Wall clock time and date at job start Tue Mar 31 2020 12:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46877 * 2 1 4 4 C 1.46506 * 120.00283 * 270.00009 * 3 2 1 5 5 C 1.52999 * 109.47029 * 270.00555 * 4 3 2 6 6 C 1.50697 * 109.47065 * 179.97438 * 5 4 3 7 7 O 1.20831 * 120.00078 * 359.97438 * 6 5 4 8 8 O 1.34229 * 119.99888 * 179.97438 * 6 5 4 9 9 C 1.34773 * 120.00010 * 90.00438 * 3 2 1 10 10 O 1.21284 * 120.00085 * 180.02562 * 9 3 2 11 11 C 1.50706 * 119.99984 * 359.97438 * 9 3 2 12 12 C 1.52994 * 109.46995 * 180.02562 * 11 9 3 13 13 H 1.08997 * 109.47639 * 54.05331 * 12 11 9 14 14 C 1.50698 * 109.46998 * 294.05407 * 12 11 9 15 15 H 1.08002 * 120.00397 * 330.08382 * 14 12 11 16 16 C 1.37877 * 119.99983 * 150.08385 * 14 12 11 17 17 N 1.31513 * 120.00147 * 6.55933 * 16 14 12 18 18 Si 1.86806 * 120.00054 * 186.55449 * 16 14 12 19 19 H 1.48505 * 109.47142 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.47340 * 300.00345 * 18 16 14 21 21 H 1.48505 * 109.46728 * 60.00313 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38238 * 119.99674 * 0.39266 * 24 23 22 26 26 C 1.38237 * 119.99909 * 359.86442 * 25 24 23 27 27 C 1.38229 * 119.99861 * 359.94762 * 26 25 24 28 28 H 1.08998 * 109.47538 * 299.99944 * 1 2 3 29 29 H 1.09008 * 109.47339 * 59.99937 * 1 2 3 30 30 H 1.09001 * 109.47169 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46777 * 240.00583 * 2 1 3 32 32 H 1.08993 * 109.46874 * 120.00081 * 2 1 3 33 33 H 1.09004 * 109.46669 * 29.99915 * 4 3 2 34 34 H 1.08996 * 109.47063 * 149.99789 * 4 3 2 35 35 H 1.09003 * 109.47191 * 299.99676 * 5 4 3 36 36 H 1.08998 * 109.47332 * 59.99830 * 5 4 3 37 37 H 0.96703 * 116.99682 * 179.97438 * 8 6 5 38 38 H 1.08997 * 109.46866 * 60.00030 * 11 9 3 39 39 H 1.09004 * 109.46662 * 299.99914 * 11 9 3 40 40 H 0.96997 * 120.00185 * 354.72930 * 17 16 14 41 41 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 42 42 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 43 43 H 1.08006 * 119.99774 * 179.83158 * 25 24 23 44 44 H 1.07995 * 119.99599 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8315 -1.7105 6 6 3.9584 2.5414 -3.0158 7 8 3.0723 3.1744 -3.5394 8 8 5.1663 2.4706 -3.5968 9 6 2.2430 2.0165 1.1672 10 8 2.6467 3.1602 1.1672 11 6 1.9914 1.3063 2.4723 12 6 2.3223 2.2438 3.6352 13 1 1.7695 3.1760 3.5191 14 6 3.8011 2.5341 3.6411 15 1 4.4975 1.7979 3.2677 16 6 4.2650 3.7396 4.1232 17 7 3.4336 4.5827 4.6956 18 14 6.0745 4.1754 3.9635 19 1 6.3150 5.5157 4.5562 20 1 6.8924 3.1639 4.6798 21 1 6.4545 4.1930 2.5280 22 6 1.9340 1.5880 4.9353 23 6 2.5727 0.4324 5.3444 24 6 2.2192 -0.1670 6.5387 25 6 1.2213 0.3848 7.3202 26 6 0.5789 1.5375 6.9085 27 6 0.9351 2.1390 5.7160 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5816 1.6878 -2.0284 34 1 2.0954 3.1411 -1.1384 35 1 4.3883 2.2156 -0.9508 36 1 3.8744 0.7623 -1.8408 37 1 5.2793 2.9421 -4.4336 38 1 2.6212 0.4186 2.5301 39 1 0.9432 1.0125 2.5299 40 1 2.4828 4.3915 4.7107 41 1 3.3498 -0.0008 4.7320 42 1 2.7208 -1.0678 6.8602 43 1 0.9432 -0.0850 8.2521 44 1 -0.2010 1.9683 7.5189 45 1 0.4335 3.0398 5.3946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610000622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:07 Heat of formation + Delta-G solvation = -135.873243 kcal Electronic energy + Delta-G solvation = -27220.806321 eV Core-core repulsion = 23394.850122 eV Total energy + Delta-G solvation = -3825.956199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.47048 -40.87243 -39.87193 -37.39658 -36.99193 -36.07691 -33.77724 -32.99120 -31.59659 -30.84876 -30.25974 -27.35588 -25.81643 -24.61841 -23.95155 -23.16859 -22.22512 -21.53042 -19.87327 -19.13247 -18.67324 -18.17768 -17.91774 -17.32217 -16.95638 -16.72098 -16.21117 -15.84523 -15.64743 -15.60376 -14.86460 -14.72532 -14.68690 -14.38157 -14.18448 -14.01974 -13.99498 -13.66698 -13.45875 -13.17842 -13.09429 -12.79344 -12.65792 -12.60614 -12.56557 -12.18062 -12.09817 -11.95785 -11.86905 -11.74112 -11.70036 -11.43104 -10.69275 -10.60461 -10.30303 -9.68667 -9.63019 -9.25635 -8.43609 -6.09543 0.68945 0.75284 1.13247 1.47635 1.58703 1.72911 1.74584 1.90129 2.42598 2.61748 3.11834 3.39308 3.71770 3.74734 4.05320 4.11185 4.14905 4.28913 4.29915 4.30880 4.37408 4.46711 4.46815 4.50535 4.61423 4.64193 4.73876 4.82961 4.86489 4.87045 4.94687 4.99788 5.13802 5.24501 5.40284 5.41810 5.44070 5.55063 5.68897 5.75843 5.83739 5.95726 6.25214 6.31878 6.39972 6.50294 6.79095 6.93858 7.44822 7.66701 8.96528 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.004338 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.744215 B = 6453.073007 C = 8105.901140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 N -0.617 5.617 4 C 0.133 3.867 5 C -0.126 4.126 6 C 0.494 3.506 7 O -0.550 6.550 8 O -0.512 6.512 9 C 0.512 3.488 10 O -0.559 6.559 11 C -0.104 4.104 12 C 0.072 3.928 13 H 0.003 0.997 14 C -0.554 4.554 15 H 0.043 0.957 16 C -0.026 4.026 17 N -0.944 5.944 18 Si 1.097 2.903 19 H -0.292 1.292 20 H -0.265 1.265 21 H -0.283 1.283 22 C -0.053 4.053 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.145 4.145 26 C -0.126 4.126 27 C -0.155 4.155 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.141 0.859 37 H 0.428 0.572 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.256 0.744 41 H 0.116 0.884 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.133 0.867 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.165 -15.752 -10.010 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.023 4.023 3 N -0.352 5.352 4 C 0.009 3.991 5 C -0.165 4.165 6 C 0.338 3.662 7 O -0.441 6.441 8 O -0.325 6.325 9 C 0.301 3.699 10 O -0.435 6.435 11 C -0.144 4.144 12 C 0.053 3.947 13 H 0.021 0.979 14 C -0.592 4.592 15 H 0.061 0.939 16 C -0.224 4.224 17 N -0.582 5.582 18 Si 0.922 3.078 19 H -0.218 1.218 20 H -0.191 1.191 21 H -0.210 1.210 22 C -0.054 4.054 23 C -0.139 4.139 24 C -0.141 4.141 25 C -0.163 4.163 26 C -0.144 4.144 27 C -0.173 4.173 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.124 0.876 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.159 0.841 37 H 0.290 0.710 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.134 0.866 42 H 0.162 0.838 43 H 0.164 0.836 44 H 0.151 0.849 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.103 -14.046 -9.389 17.025 hybrid contribution -1.095 0.152 -0.970 1.471 sum -3.198 -13.894 -10.359 17.623 Atomic orbital electron populations 1.22201 0.95440 1.03445 1.01646 1.21877 0.94922 0.80374 1.05094 1.48153 1.66857 1.15783 1.04400 1.21018 0.94389 0.97990 0.85688 1.21718 0.99641 1.03821 0.91338 1.23361 0.79356 0.77256 0.86250 1.90720 1.46345 1.41584 1.65466 1.84510 1.34192 1.71250 1.42580 1.21106 0.76073 0.86385 0.86322 1.90737 1.45134 1.20146 1.87520 1.21584 1.02057 0.99418 0.91359 1.17715 0.96153 0.92524 0.88286 0.97907 1.21787 0.91529 1.02436 1.43475 0.93895 1.26724 1.08933 0.93752 0.93004 1.70850 1.04444 1.40841 1.42094 0.83205 0.71845 0.76223 0.76577 1.21804 1.19056 1.20970 1.20600 0.92622 0.94045 0.98087 1.21003 0.99421 0.95925 0.97599 1.21415 0.97775 1.00658 0.94264 1.21305 0.97574 0.96600 1.00802 1.21284 1.00689 0.96651 0.95753 1.21115 0.99169 1.00012 0.97029 0.94185 0.92521 0.88962 0.87314 0.89385 0.87573 0.93008 0.89071 0.84148 0.70959 0.88279 0.89468 0.93289 0.86553 0.83817 0.83607 0.84919 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 10.24 71.98 0.74 -2.13 16 2 C 0.10 1.79 5.93 86.38 0.51 2.30 16 3 N -0.62 -17.46 2.47 -821.80 -2.03 -19.50 16 4 C 0.13 3.60 4.70 86.38 0.41 4.01 16 5 C -0.13 -2.97 6.13 29.85 0.18 -2.79 16 6 C 0.49 11.82 8.33 71.23 0.59 12.41 16 7 O -0.55 -16.45 16.74 21.95 0.37 -16.09 16 8 O -0.51 -9.29 13.42 -51.41 -0.69 -9.98 16 9 C 0.51 20.44 7.43 87.66 0.65 21.09 16 10 O -0.56 -29.15 14.60 -3.04 -0.04 -29.19 16 11 C -0.10 -3.98 3.49 29.85 0.10 -3.87 16 12 C 0.07 3.56 1.31 -12.29 -0.02 3.54 16 13 H 0.00 0.16 6.23 -2.39 -0.01 0.14 16 14 C -0.55 -30.58 6.40 25.60 0.16 -30.42 16 15 H 0.04 2.32 7.82 -2.91 -0.02 2.30 16 16 C -0.03 -1.54 5.45 84.65 0.46 -1.08 16 17 N -0.94 -60.69 13.63 21.45 0.29 -60.40 16 18 Si 1.10 53.97 29.91 68.60 2.05 56.03 16 19 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 22 C -0.05 -2.35 4.77 -19.87 -0.09 -2.44 16 23 C -0.12 -4.68 8.88 22.27 0.20 -4.48 16 24 C -0.12 -3.92 10.05 22.27 0.22 -3.70 16 25 C -0.15 -4.42 10.05 22.27 0.22 -4.20 16 26 C -0.13 -4.37 10.05 22.27 0.22 -4.15 16 27 C -0.15 -6.59 9.67 22.27 0.22 -6.38 16 28 H 0.04 0.85 7.22 -2.39 -0.02 0.83 16 29 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 1.26 8.07 -2.39 -0.02 1.24 16 32 H 0.09 1.54 6.44 -2.39 -0.02 1.52 16 33 H 0.11 2.29 8.03 -2.38 -0.02 2.27 16 34 H 0.05 1.84 7.38 -2.39 -0.02 1.82 16 35 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.43 3.92 9.10 -74.06 -0.67 3.24 16 38 H 0.10 3.34 7.13 -2.39 -0.02 3.33 16 39 H 0.09 2.91 7.18 -2.39 -0.02 2.89 16 40 H 0.26 16.67 6.68 -92.71 -0.62 16.05 16 41 H 0.12 4.32 7.80 -2.91 -0.02 4.30 16 42 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 43 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 44 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 45 H 0.09 4.10 7.95 -2.91 -0.02 4.07 16 Total: -1.00 -82.99 378.74 5.20 -77.79 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.47 Total: 23.61 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 4.79 Total: -22.27 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -1.74 Total: -79.90 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -0.37 Total: -55.26 kcal Atomic # 14 Polarization: 53.97 SS G_CDS: 2.05 Total: 56.03 kcal Total: -82.99 5.20 -77.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610000622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.083 kcal (2) G-P(sol) polarization free energy of solvation -82.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds