Wall clock time and date at job start Tue Mar 31 2020 12:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00365 * 2 1 4 4 C 1.53006 * 109.46964 * 275.00504 * 3 2 1 5 5 H 1.08993 * 109.46765 * 304.99233 * 4 3 2 6 6 C 1.52999 * 109.47000 * 64.99819 * 4 3 2 7 7 C 1.53006 * 109.46626 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47127 * 299.99539 * 7 6 4 9 9 C 1.53002 * 109.46817 * 60.00361 * 8 7 6 10 10 C 1.52996 * 109.46972 * 299.99733 * 9 8 7 11 11 H 1.09000 * 109.47380 * 299.99696 * 10 9 8 12 12 O 1.42909 * 109.47119 * 180.02562 * 10 9 8 13 13 S 1.65598 * 120.00061 * 180.02562 * 2 1 3 14 14 O 1.42100 * 104.28207 * 26.06738 * 13 2 1 15 15 O 1.42101 * 104.28347 * 153.92772 * 13 2 1 16 16 C 1.81404 * 104.44980 * 269.99828 * 13 2 1 17 17 C 1.52997 * 109.47387 * 180.02562 * 16 13 2 18 18 C 1.52998 * 109.47309 * 179.97438 * 17 16 13 19 19 C 1.50700 * 109.47358 * 179.97438 * 18 17 16 20 20 H 1.08011 * 119.99642 * 0.02562 * 19 18 17 21 21 C 1.37869 * 120.00252 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00419 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00181 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47287 * 90.00082 * 23 21 19 25 25 H 1.48503 * 109.47296 * 210.00209 * 23 21 19 26 26 H 1.48494 * 109.47040 * 330.00178 * 23 21 19 27 27 H 1.08994 * 109.47531 * 90.00365 * 1 2 3 28 28 H 1.09003 * 109.46711 * 209.99945 * 1 2 3 29 29 H 1.09000 * 109.46794 * 329.99837 * 1 2 3 30 30 H 1.08997 * 109.47651 * 155.00062 * 3 2 1 31 31 H 1.09006 * 109.46629 * 34.99957 * 3 2 1 32 32 H 1.08993 * 109.47839 * 60.00073 * 6 4 3 33 33 H 1.09000 * 109.47160 * 299.99635 * 6 4 3 34 34 H 1.09001 * 109.46801 * 59.99811 * 7 6 4 35 35 H 1.09001 * 109.46998 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 37 37 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 38 38 H 1.08996 * 109.47407 * 60.00219 * 9 8 7 39 39 H 1.09000 * 109.46986 * 179.97438 * 9 8 7 40 40 H 0.96701 * 113.99655 * 59.99717 * 12 10 9 41 41 H 1.09002 * 109.46895 * 299.99524 * 16 13 2 42 42 H 1.08998 * 109.46946 * 59.99845 * 16 13 2 43 43 H 1.09006 * 109.47347 * 299.99882 * 17 16 13 44 44 H 1.09004 * 109.46958 * 59.99607 * 17 16 13 45 45 H 1.08998 * 109.47046 * 300.00043 * 18 17 16 46 46 H 1.08998 * 109.46850 * 59.99915 * 18 17 16 47 47 H 0.96998 * 120.01024 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7732 -1.4371 5 1 2.8118 1.0011 -2.0474 6 6 0.9616 2.1037 -2.0044 7 6 1.1077 2.6077 -3.4417 8 6 1.9786 3.8656 -3.4551 9 6 3.3605 3.5350 -2.8876 10 6 3.2145 3.0311 -1.4504 11 1 2.7465 3.8036 -0.8403 12 8 4.5053 2.7229 -0.9202 13 16 2.2930 -1.4341 -0.0006 14 8 1.3970 -2.3559 -0.6062 15 8 3.5395 -1.1190 -0.6057 16 6 2.5194 -1.8269 1.7558 17 6 3.2820 -3.1465 1.8892 18 6 3.4735 -3.4774 3.3707 19 6 4.2241 -4.7776 3.5021 20 1 4.5340 -5.3140 2.6173 21 6 4.5161 -5.2818 4.7516 22 7 4.1393 -4.6284 5.8289 23 14 5.4472 -6.8930 4.9145 24 1 6.9062 -6.6196 4.9569 25 1 5.0354 -7.5784 6.1658 26 1 5.1402 -7.7620 3.7501 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 3.1858 1.1177 0.4343 31 1 1.6501 2.0042 0.5895 32 1 0.4934 2.8759 -1.3941 33 1 0.3413 1.2075 -1.9953 34 1 1.5758 1.8351 -4.0518 35 1 0.1232 2.8428 -3.8461 36 1 2.0823 4.2248 -4.4789 37 1 1.5105 4.6380 -2.8449 38 1 3.8286 2.7626 -3.4977 39 1 3.9812 4.4310 -2.8975 40 1 5.1115 3.4760 -0.8983 41 1 3.0867 -1.0297 2.2362 42 1 1.5452 -1.9197 2.2358 43 1 2.7151 -3.9440 1.4088 44 1 4.2562 -3.0533 1.4092 45 1 4.0406 -2.6799 3.8507 46 1 2.4994 -3.5705 3.8510 47 1 4.3444 -4.9833 6.7081 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180007708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:02 Heat of formation + Delta-G solvation = -179.055700 kcal Electronic energy + Delta-G solvation = -25970.078841 eV Core-core repulsion = 22277.694062 eV Total energy + Delta-G solvation = -3692.384780 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.36010 -38.23199 -37.36263 -36.98376 -36.48879 -36.22474 -34.18534 -32.20776 -30.61205 -29.67682 -28.13218 -25.76262 -25.16241 -23.48689 -22.43602 -22.19142 -20.76882 -19.84520 -18.66013 -18.44478 -18.14435 -17.46798 -17.32195 -16.57783 -16.37383 -16.24367 -15.62820 -15.27437 -14.83580 -14.76359 -14.53332 -14.51450 -14.17662 -14.08397 -13.92891 -13.55957 -13.53853 -13.18632 -13.12505 -13.01708 -12.83387 -12.76921 -12.64372 -12.53184 -12.41838 -12.31551 -12.14992 -11.87290 -11.78913 -11.58138 -11.40386 -11.30161 -11.14216 -11.03039 -10.72106 -10.59390 -9.82491 -8.24268 -6.35709 -0.77258 1.38916 1.40066 1.51508 1.68960 2.38671 2.79658 3.08927 3.14145 3.34889 3.58955 3.72344 3.80146 3.87452 3.89784 4.07549 4.23183 4.31250 4.35422 4.41021 4.45718 4.52519 4.57800 4.61202 4.67045 4.69311 4.83397 4.88619 4.93159 4.97466 5.01611 5.09306 5.12158 5.22376 5.23415 5.28113 5.32549 5.42316 5.45081 5.54695 5.59492 5.70034 5.76922 6.17557 6.79364 7.00889 7.33632 8.87394 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.025602 B = 0.002727 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.406966 B =10263.812792 C =10696.185018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.996 5.996 3 C 0.127 3.873 4 C -0.104 4.104 5 H 0.046 0.954 6 C -0.116 4.116 7 C -0.126 4.126 8 C -0.112 4.112 9 C -0.150 4.150 10 C 0.111 3.889 11 H 0.079 0.921 12 O -0.587 6.587 13 S 2.616 3.384 14 O -0.988 6.988 15 O -0.984 6.984 16 C -0.610 4.610 17 C -0.106 4.106 18 C 0.032 3.968 19 C -0.554 4.554 20 H 0.059 0.941 21 C 0.003 3.997 22 N -0.930 5.930 23 Si 0.964 3.036 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.265 1.265 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.391 0.609 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.002 0.998 46 H 0.004 0.996 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.875 22.603 -15.681 28.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.835 5.835 3 C 0.002 3.998 4 C -0.124 4.124 5 H 0.065 0.935 6 C -0.153 4.153 7 C -0.164 4.164 8 C -0.150 4.150 9 C -0.188 4.188 10 C 0.052 3.948 11 H 0.097 0.903 12 O -0.395 6.395 13 S 2.712 3.288 14 O -0.978 6.978 15 O -0.974 6.974 16 C -0.740 4.740 17 C -0.145 4.145 18 C -0.006 4.006 19 C -0.592 4.592 20 H 0.077 0.923 21 C -0.195 4.195 22 N -0.570 5.570 23 Si 0.788 3.212 24 H -0.197 1.197 25 H -0.203 1.203 26 H -0.189 1.189 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.241 0.759 41 H 0.159 0.841 42 H 0.163 0.837 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.021 0.979 46 H 0.022 0.978 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.910 21.556 -16.229 28.415 hybrid contribution 0.903 -0.433 0.883 1.335 sum -8.007 21.123 -15.346 27.309 Atomic orbital electron populations 1.21889 0.76804 1.04656 1.03029 1.57279 1.16004 1.20458 1.89761 1.21489 0.96612 0.84743 0.96963 1.21634 0.96655 0.96998 0.97131 0.93503 1.21759 0.94801 1.02302 0.96430 1.21612 1.00611 0.97540 0.96591 1.21474 0.94218 0.97706 1.01591 1.22251 0.98762 1.01333 0.96452 1.21831 0.83530 0.95708 0.93740 0.90283 1.86603 1.25274 1.41677 1.85966 1.04717 0.73106 0.73249 0.77704 1.93514 1.65351 1.64046 1.74901 1.93550 1.45733 1.83332 1.74785 1.30551 1.11016 1.07229 1.25238 1.21311 0.99016 0.93399 1.00807 1.18952 0.95783 0.95384 0.90482 1.21730 1.36772 1.07894 0.92801 0.92263 1.25947 0.96758 1.01356 0.95485 1.70065 1.47735 1.40851 0.98307 0.85461 0.78824 0.78972 0.77913 1.19657 1.20320 1.18932 0.91753 0.91116 0.87601 0.90813 0.87111 0.89332 0.90940 0.93795 0.90331 0.91232 0.90206 0.93402 0.90011 0.75919 0.84109 0.83689 0.91656 0.91880 0.97944 0.97762 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 9.01 127.77 1.15 2.45 16 2 N -1.00 -22.25 3.02 -539.13 -1.63 -23.88 16 3 C 0.13 2.53 4.72 86.38 0.41 2.94 16 4 C -0.10 -2.07 2.14 -10.79 -0.02 -2.10 16 5 H 0.05 1.31 7.91 -2.39 -0.02 1.30 16 6 C -0.12 -1.64 4.72 30.60 0.14 -1.50 16 7 C -0.13 -1.68 5.92 30.60 0.18 -1.49 16 8 C -0.11 -1.21 5.92 30.59 0.18 -1.03 16 9 C -0.15 -2.06 5.54 30.59 0.17 -1.89 16 10 C 0.11 1.78 2.90 30.59 0.09 1.87 16 11 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 12 O -0.59 -11.79 12.56 -148.98 -1.87 -13.66 16 13 S 2.62 82.91 5.32 -56.49 -0.30 82.61 16 14 O -0.99 -36.19 17.09 -127.65 -2.18 -38.37 16 15 O -0.98 -37.67 16.76 -127.65 -2.14 -39.81 16 16 C -0.61 -19.86 6.18 71.98 0.44 -19.41 16 17 C -0.11 -4.58 5.16 30.59 0.16 -4.42 16 18 C 0.03 1.72 4.97 29.85 0.15 1.87 16 19 C -0.55 -32.35 9.11 25.60 0.23 -32.12 16 20 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 21 C 0.00 0.16 5.46 84.65 0.46 0.62 16 22 N -0.93 -56.52 13.29 21.44 0.28 -56.24 16 23 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 H 0.06 0.99 6.22 -2.39 -0.01 0.97 16 28 H 0.07 1.17 7.79 -2.39 -0.02 1.15 16 29 H 0.11 0.97 7.94 -2.39 -0.02 0.95 16 30 H 0.07 1.77 7.00 -2.39 -0.02 1.76 16 31 H 0.11 1.41 7.96 -2.38 -0.02 1.39 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 1.11 5.09 -2.39 -0.01 1.10 16 34 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.39 4.22 9.08 -74.06 -0.67 3.55 16 41 H 0.14 4.15 8.14 -2.39 -0.02 4.13 16 42 H 0.14 4.10 8.14 -2.39 -0.02 4.08 16 43 H 0.06 2.76 8.14 -2.38 -0.02 2.74 16 44 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 45 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 46 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -79.47 379.70 -1.80 -81.27 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.26 Total: 15.36 kcal Atomic # 6 Polarization: -57.97 SS G_CDS: 3.75 Total: -54.22 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -1.34 Total: -80.12 kcal Atomic # 8 Polarization: -85.65 SS G_CDS: -6.19 Total: -91.84 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 82.91 SS G_CDS: -0.30 Total: 82.61 kcal Total: -79.47 -1.80 -81.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180007708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.783 kcal (2) G-P(sol) polarization free energy of solvation -79.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds