Wall clock time and date at job start Tue Mar 31 2020 12:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47300 * 2 1 4 4 O 1.45198 * 109.47204 * 120.00244 * 2 1 3 5 5 C 1.34233 * 117.00199 * 89.99532 * 4 2 1 6 6 O 1.20825 * 119.99471 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00150 * 180.02562 * 5 4 2 8 8 H 1.09000 * 109.47320 * 59.99889 * 7 5 4 9 9 C 1.53008 * 109.46996 * 300.00237 * 7 5 4 10 10 N 1.46498 * 109.47059 * 180.02562 * 7 5 4 11 11 C 1.34778 * 119.99815 * 205.00082 * 10 7 5 12 12 O 1.21281 * 120.00064 * 0.02562 * 11 10 7 13 13 C 1.50705 * 120.00008 * 179.97438 * 11 10 7 14 14 H 1.09001 * 109.46696 * 299.99872 * 13 11 10 15 15 C 1.50695 * 109.46665 * 59.99959 * 13 11 10 16 16 H 1.08000 * 119.99607 * 235.34309 * 15 13 11 17 17 C 1.37875 * 120.00160 * 55.35465 * 15 13 11 18 18 N 1.31517 * 120.00129 * 1.97205 * 17 15 13 19 19 Si 1.86802 * 120.00124 * 181.98047 * 17 15 13 20 20 H 1.48497 * 109.47285 * 89.99240 * 19 17 15 21 21 H 1.48497 * 109.47328 * 209.99826 * 19 17 15 22 22 H 1.48504 * 109.46699 * 329.99681 * 19 17 15 23 23 C 1.50698 * 109.47103 * 180.02562 * 13 11 10 24 24 C 1.38237 * 119.99885 * 226.94277 * 23 13 11 25 25 C 1.38230 * 119.99741 * 179.79216 * 24 23 13 26 26 C 1.38241 * 120.00279 * 0.43020 * 25 24 23 27 27 C 1.38236 * 119.99781 * 359.81723 * 26 25 24 28 28 C 1.38232 * 120.00088 * 359.97438 * 27 26 25 29 29 H 1.09007 * 109.47205 * 300.00014 * 1 2 3 30 30 H 1.09000 * 109.47297 * 59.99225 * 1 2 3 31 31 H 1.08995 * 109.47530 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47070 * 239.99887 * 2 1 3 33 33 H 1.09001 * 109.46934 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47488 * 299.99894 * 3 2 1 35 35 H 1.08998 * 109.46972 * 60.00461 * 3 2 1 36 36 H 1.09000 * 109.46801 * 299.99969 * 9 7 5 37 37 H 1.09004 * 109.46775 * 180.02562 * 9 7 5 38 38 H 1.08995 * 109.46970 * 60.00176 * 9 7 5 39 39 H 0.96999 * 120.00375 * 24.99698 * 10 7 5 40 40 H 0.96999 * 120.00077 * 180.02562 * 18 17 15 41 41 H 1.07993 * 119.99619 * 359.97438 * 24 23 13 42 42 H 1.08005 * 120.00174 * 180.27094 * 25 24 23 43 43 H 1.08000 * 119.99707 * 179.83866 * 26 25 24 44 44 H 1.08002 * 119.99867 * 179.97438 * 27 26 25 45 45 H 1.07996 * 120.00019 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0139 -0.6845 1.1855 5 6 2.2170 -2.0076 1.0851 6 8 1.9980 -2.5748 0.0410 7 6 2.7181 -2.7855 2.2745 8 1 2.0087 -2.6896 3.0965 9 6 4.0782 -2.2345 2.7080 10 7 2.8572 -4.1978 1.9110 11 6 2.7936 -5.1484 2.8643 12 8 2.6208 -4.8346 4.0230 13 6 2.9360 -6.6013 2.4903 14 1 2.1457 -6.8758 1.7916 15 6 4.2785 -6.8240 1.8431 16 1 4.3374 -7.2726 0.8624 17 6 5.4316 -6.4553 2.5029 18 7 5.3623 -5.9450 3.7130 19 14 7.0925 -6.6803 1.6779 20 1 7.4347 -5.4550 0.9119 21 1 8.1300 -6.9235 2.7120 22 1 7.0328 -7.8412 0.7538 23 6 2.8279 -7.4520 3.7296 24 6 3.7466 -8.4592 3.9589 25 6 3.6499 -9.2366 5.0977 26 6 2.6294 -9.0127 6.0030 27 6 1.7078 -8.0088 5.7711 28 6 1.8069 -7.2285 4.6344 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 4.7876 -2.3304 1.8860 37 1 4.4408 -2.7975 3.5681 38 1 3.9751 -1.1837 2.9783 39 1 2.9949 -4.4488 0.9843 40 1 6.1736 -5.6852 4.1770 41 1 4.5414 -8.6367 3.2497 42 1 4.3702 -10.0207 5.2791 43 1 2.5524 -9.6219 6.8915 44 1 0.9102 -7.8342 6.4782 45 1 1.0866 -6.4446 4.4531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433481366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:55 Heat of formation + Delta-G solvation = -104.927419 kcal Electronic energy + Delta-G solvation = -27552.686191 eV Core-core repulsion = 23728.071904 eV Total energy + Delta-G solvation = -3824.614287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.61578 -38.98683 -37.62130 -36.72851 -34.34829 -33.60331 -33.19143 -30.86916 -29.98923 -29.65491 -27.49805 -27.11438 -24.84601 -23.89148 -22.02758 -21.25101 -20.73690 -20.07032 -19.29222 -17.70318 -16.99910 -16.47415 -16.12079 -15.51556 -15.25019 -14.91623 -14.78089 -14.34059 -14.00638 -13.72269 -13.65180 -13.44789 -13.16301 -12.60486 -12.52083 -12.49842 -12.37077 -12.18856 -12.07106 -11.97920 -11.88583 -11.65034 -11.34560 -11.16680 -11.06775 -10.97092 -10.75764 -10.61245 -10.43928 -10.11970 -10.03133 -9.66641 -9.37860 -8.72170 -8.36826 -8.17975 -7.67813 -7.38986 -6.13508 -4.29150 2.30667 2.51773 2.61788 2.64905 3.20377 3.29956 3.31148 4.03260 4.24271 4.36827 4.60326 4.69481 4.72804 4.95879 5.03756 5.13513 5.30370 5.45803 5.47143 5.50386 5.56307 5.62539 5.82445 5.87162 5.94813 5.96737 6.01014 6.07596 6.17447 6.39473 6.46942 6.55527 6.68394 6.69607 6.80973 6.91261 7.14388 7.22837 7.35077 7.56727 7.65937 7.70238 7.80216 7.85121 8.17457 8.28848 8.56631 8.78065 9.37143 9.59937 10.86857 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.004010 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.327133 B = 6981.359054 C = 8167.909190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.077 3.923 3 C -0.149 4.149 4 O -0.350 6.350 5 C 0.461 3.539 6 O -0.504 6.504 7 C 0.162 3.838 8 H 0.116 0.884 9 C -0.153 4.153 10 N -0.723 5.723 11 C 0.557 3.443 12 O -0.545 6.545 13 C 0.058 3.942 14 H 0.059 0.941 15 C -0.539 4.539 16 H 0.067 0.933 17 C 0.076 3.924 18 N -0.842 5.842 19 Si 0.885 3.115 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.271 1.271 23 C -0.014 4.014 24 C -0.064 4.064 25 C -0.147 4.147 26 C -0.145 4.145 27 C -0.144 4.144 28 C -0.101 4.101 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.406 0.594 40 H 0.265 0.735 41 H 0.128 0.872 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.997 9.072 -4.345 11.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 C -0.206 4.206 4 O -0.267 6.267 5 C 0.303 3.697 6 O -0.391 6.391 7 C 0.054 3.946 8 H 0.133 0.867 9 C -0.211 4.211 10 N -0.379 5.379 11 C 0.347 3.653 12 O -0.421 6.421 13 C 0.037 3.963 14 H 0.077 0.923 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.132 4.132 18 N -0.474 5.474 19 Si 0.713 3.287 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.015 4.015 24 C -0.082 4.082 25 C -0.166 4.166 26 C -0.163 4.163 27 C -0.162 4.162 28 C -0.119 4.119 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.242 0.758 40 H 0.075 0.925 41 H 0.146 0.854 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.090 9.233 -3.655 11.649 hybrid contribution 1.235 0.011 -0.825 1.485 sum -4.856 9.244 -4.480 11.362 Atomic orbital electron populations 1.22205 0.94395 1.03185 1.02909 1.22717 0.94571 0.93050 0.87393 1.21879 1.02180 0.93525 1.02997 1.86581 1.76998 1.22233 1.40887 1.24174 0.73795 0.81249 0.90456 1.90627 1.47868 1.69854 1.30709 1.20139 0.99272 0.83003 0.92151 0.86689 1.22089 0.94893 1.00784 1.03362 1.45778 1.77007 1.02582 1.12542 1.21116 0.71744 0.88322 0.84130 1.90543 1.49072 1.83262 1.19180 1.17861 0.98473 0.87227 0.92726 0.92307 1.20704 0.88687 1.44475 1.03819 0.91441 1.25027 0.99079 0.94554 0.94562 1.70069 1.28628 1.38202 1.10535 0.86684 0.83928 0.78760 0.79358 1.20595 1.21129 1.19604 1.19790 0.92209 0.93854 0.95611 1.21139 0.97447 0.93641 0.95983 1.20987 0.98596 1.00829 0.96142 1.20774 0.96921 0.99440 0.99154 1.20815 0.99717 0.97570 0.98134 1.20967 0.98830 0.97518 0.94557 0.91524 0.90850 0.91861 0.89741 0.91635 0.90538 0.91373 0.92465 0.89450 0.91724 0.75806 0.92522 0.85420 0.88059 0.88235 0.88118 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 9.55 37.15 0.35 -1.29 16 2 C 0.08 0.86 3.18 -26.73 -0.09 0.78 16 3 C -0.15 -1.22 9.57 37.16 0.36 -0.87 16 4 O -0.35 -4.85 9.78 -39.27 -0.38 -5.24 16 5 C 0.46 7.44 7.30 36.00 0.26 7.70 16 6 O -0.50 -9.00 15.06 -18.75 -0.28 -9.28 16 7 C 0.16 2.84 3.09 -69.08 -0.21 2.63 16 8 H 0.12 2.03 7.58 -51.93 -0.39 1.64 16 9 C -0.15 -2.59 9.42 37.16 0.35 -2.24 16 10 N -0.72 -14.64 4.85 -54.93 -0.27 -14.90 16 11 C 0.56 12.90 5.42 -10.98 -0.06 12.84 16 12 O -0.54 -13.83 13.62 5.56 0.08 -13.76 16 13 C 0.06 1.36 2.77 -94.08 -0.26 1.10 16 14 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 15 C -0.54 -13.07 7.11 -34.44 -0.24 -13.32 16 16 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 17 C 0.08 1.87 4.01 -17.82 -0.07 1.80 16 18 N -0.84 -22.20 10.90 55.43 0.60 -21.60 16 19 Si 0.89 19.71 29.54 -169.99 -5.02 14.69 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 23 C -0.01 -0.32 4.51 -104.62 -0.47 -0.79 16 24 C -0.06 -1.49 8.21 -39.58 -0.32 -1.81 16 25 C -0.15 -3.07 10.05 -39.58 -0.40 -3.46 16 26 C -0.14 -2.85 10.05 -39.58 -0.40 -3.25 16 27 C -0.14 -2.94 10.05 -39.58 -0.40 -3.34 16 28 C -0.10 -2.26 8.21 -39.58 -0.33 -2.58 16 29 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.02 7.16 -51.93 -0.37 0.65 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 38 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 39 H 0.41 8.13 7.68 -40.82 -0.31 7.81 16 40 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.13 3.05 6.04 -52.49 -0.32 2.74 16 42 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 43 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 45 H 0.11 2.36 7.01 -52.49 -0.37 1.99 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -28.97 374.71 -8.36 -37.33 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -6.80 Total: 13.22 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -1.93 Total: -6.10 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.34 Total: -36.50 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.59 Total: -28.28 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.97 -8.36 -37.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433481366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.599 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds