Wall clock time and date at job start Tue Mar 31 2020 12:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46945 * 2 1 4 4 C 1.42895 * 113.99852 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.47256 * 179.97438 * 4 3 2 6 6 C 1.50703 * 115.54560 * 304.88553 * 5 4 3 7 7 O 1.21284 * 119.99722 * 124.40041 * 6 5 4 8 8 N 1.34774 * 119.99950 * 304.39359 * 6 5 4 9 9 C 1.46494 * 119.99834 * 174.74498 * 8 6 5 10 10 C 1.50703 * 109.47513 * 180.02562 * 9 8 6 11 11 C 1.38326 * 119.96392 * 269.72992 * 10 9 8 12 12 C 1.38277 * 120.13508 * 179.76214 * 11 10 9 13 13 C 1.38124 * 120.07137 * 0.50772 * 12 11 10 14 14 C 1.38852 * 119.92628 * 359.74652 * 13 12 11 15 15 O 1.35759 * 120.06710 * 179.97438 * 14 13 12 16 16 C 1.34826 * 116.99813 * 354.52373 * 15 14 13 17 17 H 1.07999 * 120.00435 * 5.09193 * 16 15 14 18 18 C 1.38655 * 120.00181 * 185.09584 * 16 15 14 19 19 N 1.31555 * 120.00646 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99739 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47173 * 89.99872 * 20 18 16 22 22 H 1.48504 * 109.47141 * 209.99967 * 20 18 16 23 23 H 1.48499 * 109.47338 * 330.00111 * 20 18 16 24 24 C 1.38074 * 119.96667 * 89.99740 * 10 9 8 25 25 C 1.52998 * 117.49893 * 90.55012 * 5 4 3 26 26 C 1.52997 * 117.49977 * 159.21187 * 5 4 3 27 27 H 1.09003 * 109.47040 * 60.00368 * 1 2 3 28 28 H 1.09002 * 109.47217 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47162 * 300.00486 * 1 2 3 30 30 H 1.08995 * 109.46964 * 239.99977 * 2 1 3 31 31 H 1.08995 * 109.46900 * 119.99275 * 2 1 3 32 32 H 1.08996 * 109.47429 * 59.99812 * 4 3 2 33 33 H 1.09003 * 109.47381 * 299.99290 * 4 3 2 34 34 H 0.97001 * 120.00000 * 355.03016 * 8 6 5 35 35 H 1.09001 * 109.47795 * 300.00321 * 9 8 6 36 36 H 1.09008 * 109.47196 * 60.00714 * 9 8 6 37 37 H 1.07994 * 119.93095 * 359.97438 * 11 10 9 38 38 H 1.08007 * 119.96459 * 180.25336 * 12 11 10 39 39 H 1.08000 * 120.03550 * 179.77178 * 13 12 11 40 40 H 0.96994 * 120.00303 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.03198 * 359.96483 * 24 10 9 42 42 H 1.08993 * 117.49699 * 215.00115 * 25 5 4 43 43 H 1.09000 * 117.49644 * 0.03258 * 25 5 4 44 44 H 1.09005 * 117.49963 * 359.97438 * 26 5 4 45 45 H 1.08999 * 117.49378 * 144.97174 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9385 -0.0001 6 6 3.2421 3.7663 -1.1162 7 8 2.5996 4.7626 -0.8603 8 7 3.4344 3.3994 -2.3987 9 6 2.7731 4.1362 -3.4784 10 6 3.1502 3.5294 -4.8053 11 6 4.2601 3.9947 -5.4873 12 6 4.6122 3.4372 -6.7027 13 6 3.8502 2.4205 -7.2445 14 6 2.7325 1.9548 -6.5648 15 8 1.9812 0.9560 -7.0949 16 6 2.3066 0.5373 -8.3345 17 1 3.1817 0.9352 -8.8266 18 6 1.5176 -0.4041 -8.9777 19 7 1.8346 -0.8124 -10.1874 20 14 0.0041 -1.0928 -8.1263 21 1 -1.1736 -0.2486 -8.4508 22 1 -0.2382 -2.4813 -8.5941 23 1 0.2210 -1.0962 -6.6573 24 6 2.3845 2.5133 -5.3416 25 6 4.0195 3.6185 1.3566 26 6 5.2331 3.2942 0.4820 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.8340 0.9765 -0.8891 33 1 3.8332 0.9769 0.8909 34 1 4.0075 2.6449 -2.6066 35 1 1.6924 4.0802 -3.3478 36 1 3.0886 5.1793 -3.4528 37 1 4.8547 4.7928 -5.0681 38 1 5.4817 3.7998 -7.2309 39 1 4.1236 1.9879 -8.1956 40 1 1.2828 -1.4712 -10.6371 41 1 1.5159 2.1530 -4.8104 42 1 3.7255 4.6645 1.4419 43 1 3.8666 3.0125 2.2497 44 1 5.8782 2.4751 0.8001 45 1 5.7376 4.1267 -0.0085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645758173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:00 Heat of formation + Delta-G solvation = -63.327546 kcal Electronic energy + Delta-G solvation = -26337.700601 eV Core-core repulsion = 22514.890220 eV Total energy + Delta-G solvation = -3822.810382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.29820 -39.30140 -38.14868 -37.10324 -36.39737 -34.52400 -32.45929 -31.52952 -30.89348 -29.44312 -27.45430 -26.08376 -25.16928 -23.15861 -22.85107 -22.65454 -21.82502 -20.71820 -19.64777 -17.89227 -17.62226 -17.08747 -16.56436 -16.29315 -15.77553 -15.60854 -15.32056 -15.03167 -14.65675 -14.31608 -13.97275 -13.87649 -13.60366 -13.58086 -13.42726 -12.77853 -12.65371 -12.59039 -12.29555 -12.21579 -12.00949 -11.85160 -11.71849 -11.47163 -11.40599 -10.96625 -10.90321 -10.88764 -10.78205 -10.50854 -10.22586 -9.88464 -9.72726 -9.47873 -8.99091 -8.94360 -8.34240 -7.49708 -6.48068 -4.15475 1.79878 2.13696 2.54265 3.09786 3.16970 3.21683 3.31339 3.35352 3.69081 4.17985 4.35806 4.38851 4.55489 4.58064 4.65152 4.77488 4.86365 4.97263 5.01929 5.11679 5.14149 5.19056 5.24645 5.28333 5.41381 5.47886 5.56261 5.60803 5.64296 5.74249 5.74973 5.84208 5.87509 5.98062 5.99967 6.14093 6.41001 6.46986 6.66361 6.97150 6.98724 7.10330 7.18958 7.46902 7.58072 7.71465 7.95826 8.26027 8.86910 9.48028 10.59414 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.003437 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.132059 B = 8144.916020 C = 9849.077937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.105 3.895 5 C -0.162 4.162 6 C 0.559 3.441 7 O -0.540 6.540 8 N -0.715 5.715 9 C 0.169 3.831 10 C -0.074 4.074 11 C -0.186 4.186 12 C -0.077 4.077 13 C -0.213 4.213 14 C 0.156 3.844 15 O -0.216 6.216 16 C -0.391 4.391 17 H 0.107 0.893 18 C 0.065 3.935 19 N -0.878 5.878 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.260 1.260 24 C -0.171 4.171 25 C -0.137 4.137 26 C -0.149 4.149 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.402 0.598 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.280 0.720 41 H 0.118 0.882 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 3.547 20.402 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.300 6.300 4 C 0.028 3.972 5 C -0.166 4.166 6 C 0.344 3.656 7 O -0.417 6.417 8 N -0.366 5.366 9 C 0.046 3.954 10 C -0.075 4.075 11 C -0.205 4.205 12 C -0.096 4.096 13 C -0.232 4.232 14 C 0.104 3.896 15 O -0.121 6.121 16 C -0.467 4.467 17 H 0.124 0.876 18 C -0.139 4.139 19 N -0.516 5.516 20 Si 0.730 3.270 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.184 1.184 24 C -0.190 4.190 25 C -0.174 4.174 26 C -0.186 4.186 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.236 0.764 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.152 0.848 40 H 0.090 0.910 41 H 0.136 0.864 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.677 4.141 20.456 21.389 hybrid contribution -0.125 -1.086 -0.226 1.116 sum 4.552 3.056 20.230 20.960 Atomic orbital electron populations 1.21735 0.93565 1.02276 1.03309 1.22481 0.95887 0.83458 1.00083 1.87971 1.20054 1.26575 1.95377 1.21833 0.82431 0.92105 1.00840 1.21375 1.02188 0.95633 0.97363 1.19206 0.79509 0.84184 0.82665 1.90678 1.40641 1.26615 1.83769 1.45981 1.50200 1.35141 1.05252 1.20147 0.97456 0.95133 0.82665 1.19274 0.96136 0.96907 0.95170 1.20552 0.99191 1.03577 0.97212 1.20804 0.98336 0.95428 0.95006 1.21362 0.97653 1.01293 1.02883 1.19054 0.90483 0.87695 0.92338 1.83578 1.51897 1.44551 1.32068 1.20761 1.13046 1.24222 0.88646 0.87594 1.24462 0.98588 0.95907 0.94929 1.69638 1.39422 1.30679 1.11818 0.86194 0.81902 0.78088 0.80809 1.19793 1.20724 1.18378 1.20087 1.02654 1.00041 0.96253 1.23013 0.99741 1.02499 0.92186 1.23090 0.89146 1.03716 1.02651 0.91575 0.91043 0.91959 0.93044 0.93528 0.92351 0.92366 0.76383 0.90916 0.90850 0.87289 0.86971 0.84836 0.90965 0.86407 0.87408 0.87865 0.87600 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.16 0.38 -1.07 16 2 C 0.06 0.57 6.66 37.16 0.25 0.82 16 3 O -0.38 -4.72 10.08 -35.23 -0.36 -5.07 16 4 C 0.10 1.03 5.80 37.16 0.22 1.24 16 5 C -0.16 -1.72 2.24 -155.66 -0.35 -2.07 16 6 C 0.56 7.85 6.90 -10.99 -0.08 7.77 16 7 O -0.54 -9.53 16.48 5.55 0.09 -9.44 16 8 N -0.72 -9.42 5.51 -61.47 -0.34 -9.76 16 9 C 0.17 2.44 5.80 -5.20 -0.03 2.41 16 10 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 11 C -0.19 -2.91 9.70 -39.53 -0.38 -3.29 16 12 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 13 C -0.21 -4.36 9.17 -39.40 -0.36 -4.72 16 14 C 0.16 3.46 6.65 -39.11 -0.26 3.20 16 15 O -0.22 -5.53 8.59 0.03 0.00 -5.53 16 16 C -0.39 -10.75 9.95 30.89 0.31 -10.44 16 17 H 0.11 2.96 5.44 -52.49 -0.29 2.68 16 18 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 19 N -0.88 -24.91 13.96 55.48 0.77 -24.13 16 20 Si 0.90 21.28 28.62 -169.99 -4.86 16.41 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 24 C -0.17 -3.23 9.64 -39.40 -0.38 -3.61 16 25 C -0.14 -1.26 9.73 -26.69 -0.26 -1.52 16 26 C -0.15 -1.14 9.96 -26.69 -0.27 -1.41 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.40 4.72 8.47 -40.82 -0.35 4.38 16 35 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 36 H 0.07 1.03 8.08 -51.92 -0.42 0.61 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 39 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 40 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.12 2.17 8.06 -52.48 -0.42 1.74 16 42 H 0.11 1.12 7.83 -51.93 -0.41 0.72 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 385.22 15.07 5.81 5.81 Total: -1.00 -31.57 385.22 -7.94 -39.51 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -6.80 Total: 6.66 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -2.26 Total: -14.46 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.44 Total: -33.89 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.26 Total: -20.04 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.86 Total: 16.41 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.57 -7.94 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645758173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.815 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds