 2 3 31 31 H 1.09004 * 109.47339 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47212 * 240.00189 * 2 1 3 33 33 H 1.08993 * 109.47107 * 299.99941 * 3 2 1 34 34 H 1.09002 * 109.46883 * 60.00598 * 3 2 1 35 35 H 1.09007 * 109.46782 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47100 * 180.02562 * 9 7 5 37 37 H 1.08994 * 109.47141 * 59.99623 * 9 7 5 38 38 H 1.09003 * 109.46908 * 299.99921 * 9 7 5 39 39 H 0.96997 * 119.99238 * 25.00398 * 10 7 5 40 40 H 0.96995 * 119.99758 * 180.02562 * 18 17 15 41 41 H 1.08004 * 119.99315 * 359.97438 * 24 23 13 42 42 H 1.07990 * 120.00293 * 180.27542 * 25 24 23 43 43 H 1.07999 * 119.99762 * 179.83193 * 26 25 24 44 44 H 1.07996 * 120.00094 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.00127 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 3.1937 -1.3170 1.0851 6 8 3.8015 -1.2996 0.0409 7 6 3.7595 -2.0496 2.2742 8 1 3.0664 -2.8325 2.5821 9 6 3.9642 -1.0667 3.4287 10 7 5.0449 -2.6514 1.9107 11 6 5.4965 -3.7309 2.5792 12 8 4.8388 -4.2046 3.4814 13 6 6.8185 -4.3502 2.2049 14 1 7.6125 -3.6135 2.3273 15 6 6.7718 -4.8045 0.7688 16 1 5.8531 -5.1936 0.3551 17 6 7.9018 -4.7234 -0.0170 18 7 7.8372 -5.0270 -1.2950 19 14 9.5245 -4.1824 0.7336 20 1 10.2004 -5.3532 1.3481 21 1 10.3931 -3.6092 -0.3256 22 1 9.2701 -3.1549 1.7750 23 6 7.0891 -5.5341 3.0972 24 6 6.2704 -6.6463 3.0373 25 6 6.5213 -7.7340 3.8527 26 6 7.5855 -7.7058 4.7346 27 6 8.4011 -6.5916 4.7982 28 6 8.1530 -5.5057 3.9796 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 3.1300 1.4425 0.0005 36 1 4.3739 -1.5966 4.2886 37 1 3.0078 -0.6194 3.6990 38 1 4.6574 -0.2838 3.1208 39 1 5.5707 -2.2727 1.1890 40 1 8.6322 -4.9703 -1.8477 41 1 5.4366 -6.6666 2.3512 42 1 5.8844 -8.6047 3.8027 43 1 7.7799 -8.5545 5.3735 44 1 9.2327 -6.5697 5.4869 45 1 8.7900 -4.6349 4.0296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433481354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:52 Heat of formation + Delta-G solvation = -126.220270 kcal Electronic energy + Delta-G solvation = -27128.284062 eV Core-core repulsion = 23302.746448 eV Total energy + Delta-G solvation = -3825.537615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.98279 -40.93622 -39.50550 -38.09546 -36.11558 -35.54841 -34.18268 -33.39212 -31.70819 -31.61316 -29.29757 -28.21175 -26.33856 -25.46080 -23.50936 -23.28536 -22.26190 -21.45152 -21.10610 -19.18725 -19.06192 -18.29019 -17.71605 -17.36582 -17.20609 -16.55487 -16.28890 -16.02551 -15.49359 -15.39147 -15.23216 -14.89717 -14.60478 -14.45522 -14.30371 -14.11188 -13.82516 -13.72879 -13.49354 -13.28345 -13.21236 -13.15809 -12.98791 -12.76873 -12.73099 -12.70200 -12.03392 -11.97654 -11.93999 -11.67352 -11.62794 -11.47153 -11.41996 -10.93259 -10.60937 -10.19517 -9.63166 -9.37168 -8.35594 -6.44191 0.64828 0.70966 0.97978 1.28754 1.31515 1.38370 1.42905 1.81414 2.28933 2.36590 2.95674 3.15550 3.44679 3.79126 3.90298 3.92046 3.99447 4.10746 4.12510 4.21767 4.26937 4.37178 4.40585 4.57680 4.63136 4.68117 4.73383 4.75370 4.80117 4.83011 4.83409 4.91251 5.09890 5.13946 5.18918 5.20723 5.32853 5.36234 5.39094 5.43886 5.71062 5.75176 5.94523 6.18409 6.30676 6.50210 6.57832 6.58418 7.20570 7.30653 8.79384 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014565 B = 0.003855 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.987842 B = 7261.729656 C = 8314.989056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.065 3.935 3 C -0.165 4.165 4 O -0.344 6.344 5 C 0.465 3.535 6 O -0.526 6.526 7 C 0.150 3.850 8 H 0.117 0.883 9 C -0.145 4.145 10 N -0.713 5.713 11 C 0.542 3.458 12 O -0.572 6.572 13 C 0.023 3.977 14 H 0.082 0.918 15 C -0.501 4.501 16 H 0.034 0.966 17 C 0.034 3.966 18 N -0.932 5.932 19 Si 0.924 3.076 20 H -0.264 1.264 21 H -0.284 1.284 22 H -0.232 1.232 23 C -0.055 4.055 24 C -0.103 4.103 25 C -0.133 4.133 26 C -0.135 4.135 27 C -0.124 4.124 28 C -0.151 4.151 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.411 0.589 40 H 0.270 0.730 41 H 0.088 0.912 42 H 0.134 0.866 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.239 10.198 9.284 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.011 3.989 3 C -0.222 4.222 4 O -0.260 6.260 5 C 0.308 3.692 6 O -0.415 6.415 7 C 0.043 3.957 8 H 0.134 0.866 9 C -0.203 4.203 10 N -0.367 5.367 11 C 0.331 3.669 12 O -0.452 6.452 13 C 0.001 3.999 14 H 0.100 0.900 15 C -0.539 4.539 16 H 0.052 0.948 17 C -0.167 4.167 18 N -0.570 5.570 19 Si 0.748 3.252 20 H -0.188 1.188 21 H -0.210 1.210 22 H -0.156 1.156 23 C -0.056 4.056 24 C -0.122 4.122 25 C -0.151 4.151 26 C -0.153 4.153 27 C -0.142 4.142 28 C -0.169 4.169 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.248 0.752 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.152 0.848 43 H 0.168 0.832 44 H 0.167 0.833 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.485 9.902 9.395 16.072 hybrid contribution 0.892 0.051 -1.277 1.558 sum -7.593 9.953 8.118 14.920 Atomic orbital electron populations 1.21905 0.89771 1.03489 1.04784 1.23125 0.96922 0.93229 0.85611 1.22198 1.00996 0.94187 1.04785 1.86538 1.34985 1.62272 1.42188 1.23794 0.79817 0.76197 0.89392 1.90712 1.60272 1.59046 1.31437 1.20475 0.87183 0.96926 0.91077 0.86576 1.22067 1.04667 0.97841 0.95752 1.45802 1.20824 1.31391 1.38696 1.20977 0.88316 0.77936 0.79708 1.90572 1.59914 1.62737 1.31981 1.18489 0.92881 0.93624 0.94861 0.90023 1.20437 0.97599 1.43537 0.92330 0.94804 1.25759 1.02153 0.94171 0.94570 1.70010 1.30878 1.49340 1.06733 0.86074 0.79536 0.80417 0.79196 1.18835 1.21024 1.15555 1.20033 0.95223 0.96171 0.94214 1.20817 0.98766 0.94091 0.98513 1.21348 0.98987 0.98047 0.96694 1.21353 0.95316 0.99181 0.99469 1.21366 1.00303 0.93223 0.99259 1.21245 0.98319 1.00135 0.97208 0.90111 0.88141 0.92186 0.91699 0.88602 0.90011 0.93875 0.91063 0.87924 0.91215 0.75202 0.92104 0.89408 0.84813 0.83196 0.83311 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.57 71.98 0.69 -1.37 16 2 C 0.07 1.40 3.18 30.59 0.10 1.50 16 3 C -0.16 -2.85 9.55 71.98 0.69 -2.17 16 4 O -0.34 -8.85 9.78 -51.46 -0.50 -9.35 16 5 C 0.47 14.77 7.30 71.24 0.52 15.29 16 6 O -0.53 -20.39 15.06 21.95 0.33 -20.06 16 7 C 0.15 4.74 3.09 44.24 0.14 4.88 16 8 H 0.12 3.80 7.58 -2.39 -0.02 3.78 16 9 C -0.15 -3.52 9.42 71.98 0.68 -2.84 16 10 N -0.71 -27.90 4.85 -446.09 -2.16 -30.06 16 11 C 0.54 23.97 7.00 87.66 0.61 24.58 16 12 O -0.57 -26.52 15.03 -3.03 -0.05 -26.57 16 13 C 0.02 1.06 1.89 -13.03 -0.02 1.04 16 14 H 0.08 3.62 4.89 -2.38 -0.01 3.61 16 15 C -0.50 -27.60 8.06 25.60 0.21 -27.39 16 16 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 17 C 0.03 1.87 5.47 84.65 0.46 2.34 16 18 N -0.93 -56.35 13.96 21.45 0.30 -56.05 16 19 Si 0.92 41.67 27.18 68.60 1.86 43.54 16 20 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.23 -9.24 6.06 99.48 0.60 -8.64 16 23 C -0.06 -2.48 4.09 -19.86 -0.08 -2.56 16 24 C -0.10 -4.61 8.25 22.27 0.18 -4.42 16 25 C -0.13 -4.81 10.05 22.27 0.22 -4.59 16 26 C -0.14 -4.21 10.05 22.27 0.22 -3.98 16 27 C -0.12 -3.95 10.05 22.27 0.22 -3.73 16 28 C -0.15 -5.78 9.46 22.27 0.21 -5.57 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.06 1.68 7.16 -2.39 -0.02 1.66 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.10 1.92 8.11 -2.39 -0.02 1.91 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.41 16.82 7.68 -92.71 -0.71 16.11 16 40 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.09 4.27 7.93 -2.91 -0.02 4.25 16 42 H 0.13 4.08 8.06 -2.92 -0.02 4.05 16 43 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 44 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 45 H 0.12 4.22 7.95 -2.91 -0.02 4.20 16 Total: -1.00 -71.54 379.58 5.00 -66.53 By element: Atomic # 1 Polarization: 40.85 SS G_CDS: 0.17 Total: 41.02 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 5.05 Total: -9.00 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -1.87 Total: -86.11 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -0.22 Total: -55.98 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.86 Total: 43.54 kcal Total: -71.54 5.00 -66.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433481354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.686 kcal (2) G-P(sol) polarization free energy of solvation -71.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds