Wall clock time and date at job start Tue Mar 31 2020 12:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35715 * 117.00103 * 2 1 4 4 C 1.39185 * 119.86270 * 359.72881 * 3 2 1 5 5 C 1.37538 * 120.24093 * 179.76226 * 4 3 2 6 6 C 1.39863 * 119.96318 * 0.52971 * 5 4 3 7 7 C 1.47294 * 120.13533 * 179.74215 * 6 5 4 8 8 O 1.21622 * 120.00222 * 179.97438 * 7 6 5 9 9 N 1.34774 * 120.00255 * 359.97438 * 7 6 5 10 10 C 1.46504 * 120.00392 * 179.97438 * 9 7 6 11 11 C 1.52991 * 109.47147 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.47059 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99677 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00188 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99982 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00178 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46911 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47156 * 120.00247 * 16 14 12 19 19 H 1.48503 * 109.47393 * 240.00411 * 16 14 12 20 20 C 1.40295 * 119.73012 * 359.72533 * 6 5 4 21 21 O 1.35660 * 120.12267 * 179.97438 * 20 6 5 22 22 C 1.42899 * 117.00173 * 180.02562 * 21 20 6 23 23 C 1.52994 * 109.47029 * 180.02562 * 22 21 20 24 24 C 1.52998 * 117.49719 * 243.61921 * 23 22 21 25 25 C 1.52996 * 60.00457 * 252.51065 * 24 23 22 26 26 C 1.38450 * 119.75885 * 359.97438 * 20 6 5 27 27 H 1.08996 * 109.47255 * 299.99772 * 1 2 3 28 28 H 1.09001 * 109.47761 * 59.99883 * 1 2 3 29 29 H 1.09005 * 109.47515 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.87747 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.01991 * 180.25257 * 5 4 3 32 32 H 0.97004 * 119.99877 * 0.02562 * 9 7 6 33 33 H 1.09008 * 109.46874 * 300.00236 * 10 9 7 34 34 H 1.09000 * 109.46758 * 59.99714 * 10 9 7 35 35 H 1.08996 * 109.47848 * 299.99742 * 11 10 9 36 36 H 1.09000 * 109.47491 * 60.00205 * 11 10 9 37 37 H 0.97002 * 119.99796 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.47286 * 300.00269 * 22 21 20 39 39 H 1.09002 * 109.47203 * 59.99589 * 22 21 20 40 40 H 1.09001 * 115.55187 * 29.33218 * 23 22 21 41 41 H 1.08998 * 117.50115 * 0.02562 * 24 23 22 42 42 H 1.09005 * 117.49824 * 145.02128 * 24 23 22 43 43 H 1.08998 * 117.50644 * 252.51316 * 25 24 23 44 44 H 1.09001 * 117.49514 * 107.48503 * 25 24 23 45 45 H 1.08000 * 119.98329 * 180.02562 * 26 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2843 2.3747 -0.0057 5 6 1.9006 3.6043 -0.0008 6 6 3.2968 3.6858 -0.0013 7 6 3.9608 5.0006 -0.0018 8 8 5.1751 5.0687 -0.0017 9 7 3.2227 6.1283 -0.0023 10 6 3.8831 7.4361 -0.0023 11 6 2.8254 8.5415 -0.0036 12 6 3.5047 9.8867 -0.0029 13 1 4.5831 9.9471 -0.0012 14 6 2.7497 11.0403 -0.0044 15 7 1.4366 10.9668 -0.0060 16 14 3.5917 12.7078 -0.0029 17 1 5.0646 12.5185 -0.0006 18 1 3.1923 13.4652 -1.2162 19 1 3.1877 13.4653 1.2089 20 6 4.0624 2.5101 -0.0009 21 8 5.4172 2.5799 -0.0018 22 6 6.1306 1.3418 -0.0019 23 6 7.6350 1.6201 -0.0024 24 6 8.4390 1.1555 -1.2184 25 6 8.5757 0.4191 0.1157 26 6 3.4302 1.2784 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2060 2.3133 -0.0097 31 1 1.3067 4.5064 -0.0012 32 1 2.2542 6.0741 -0.0020 33 1 4.5052 7.5289 0.8880 34 1 4.5060 7.5285 -0.8920 35 1 2.2037 8.4485 -0.8941 36 1 2.2022 8.4492 0.8859 37 1 0.9054 11.7784 -0.0067 38 1 5.8674 0.7707 0.8884 39 1 5.8662 0.7701 -0.8915 40 1 7.9415 2.5487 0.4791 41 1 7.8960 0.6520 -2.0183 42 1 9.2746 1.7786 -1.5373 43 1 9.5011 0.5577 0.6746 44 1 8.1226 -0.5692 0.1937 45 1 4.0160 0.3711 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350118921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:09 Heat of formation + Delta-G solvation = -67.045508 kcal Electronic energy + Delta-G solvation = -25922.879662 eV Core-core repulsion = 22099.908057 eV Total energy + Delta-G solvation = -3822.971605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.84891 -39.43078 -38.78978 -37.33737 -36.24400 -34.71153 -32.81072 -31.26218 -30.26061 -29.37132 -27.62147 -27.57025 -24.85392 -23.44381 -22.67028 -22.28525 -21.07314 -20.83086 -19.98713 -18.99337 -17.31229 -17.15337 -16.56710 -16.26681 -16.24278 -15.91080 -15.48524 -14.95888 -14.82802 -14.70745 -14.55183 -14.41197 -13.90220 -13.31936 -13.20264 -12.91995 -12.62768 -12.59820 -12.38299 -12.24710 -11.99175 -11.75174 -11.44574 -11.23389 -11.11950 -11.03439 -10.91463 -10.70966 -10.59036 -10.26824 -10.18468 -9.70794 -9.38370 -9.10404 -8.83110 -8.49188 -8.34705 -8.10572 -6.06660 -4.08837 0.88382 1.21288 2.78200 3.00599 3.08667 3.30484 3.37886 3.43299 3.57054 3.79013 3.96474 4.40797 4.44816 4.50369 4.59079 4.68711 4.77509 4.78685 4.82754 4.92769 4.98082 5.08465 5.10499 5.16035 5.26362 5.30599 5.31864 5.35696 5.45249 5.62419 5.82390 5.83150 5.96852 6.03473 6.12206 6.31009 6.43615 6.45300 6.81724 6.98825 7.04028 7.30429 7.57211 7.66781 7.92626 8.14371 8.33128 8.82474 8.97795 9.55828 11.05107 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010955 B = 0.002885 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.253738 B = 9703.845373 C =12158.165979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.186 3.814 4 C -0.254 4.254 5 C -0.007 4.007 6 C -0.200 4.200 7 C 0.553 3.447 8 O -0.531 6.531 9 N -0.723 5.723 10 C 0.124 3.876 11 C 0.012 3.988 12 C -0.519 4.519 13 H 0.060 0.940 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.224 3.776 21 O -0.266 6.266 22 C 0.083 3.917 23 C -0.153 4.153 24 C -0.175 4.175 25 C -0.172 4.172 26 C -0.260 4.260 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.393 0.607 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.261 0.739 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 -26.461 -0.232 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.140 3.860 4 C -0.272 4.272 5 C -0.026 4.026 6 C -0.204 4.204 7 C 0.340 3.660 8 O -0.408 6.408 9 N -0.374 5.374 10 C 0.002 3.998 11 C -0.026 4.026 12 C -0.558 4.558 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 C 0.175 3.825 21 O -0.177 6.177 22 C 0.008 3.992 23 C -0.171 4.171 24 C -0.212 4.212 25 C -0.209 4.209 26 C -0.279 4.279 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.153 0.847 31 H 0.157 0.843 32 H 0.227 0.773 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.139 0.861 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.106 -26.298 -0.235 26.384 hybrid contribution -0.592 0.825 -0.005 1.015 sum 1.514 -25.474 -0.239 25.520 Atomic orbital electron populations 1.23131 0.77814 1.04099 1.01924 1.86013 1.21901 1.26997 1.87847 1.18839 0.91451 0.84189 0.91524 1.21047 1.00354 0.91776 1.14063 1.21022 0.92384 0.97850 0.91313 1.19455 0.92853 0.92428 1.15686 1.17849 0.87113 0.83549 0.77522 1.90794 1.13129 1.87230 1.49690 1.46224 1.09987 1.06638 1.74550 1.21688 0.97079 0.80222 1.00791 1.19331 0.93662 0.91783 0.97788 1.21107 0.93322 0.90385 1.50938 0.92178 1.24997 0.94841 0.99446 0.95064 1.69969 1.04345 1.28428 1.50683 0.86465 0.79863 0.83720 0.77574 1.19570 1.20966 1.20961 1.18604 0.82918 0.91696 0.89315 1.86424 1.13967 1.31167 1.86093 1.22416 0.90280 0.85208 1.01312 1.22082 0.90662 1.00392 1.03965 1.23085 1.03043 1.03523 0.91549 1.22990 1.01004 0.96001 1.00878 1.20288 0.92643 0.97341 1.17647 0.92184 0.92194 0.88127 0.84705 0.84253 0.77250 0.92580 0.92577 0.95954 0.95963 0.92955 0.91441 0.91769 0.86056 0.88632 0.88324 0.88194 0.88665 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.80 101.05 0.99 1.14 16 2 O -0.31 -3.10 10.48 -18.85 -0.20 -3.29 16 3 C 0.19 2.10 6.69 -39.06 -0.26 1.84 16 4 C -0.25 -2.69 9.01 -39.49 -0.36 -3.05 16 5 C -0.01 -0.08 9.52 -39.23 -0.37 -0.46 16 6 C -0.20 -3.12 5.89 -104.83 -0.62 -3.73 16 7 C 0.55 10.57 7.76 -12.58 -0.10 10.48 16 8 O -0.53 -11.97 15.15 -16.67 -0.25 -12.22 16 9 N -0.72 -13.52 5.50 -61.42 -0.34 -13.86 16 10 C 0.12 2.76 5.61 -4.04 -0.02 2.73 16 11 C 0.01 0.30 5.09 -27.89 -0.14 0.15 16 12 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 13 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 16 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 C 0.22 3.29 6.70 -38.73 -0.26 3.03 16 21 O -0.27 -4.12 8.20 -40.61 -0.33 -4.45 16 22 C 0.08 0.91 5.02 37.15 0.19 1.10 16 23 C -0.15 -1.60 6.06 -90.62 -0.55 -2.15 16 24 C -0.18 -1.54 10.18 -26.73 -0.27 -1.81 16 25 C -0.17 -1.32 10.25 -26.73 -0.27 -1.59 16 26 C -0.26 -3.14 8.96 -39.34 -0.35 -3.49 16 27 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 28 H 0.06 0.31 7.64 -51.93 -0.40 -0.09 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.14 1.06 6.27 -52.49 -0.33 0.73 16 31 H 0.14 1.46 6.39 -52.49 -0.34 1.13 16 32 H 0.39 6.29 6.49 -40.82 -0.26 6.02 16 33 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.07 0.63 7.66 -51.93 -0.40 0.23 16 39 H 0.06 0.61 7.40 -51.93 -0.38 0.22 16 40 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.14 1.41 6.29 -52.49 -0.33 1.08 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -34.29 377.73 -9.12 -43.41 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.60 Total: 2.91 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -2.81 Total: -9.17 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.40 Total: -39.45 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.78 Total: -19.97 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.29 -9.12 -43.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350118921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.633 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds