Wall clock time and date at job start Tue Mar 31 2020 12:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00365 * 2 1 4 4 C 1.53006 * 109.46964 * 275.00504 * 3 2 1 5 5 H 1.08993 * 109.46765 * 304.99233 * 4 3 2 6 6 C 1.52999 * 109.47000 * 64.99819 * 4 3 2 7 7 C 1.53006 * 109.46626 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47127 * 299.99539 * 7 6 4 9 9 C 1.53002 * 109.46817 * 60.00361 * 8 7 6 10 10 C 1.52996 * 109.46972 * 299.99733 * 9 8 7 11 11 H 1.09000 * 109.47380 * 299.99696 * 10 9 8 12 12 O 1.42909 * 109.47119 * 180.02562 * 10 9 8 13 13 S 1.65598 * 120.00061 * 180.02562 * 2 1 3 14 14 O 1.42100 * 104.28207 * 26.06738 * 13 2 1 15 15 O 1.42101 * 104.28347 * 153.92772 * 13 2 1 16 16 C 1.81404 * 104.44980 * 269.99828 * 13 2 1 17 17 C 1.52997 * 109.47387 * 180.02562 * 16 13 2 18 18 C 1.52998 * 109.47309 * 179.97438 * 17 16 13 19 19 C 1.50700 * 109.47358 * 179.97438 * 18 17 16 20 20 H 1.08011 * 119.99642 * 0.02562 * 19 18 17 21 21 C 1.37869 * 120.00252 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00419 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00181 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47287 * 90.00082 * 23 21 19 25 25 H 1.48503 * 109.47296 * 210.00209 * 23 21 19 26 26 H 1.48494 * 109.47040 * 330.00178 * 23 21 19 27 27 H 1.08994 * 109.47531 * 90.00365 * 1 2 3 28 28 H 1.09003 * 109.46711 * 209.99945 * 1 2 3 29 29 H 1.09000 * 109.46794 * 329.99837 * 1 2 3 30 30 H 1.08997 * 109.47651 * 155.00062 * 3 2 1 31 31 H 1.09006 * 109.46629 * 34.99957 * 3 2 1 32 32 H 1.08993 * 109.47839 * 60.00073 * 6 4 3 33 33 H 1.09000 * 109.47160 * 299.99635 * 6 4 3 34 34 H 1.09001 * 109.46801 * 59.99811 * 7 6 4 35 35 H 1.09001 * 109.46998 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 37 37 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 38 38 H 1.08996 * 109.47407 * 60.00219 * 9 8 7 39 39 H 1.09000 * 109.46986 * 179.97438 * 9 8 7 40 40 H 0.96701 * 113.99655 * 59.99717 * 12 10 9 41 41 H 1.09002 * 109.46895 * 299.99524 * 16 13 2 42 42 H 1.08998 * 109.46946 * 59.99845 * 16 13 2 43 43 H 1.09006 * 109.47347 * 299.99882 * 17 16 13 44 44 H 1.09004 * 109.46958 * 59.99607 * 17 16 13 45 45 H 1.08998 * 109.47046 * 300.00043 * 18 17 16 46 46 H 1.08998 * 109.46850 * 59.99915 * 18 17 16 47 47 H 0.96998 * 120.01024 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7732 -1.4371 5 1 2.8118 1.0011 -2.0474 6 6 0.9616 2.1037 -2.0044 7 6 1.1077 2.6077 -3.4417 8 6 1.9786 3.8656 -3.4551 9 6 3.3605 3.5350 -2.8876 10 6 3.2145 3.0311 -1.4504 11 1 2.7465 3.8036 -0.8403 12 8 4.5053 2.7229 -0.9202 13 16 2.2930 -1.4341 -0.0006 14 8 1.3970 -2.3559 -0.6062 15 8 3.5395 -1.1190 -0.6057 16 6 2.5194 -1.8269 1.7558 17 6 3.2820 -3.1465 1.8892 18 6 3.4735 -3.4774 3.3707 19 6 4.2241 -4.7776 3.5021 20 1 4.5340 -5.3140 2.6173 21 6 4.5161 -5.2818 4.7516 22 7 4.1393 -4.6284 5.8289 23 14 5.4472 -6.8930 4.9145 24 1 6.9062 -6.6196 4.9569 25 1 5.0354 -7.5784 6.1658 26 1 5.1402 -7.7620 3.7501 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 3.1858 1.1177 0.4343 31 1 1.6501 2.0042 0.5895 32 1 0.4934 2.8759 -1.3941 33 1 0.3413 1.2075 -1.9953 34 1 1.5758 1.8351 -4.0518 35 1 0.1232 2.8428 -3.8461 36 1 2.0823 4.2248 -4.4789 37 1 1.5105 4.6380 -2.8449 38 1 3.8286 2.7626 -3.4977 39 1 3.9812 4.4310 -2.8975 40 1 5.1115 3.4760 -0.8983 41 1 3.0867 -1.0297 2.2362 42 1 1.5452 -1.9197 2.2358 43 1 2.7151 -3.9440 1.4088 44 1 4.2562 -3.0533 1.4092 45 1 4.0406 -2.6799 3.8507 46 1 2.4994 -3.5705 3.8510 47 1 4.3444 -4.9833 6.7081 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180007708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:02 Heat of formation + Delta-G solvation = -152.341543 kcal Electronic energy + Delta-G solvation = -25968.920428 eV Core-core repulsion = 22277.694062 eV Total energy + Delta-G solvation = -3691.226367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.67481 -36.85416 -36.49107 -35.65818 -35.50636 -34.62211 -32.15484 -31.48128 -29.98118 -27.77761 -27.38193 -24.54195 -23.59350 -22.84198 -21.59069 -20.50628 -20.12594 -18.61972 -17.51108 -17.27572 -16.66916 -16.32033 -16.03809 -15.43376 -15.13066 -14.70586 -14.47447 -14.21328 -14.15340 -13.97924 -13.72369 -13.36391 -13.23548 -12.70291 -12.54296 -12.24710 -12.20130 -11.99413 -11.85639 -11.72525 -11.70019 -11.56780 -11.49292 -11.25793 -11.12819 -10.99419 -10.90056 -10.81419 -10.61500 -10.41570 -10.37433 -10.07075 -9.91637 -9.45018 -9.18472 -8.83458 -8.38613 -6.03482 -4.06432 0.51205 2.80982 3.32183 3.38035 3.42412 3.95452 4.07571 4.30934 4.38105 4.43843 4.45296 4.60902 4.68146 4.85569 4.91259 5.06950 5.08445 5.17548 5.18192 5.21902 5.23701 5.32774 5.35869 5.36796 5.49294 5.57918 5.61255 5.71059 5.78167 5.82548 5.83761 5.93252 5.94703 5.98632 6.11401 6.22016 6.30603 6.49428 6.56655 6.90932 7.50672 7.59732 7.69998 7.94724 8.35478 8.99827 9.58146 11.07815 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.025602 B = 0.002727 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.406966 B =10263.812792 C =10696.185018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.007 6.007 3 C 0.133 3.867 4 C -0.100 4.100 5 H 0.088 0.912 6 C -0.119 4.119 7 C -0.124 4.124 8 C -0.116 4.116 9 C -0.152 4.152 10 C 0.113 3.887 11 H 0.054 0.946 12 O -0.559 6.559 13 S 2.595 3.405 14 O -0.962 6.962 15 O -0.951 6.951 16 C -0.610 4.610 17 C -0.106 4.106 18 C 0.031 3.969 19 C -0.525 4.525 20 H 0.058 0.942 21 C 0.057 3.943 22 N -0.896 5.896 23 Si 0.894 3.106 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.375 0.625 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.021 0.979 46 H 0.020 0.980 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.826 20.974 -15.511 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.843 5.843 3 C 0.008 3.992 4 C -0.120 4.120 5 H 0.106 0.894 6 C -0.156 4.156 7 C -0.161 4.161 8 C -0.154 4.154 9 C -0.190 4.190 10 C 0.053 3.947 11 H 0.072 0.928 12 O -0.364 6.364 13 S 2.691 3.309 14 O -0.952 6.952 15 O -0.942 6.942 16 C -0.742 4.742 17 C -0.145 4.145 18 C -0.008 4.008 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.144 4.144 22 N -0.535 5.535 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.221 0.779 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.869 19.926 -16.052 26.770 hybrid contribution 0.600 -0.001 0.839 1.032 sum -7.269 19.925 -15.212 26.101 Atomic orbital electron populations 1.21555 0.78885 1.02869 1.01962 1.57632 1.14866 1.21625 1.90178 1.21276 0.96994 0.84844 0.96131 1.21613 0.95134 0.97197 0.98074 0.89370 1.21762 0.96337 1.01743 0.95787 1.21591 0.99770 0.97587 0.97190 1.21479 0.95150 0.97876 1.00881 1.22273 0.97783 1.01440 0.97506 1.21735 0.84172 0.96098 0.92705 0.92814 1.86643 1.24131 1.39887 1.85715 1.05617 0.73880 0.72784 0.78587 1.93556 1.64886 1.62292 1.74491 1.93593 1.43716 1.82627 1.74232 1.30592 1.10451 1.09430 1.23704 1.21494 0.98181 0.90637 1.04191 1.19061 0.97379 0.96753 0.87571 1.21263 1.36126 1.06595 0.92380 0.92367 1.25019 0.95929 0.97559 0.95889 1.69954 1.46755 1.39065 0.97732 0.86555 0.80111 0.83574 0.77573 1.20553 1.21178 1.19740 0.92351 0.91068 0.91180 0.88940 0.90769 0.91846 0.90347 0.91764 0.91817 0.91883 0.91963 0.90935 0.91805 0.77859 0.85504 0.85634 0.91684 0.91589 0.96112 0.96156 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 9.01 59.85 0.54 1.40 16 2 N -1.01 -11.89 3.02 -121.76 -0.37 -12.26 16 3 C 0.13 1.44 4.72 -4.04 -0.02 1.42 16 4 C -0.10 -1.04 2.14 -90.62 -0.19 -1.24 16 5 H 0.09 1.18 7.91 -51.93 -0.41 0.77 16 6 C -0.12 -0.97 4.72 -26.73 -0.13 -1.10 16 7 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 8 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 9 C -0.15 -1.14 5.54 -26.73 -0.15 -1.29 16 10 C 0.11 0.99 2.90 -26.73 -0.08 0.91 16 11 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 12 O -0.56 -5.74 12.56 -35.23 -0.44 -6.19 16 13 S 2.59 40.93 5.32 -107.50 -0.57 40.36 16 14 O -0.96 -17.53 17.09 -57.54 -0.98 -18.51 16 15 O -0.95 -17.66 16.76 -57.54 -0.96 -18.62 16 16 C -0.61 -9.97 6.18 37.16 0.23 -9.74 16 17 C -0.11 -2.23 5.16 -26.73 -0.14 -2.37 16 18 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 19 C -0.53 -15.07 9.11 -34.44 -0.31 -15.39 16 20 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 23 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 27 H 0.06 0.51 6.22 -51.93 -0.32 0.19 16 28 H 0.07 0.66 7.79 -51.93 -0.40 0.25 16 29 H 0.07 0.47 7.94 -51.93 -0.41 0.06 16 30 H 0.09 1.13 7.00 -51.93 -0.36 0.77 16 31 H 0.07 0.61 7.96 -51.93 -0.41 0.20 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.68 5.09 -51.93 -0.26 0.41 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.37 2.18 9.08 45.56 0.41 2.59 16 41 H 0.13 1.89 8.14 -51.92 -0.42 1.46 16 42 H 0.13 1.83 8.14 -51.92 -0.42 1.40 16 43 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -36.01 379.70 -10.33 -46.34 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.64 Total: -0.30 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -0.80 Total: -27.18 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.37 Total: -38.45 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -2.39 Total: -43.32 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 40.93 SS G_CDS: -0.57 Total: 40.36 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.01 -10.33 -46.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180007708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.000 kcal (2) G-P(sol) polarization free energy of solvation -36.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds