Wall clock time and date at job start Tue Mar 31 2020 12:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46877 * 2 1 4 4 C 1.46506 * 120.00283 * 270.00009 * 3 2 1 5 5 C 1.52999 * 109.47029 * 270.00555 * 4 3 2 6 6 C 1.50697 * 109.47065 * 179.97438 * 5 4 3 7 7 O 1.20831 * 120.00078 * 359.97438 * 6 5 4 8 8 O 1.34229 * 119.99888 * 179.97438 * 6 5 4 9 9 C 1.34773 * 120.00010 * 90.00438 * 3 2 1 10 10 O 1.21284 * 120.00085 * 180.02562 * 9 3 2 11 11 C 1.50706 * 119.99984 * 359.97438 * 9 3 2 12 12 C 1.52994 * 109.46995 * 180.02562 * 11 9 3 13 13 H 1.08997 * 109.47639 * 54.05331 * 12 11 9 14 14 C 1.50698 * 109.46998 * 294.05407 * 12 11 9 15 15 H 1.08002 * 120.00397 * 330.08382 * 14 12 11 16 16 C 1.37877 * 119.99983 * 150.08385 * 14 12 11 17 17 N 1.31513 * 120.00147 * 6.55933 * 16 14 12 18 18 Si 1.86806 * 120.00054 * 186.55449 * 16 14 12 19 19 H 1.48505 * 109.47142 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.47340 * 300.00345 * 18 16 14 21 21 H 1.48505 * 109.46728 * 60.00313 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38238 * 119.99674 * 0.39266 * 24 23 22 26 26 C 1.38237 * 119.99909 * 359.86442 * 25 24 23 27 27 C 1.38229 * 119.99861 * 359.94762 * 26 25 24 28 28 H 1.08998 * 109.47538 * 299.99944 * 1 2 3 29 29 H 1.09008 * 109.47339 * 59.99937 * 1 2 3 30 30 H 1.09001 * 109.47169 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46777 * 240.00583 * 2 1 3 32 32 H 1.08993 * 109.46874 * 120.00081 * 2 1 3 33 33 H 1.09004 * 109.46669 * 29.99915 * 4 3 2 34 34 H 1.08996 * 109.47063 * 149.99789 * 4 3 2 35 35 H 1.09003 * 109.47191 * 299.99676 * 5 4 3 36 36 H 1.08998 * 109.47332 * 59.99830 * 5 4 3 37 37 H 0.96703 * 116.99682 * 179.97438 * 8 6 5 38 38 H 1.08997 * 109.46866 * 60.00030 * 11 9 3 39 39 H 1.09004 * 109.46662 * 299.99914 * 11 9 3 40 40 H 0.96997 * 120.00185 * 354.72930 * 17 16 14 41 41 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 42 42 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 43 43 H 1.08006 * 119.99774 * 179.83158 * 25 24 23 44 44 H 1.07995 * 119.99599 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8315 -1.7105 6 6 3.9584 2.5414 -3.0158 7 8 3.0723 3.1744 -3.5394 8 8 5.1663 2.4706 -3.5968 9 6 2.2430 2.0165 1.1672 10 8 2.6467 3.1602 1.1672 11 6 1.9914 1.3063 2.4723 12 6 2.3223 2.2438 3.6352 13 1 1.7695 3.1760 3.5191 14 6 3.8011 2.5341 3.6411 15 1 4.4975 1.7979 3.2677 16 6 4.2650 3.7396 4.1232 17 7 3.4336 4.5827 4.6956 18 14 6.0745 4.1754 3.9635 19 1 6.3150 5.5157 4.5562 20 1 6.8924 3.1639 4.6798 21 1 6.4545 4.1930 2.5280 22 6 1.9340 1.5880 4.9353 23 6 2.5727 0.4324 5.3444 24 6 2.2192 -0.1670 6.5387 25 6 1.2213 0.3848 7.3202 26 6 0.5789 1.5375 6.9085 27 6 0.9351 2.1390 5.7160 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5816 1.6878 -2.0284 34 1 2.0954 3.1411 -1.1384 35 1 4.3883 2.2156 -0.9508 36 1 3.8744 0.7623 -1.8408 37 1 5.2793 2.9421 -4.4336 38 1 2.6212 0.4186 2.5301 39 1 0.9432 1.0125 2.5299 40 1 2.4828 4.3915 4.7107 41 1 3.3498 -0.0008 4.7320 42 1 2.7208 -1.0678 6.8602 43 1 0.9432 -0.0850 8.2521 44 1 -0.2010 1.9683 7.5189 45 1 0.4335 3.0398 5.3946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610000622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:08 Heat of formation + Delta-G solvation = -113.877501 kcal Electronic energy + Delta-G solvation = -27219.852514 eV Core-core repulsion = 23394.850122 eV Total energy + Delta-G solvation = -3825.002392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.40216 -39.49389 -38.39475 -36.34004 -35.75733 -34.31554 -32.56252 -31.24465 -30.12275 -29.72475 -28.85373 -25.72625 -24.33555 -23.27835 -22.65957 -21.68479 -21.14227 -19.94106 -18.57121 -18.08568 -16.95495 -16.86522 -16.64788 -16.08932 -15.73151 -15.44534 -14.76758 -14.42375 -14.11260 -13.76560 -13.67153 -13.55277 -13.39225 -13.16313 -12.96765 -12.63184 -12.36579 -12.24508 -12.13699 -12.04261 -11.68996 -11.63302 -11.50638 -11.22597 -11.06141 -10.83514 -10.71089 -10.69452 -10.43610 -10.14866 -10.05203 -9.64398 -9.05494 -8.65009 -8.43955 -8.27211 -8.15122 -7.64437 -6.23933 -3.91967 2.12244 2.17938 2.23711 2.79052 3.35630 3.48377 3.51232 3.54280 3.69618 4.59576 4.65745 4.77103 4.83800 4.95144 5.18690 5.22417 5.29845 5.38599 5.45657 5.56358 5.58819 5.62091 5.71590 5.75155 5.79281 5.82355 5.97664 6.01914 6.09444 6.12598 6.18519 6.30758 6.38677 6.41780 6.65405 6.76165 6.82393 6.92533 7.18959 7.21429 7.36822 7.70771 7.78334 7.79702 7.85283 8.21211 8.49358 8.90096 8.97177 9.77517 11.16303 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.004338 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.744215 B = 6453.073007 C = 8105.901140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 N -0.630 5.630 4 C 0.132 3.868 5 C -0.133 4.133 6 C 0.487 3.513 7 O -0.519 6.519 8 O -0.518 6.518 9 C 0.516 3.484 10 O -0.493 6.493 11 C -0.114 4.114 12 C 0.071 3.929 13 H 0.051 0.949 14 C -0.569 4.569 15 H 0.045 0.955 16 C 0.033 3.967 17 N -0.904 5.904 18 Si 1.061 2.939 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.289 1.289 22 C -0.030 4.030 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.153 4.153 26 C -0.124 4.124 27 C -0.130 4.130 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.408 0.592 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.270 0.730 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 -11.789 -9.955 15.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.016 4.016 3 N -0.367 5.367 4 C 0.008 3.992 5 C -0.172 4.172 6 C 0.329 3.671 7 O -0.407 6.407 8 O -0.330 6.330 9 C 0.304 3.696 10 O -0.364 6.364 11 C -0.154 4.154 12 C 0.052 3.948 13 H 0.069 0.931 14 C -0.606 4.606 15 H 0.063 0.937 16 C -0.173 4.173 17 N -0.540 5.540 18 Si 0.890 3.110 19 H -0.209 1.209 20 H -0.218 1.218 21 H -0.215 1.215 22 C -0.030 4.030 23 C -0.126 4.126 24 C -0.148 4.148 25 C -0.171 4.171 26 C -0.142 4.142 27 C -0.148 4.148 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.122 0.878 37 H 0.267 0.733 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.426 -10.002 -9.287 13.863 hybrid contribution -0.913 -0.960 -0.923 1.615 sum -3.339 -10.962 -10.210 15.348 Atomic orbital electron populations 1.22228 0.96238 1.01935 1.02669 1.21482 0.94280 0.82886 1.02934 1.48210 1.68521 1.14414 1.05588 1.21005 0.92447 1.00065 0.85660 1.21832 1.01570 1.01724 0.92043 1.23454 0.79180 0.78041 0.86437 1.90723 1.45188 1.40279 1.64517 1.84565 1.35781 1.71257 1.41361 1.20972 0.76693 0.87102 0.84802 1.90758 1.41705 1.17465 1.86473 1.21728 1.00421 1.00122 0.93139 1.17885 0.98615 0.93118 0.85192 0.93133 1.21510 0.89755 1.03274 1.46061 0.93687 1.25565 1.06081 0.92982 0.92675 1.70756 1.04907 1.39549 1.38778 0.83664 0.74853 0.76225 0.76213 1.20946 1.21755 1.21513 1.20812 0.90872 0.92517 0.98845 1.20904 0.99269 0.96275 0.96177 1.21009 0.98151 0.99970 0.95622 1.20824 0.98865 0.97629 0.99809 1.20966 1.00178 0.96306 0.96785 1.21068 0.98368 0.99965 0.95439 0.92050 0.92548 0.91783 0.91003 0.89997 0.90339 0.89049 0.86663 0.87779 0.73349 0.90261 0.91594 0.91851 0.86783 0.87464 0.87599 0.87476 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.24 37.16 0.38 -1.29 16 2 C 0.11 1.13 5.93 -4.04 -0.02 1.11 16 3 N -0.63 -9.10 2.47 -173.68 -0.43 -9.53 16 4 C 0.13 1.81 4.70 -4.04 -0.02 1.79 16 5 C -0.13 -1.62 6.13 -27.88 -0.17 -1.80 16 6 C 0.49 6.05 8.33 36.00 0.30 6.35 16 7 O -0.52 -7.83 16.74 -18.75 -0.31 -8.14 16 8 O -0.52 -5.17 13.42 -39.26 -0.53 -5.70 16 9 C 0.52 9.96 7.43 -10.98 -0.08 9.88 16 10 O -0.49 -12.02 14.60 5.55 0.08 -11.94 16 11 C -0.11 -2.14 3.49 -27.88 -0.10 -2.24 16 12 C 0.07 1.66 1.31 -92.93 -0.12 1.54 16 13 H 0.05 1.35 6.23 -51.93 -0.32 1.02 16 14 C -0.57 -15.15 6.40 -34.44 -0.22 -15.37 16 15 H 0.04 1.20 7.82 -52.49 -0.41 0.79 16 16 C 0.03 0.94 5.45 -17.82 -0.10 0.84 16 17 N -0.90 -27.47 13.63 55.43 0.76 -26.71 16 18 Si 1.06 26.07 29.91 -169.99 -5.08 20.99 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 C -0.03 -0.65 4.77 -104.62 -0.50 -1.15 16 23 C -0.11 -2.16 8.88 -39.59 -0.35 -2.51 16 24 C -0.13 -2.28 10.05 -39.59 -0.40 -2.68 16 25 C -0.15 -2.62 10.05 -39.58 -0.40 -3.02 16 26 C -0.12 -2.26 10.05 -39.59 -0.40 -2.65 16 27 C -0.13 -2.69 9.67 -39.59 -0.38 -3.07 16 28 H 0.06 0.69 7.22 -51.93 -0.37 0.31 16 29 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 32 H 0.08 0.85 6.44 -51.93 -0.33 0.51 16 33 H 0.08 0.91 8.03 -51.93 -0.42 0.50 16 34 H 0.09 1.53 7.38 -51.93 -0.38 1.14 16 35 H 0.12 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.41 2.26 9.10 45.56 0.41 2.67 16 38 H 0.08 1.38 7.13 -51.93 -0.37 1.01 16 39 H 0.07 1.09 7.18 -51.93 -0.37 0.72 16 40 H 0.27 8.12 6.68 -40.82 -0.27 7.84 16 41 H 0.11 2.20 7.80 -52.48 -0.41 1.79 16 42 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 43 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 44 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 45 H 0.11 2.25 7.95 -52.49 -0.42 1.84 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -35.10 378.74 -8.24 -43.34 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.85 Total: 6.25 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -2.58 Total: -14.26 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.33 Total: -36.25 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.76 Total: -25.78 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.08 Total: 20.99 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.10 -8.24 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610000622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.541 kcal (2) G-P(sol) polarization free energy of solvation -35.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds