Wall clock time and date at job start Tue Mar 31 2020 12:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46902 * 111.00028 * 2 1 4 4 C 1.50705 * 109.46660 * 293.95050 * 3 2 1 5 5 H 1.07992 * 120.00155 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99730 * 179.97438 * 4 3 2 7 7 N 1.31523 * 120.00224 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00097 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47357 * 90.00319 * 8 6 4 10 10 H 1.48504 * 109.47141 * 210.00093 * 8 6 4 11 11 H 1.48499 * 109.46891 * 330.00112 * 8 6 4 12 12 C 1.46907 * 110.99852 * 123.95265 * 2 1 3 13 13 C 1.52995 * 109.46879 * 66.04714 * 12 2 1 14 14 H 1.08994 * 109.47430 * 304.99563 * 13 12 2 15 15 O 1.42902 * 109.47483 * 65.00232 * 13 12 2 16 16 C 1.53006 * 109.46794 * 184.99803 * 13 12 2 17 17 O 1.42898 * 109.47289 * 174.99918 * 16 13 12 18 18 C 1.35663 * 117.00090 * 179.97438 * 17 16 13 19 19 C 1.39074 * 119.96944 * 0.02562 * 18 17 16 20 20 C 1.36402 * 120.25213 * 180.02562 * 19 18 17 21 21 C 1.40573 * 120.25991 * 359.96781 * 20 19 18 22 22 C 1.39662 * 119.40084 * 0.02562 * 21 20 19 23 23 C 1.37933 * 119.88969 * 359.95544 * 22 21 20 24 24 C 1.50977 * 109.57797 * 179.97438 * 22 21 20 25 25 C 1.53491 * 106.25668 * 0.02562 * 24 22 21 26 26 C 1.47129 * 129.93491 * 179.89789 * 21 20 19 27 27 O 1.21299 * 126.01780 * 0.05955 * 26 21 20 28 28 H 1.08996 * 109.46902 * 296.04522 * 1 2 3 29 29 H 1.08994 * 109.46916 * 56.04724 * 1 2 3 30 30 H 1.09004 * 109.46670 * 176.04900 * 1 2 3 31 31 H 1.08989 * 109.47129 * 53.95122 * 3 2 1 32 32 H 1.08999 * 109.46847 * 173.95536 * 3 2 1 33 33 H 0.96996 * 120.00215 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.46755 * 306.04427 * 12 2 1 35 35 H 1.08999 * 109.46669 * 186.04567 * 12 2 1 36 36 H 0.96704 * 113.99764 * 59.99470 * 15 13 12 37 37 H 1.09001 * 109.46981 * 55.00162 * 16 13 12 38 38 H 1.08997 * 109.47206 * 295.00188 * 16 13 12 39 39 H 1.08001 * 119.87288 * 0.02562 * 19 18 17 40 40 H 1.07992 * 119.86887 * 179.97438 * 20 19 18 41 41 H 1.08004 * 119.93170 * 179.97438 * 23 22 21 42 42 H 1.08997 * 110.09852 * 240.79830 * 24 22 21 43 43 H 1.09008 * 110.10068 * 119.19508 * 24 22 21 44 44 H 1.09002 * 110.27112 * 118.96952 * 25 24 22 45 45 H 1.09003 * 110.26932 * 240.93681 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2986 5 1 1.0741 1.5114 -2.0485 6 6 2.0268 3.3493 -1.5286 7 7 2.7120 4.0019 -0.6151 8 14 1.5819 4.1871 -3.1378 9 1 0.2695 4.8672 -2.9956 10 1 2.6239 5.1886 -3.4792 11 1 1.4987 3.1715 -4.2180 12 6 1.9955 -0.7660 1.1377 13 6 1.6315 -2.2426 0.9704 14 1 0.5533 -2.3389 0.8433 15 8 2.2957 -2.7696 -0.1799 16 6 2.0700 -3.0199 2.2132 17 8 1.6273 -4.3745 2.1086 18 6 1.9369 -5.2047 3.1360 19 6 2.6538 -4.7235 4.2262 20 6 2.9686 -5.5532 5.2621 21 6 2.5703 -6.9010 5.2363 22 6 1.8502 -7.3823 4.1406 23 6 1.5366 -6.5350 3.0984 24 6 1.5405 -8.8462 4.3423 25 6 2.1506 -9.2318 5.6969 26 6 2.7923 -7.9705 6.2220 27 8 3.3855 -7.8589 7.2741 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0708 31 1 1.5612 1.9273 0.8308 32 1 3.0798 1.3444 0.1082 33 1 2.9866 4.9180 -0.7771 34 1 1.5612 -0.3872 2.0628 35 1 3.0798 -0.6611 1.1756 36 1 3.2603 -2.7167 -0.1358 37 1 1.6330 -2.5623 3.1008 38 1 3.1570 -2.9978 2.2908 39 1 2.9626 -3.6889 4.2527 40 1 3.5260 -5.1731 6.1054 41 1 0.9801 -6.9066 2.2506 42 1 1.9918 -9.4377 3.5458 43 1 0.4617 -9.0019 4.3600 44 1 1.3714 -9.5724 6.3788 45 1 2.9024 -10.0099 5.5647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414128200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:52 Heat of formation + Delta-G solvation = -94.166107 kcal Electronic energy + Delta-G solvation = -25542.569917 eV Core-core repulsion = 21718.422275 eV Total energy + Delta-G solvation = -3824.147642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.09356 -39.78222 -38.18864 -37.35824 -35.55320 -34.80670 -32.59467 -31.59741 -30.33649 -29.12512 -27.42997 -26.77640 -25.93264 -24.19687 -23.37451 -21.80655 -21.09988 -20.33278 -20.25794 -18.07206 -16.97947 -16.80129 -16.69505 -16.40326 -16.18828 -15.73533 -15.24122 -14.98581 -14.81733 -14.43941 -14.31127 -13.86143 -13.77081 -13.57213 -13.55589 -13.33765 -12.89546 -12.80939 -12.57452 -12.53451 -11.98010 -11.80349 -11.47248 -11.38721 -11.14042 -11.10630 -10.96870 -10.81971 -10.73698 -10.36588 -10.10457 -10.02147 -9.77613 -9.31619 -9.21899 -8.58560 -8.48229 -7.31377 -6.07179 -4.08432 0.33413 0.93752 2.05926 2.69506 3.29723 3.35096 3.36068 3.41106 3.62659 4.03898 4.26671 4.37180 4.39287 4.45986 4.54484 4.59223 4.67717 4.79649 4.84770 4.90472 5.07242 5.09114 5.20893 5.26111 5.27295 5.31000 5.35837 5.37326 5.45671 5.61466 5.79490 5.88355 5.93914 5.99556 6.06707 6.14559 6.23990 6.26292 6.69920 7.01992 7.18324 7.18431 7.24321 7.73694 7.84185 8.01257 8.11127 8.47158 8.99350 9.56045 11.03742 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.039490 B = 0.001886 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.865450 B =14845.692359 C =15286.068407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.507 4.507 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.028 3.972 13 C 0.116 3.884 14 H 0.108 0.892 15 O -0.537 6.537 16 C 0.023 3.977 17 O -0.294 6.294 18 C 0.178 3.822 19 C -0.227 4.227 20 C -0.005 4.005 21 C -0.243 4.243 22 C -0.007 4.007 23 C -0.160 4.160 24 C -0.083 4.083 25 C -0.172 4.172 26 C 0.410 3.590 27 O -0.454 6.454 28 H 0.010 0.990 29 H 0.077 0.923 30 H 0.048 0.952 31 H -0.009 1.009 32 H 0.029 0.971 33 H 0.261 0.739 34 H 0.033 0.967 35 H 0.075 0.925 36 H 0.371 0.629 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.789 -24.666 11.693 27.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.102 4.102 13 C 0.055 3.945 14 H 0.125 0.875 15 O -0.341 6.341 16 C -0.052 4.052 17 O -0.206 6.206 18 C 0.131 3.869 19 C -0.246 4.246 20 C -0.023 4.023 21 C -0.244 4.244 22 C -0.008 4.008 23 C -0.179 4.179 24 C -0.120 4.120 25 C -0.209 4.209 26 C 0.289 3.711 27 O -0.330 6.330 28 H 0.029 0.971 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.008 0.992 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.217 0.783 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.155 0.845 40 H 0.148 0.852 41 H 0.156 0.844 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.126 0.874 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.956 -24.787 11.451 27.374 hybrid contribution 0.235 1.448 0.304 1.499 sum -1.721 -23.338 11.755 26.188 Atomic orbital electron populations 1.22296 0.88783 0.99727 1.00688 1.62020 1.07021 1.17618 1.38652 1.19759 0.95324 0.81287 0.96813 1.21153 1.34850 0.96872 1.01671 0.91717 1.25001 0.95262 0.97351 0.97094 1.69956 1.38375 1.11463 1.34154 0.86473 0.77975 0.79198 0.83645 1.20743 1.21248 1.19691 1.22626 1.00918 0.92627 0.94020 1.21982 0.98921 0.90710 0.82843 0.87456 1.86652 1.23142 1.83707 1.40610 1.23869 1.00155 0.79780 1.01433 1.86134 1.73074 1.21264 1.40099 1.19258 0.90912 0.90288 0.86438 1.20999 1.06140 1.01694 0.95734 1.20657 0.93615 0.91254 0.96811 1.20969 1.08322 0.95698 0.99452 1.20291 0.92857 0.95480 0.92136 1.19734 1.06887 0.90507 1.00750 1.20822 1.02538 0.91355 0.97236 1.22303 1.02396 0.98334 0.97892 1.22366 0.75475 0.89309 0.83927 1.90557 1.34254 1.85385 1.22770 0.97119 0.90417 0.93376 0.99157 0.95266 0.92904 0.94934 0.90702 0.78279 0.90791 0.91134 0.84521 0.85152 0.84371 0.88675 0.88700 0.87393 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 9.15 60.07 0.55 1.19 16 2 N -0.53 -10.99 4.70 -244.37 -1.15 -12.14 16 3 C 0.19 4.90 4.72 -4.97 -0.02 4.87 16 4 C -0.51 -14.08 8.46 -34.44 -0.29 -14.37 16 5 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.03 0.44 4.60 -3.82 -0.02 0.42 16 13 C 0.12 1.56 3.20 -26.73 -0.09 1.47 16 14 H 0.11 1.53 6.33 -51.93 -0.33 1.20 16 15 O -0.54 -8.02 13.25 -40.08 -0.53 -8.55 16 16 C 0.02 0.25 4.37 37.16 0.16 0.41 16 17 O -0.29 -3.46 10.09 -23.54 -0.24 -3.70 16 18 C 0.18 1.88 6.70 -39.00 -0.26 1.62 16 19 C -0.23 -2.18 8.96 -39.93 -0.36 -2.54 16 20 C -0.01 -0.05 10.05 -39.36 -0.40 -0.44 16 21 C -0.24 -2.34 6.12 -104.88 -0.64 -2.98 16 22 C -0.01 -0.06 6.20 -104.07 -0.65 -0.70 16 23 C -0.16 -1.48 9.98 -39.42 -0.39 -1.87 16 24 C -0.08 -0.40 6.80 -27.49 -0.19 -0.59 16 25 C -0.17 -0.91 6.86 -27.51 -0.19 -1.10 16 26 C 0.41 3.88 7.77 -30.59 -0.24 3.65 16 27 O -0.45 -5.79 18.03 5.54 0.10 -5.69 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 1.60 6.76 -51.93 -0.35 1.25 16 30 H 0.05 0.79 6.37 -51.93 -0.33 0.46 16 31 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 32 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.03 0.50 8.12 -51.93 -0.42 0.07 16 35 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 36 H 0.37 4.31 9.05 45.56 0.41 4.72 16 37 H 0.07 0.69 7.65 -51.93 -0.40 0.29 16 38 H 0.07 0.64 7.65 -51.93 -0.40 0.24 16 39 H 0.14 1.12 6.28 -52.49 -0.33 0.79 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 42 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 44 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -33.62 374.05 -9.44 -43.06 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.86 Total: 0.12 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -3.11 Total: -9.54 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.41 Total: -37.79 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.67 Total: -17.94 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.62 -9.44 -43.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414128200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.110 kcal (2) G-P(sol) polarization free energy of solvation -33.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds