Wall clock time and date at job start Tue Mar 31 2020 12:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99981 * 2 1 4 4 H 1.08989 * 109.49830 * 30.06622 * 3 2 1 5 5 C 1.53041 * 109.49519 * 150.16146 * 3 2 1 6 6 C 1.53037 * 109.53771 * 181.31135 * 5 3 2 7 7 C 1.53188 * 109.31693 * 298.63658 * 6 5 3 8 8 N 1.46932 * 108.77342 * 54.63142 * 7 6 5 9 9 C 1.34773 * 120.63039 * 126.41684 * 8 7 6 10 10 O 1.21280 * 120.00413 * 179.97438 * 9 8 7 11 11 C 1.50706 * 119.99938 * 359.97438 * 9 8 7 12 12 C 1.50697 * 109.46964 * 180.02562 * 11 9 8 13 13 C 1.38326 * 119.96899 * 90.00020 * 12 11 9 14 14 C 1.38278 * 120.13741 * 179.97438 * 13 12 11 15 15 C 1.38116 * 120.06882 * 0.02562 * 14 13 12 16 16 C 1.38853 * 119.93476 * 359.97438 * 15 14 13 17 17 O 1.35754 * 120.06905 * 179.97438 * 16 15 14 18 18 C 1.34825 * 116.99929 * 354.46804 * 17 16 15 19 19 H 1.08001 * 120.00328 * 5.05651 * 18 17 16 20 20 C 1.38661 * 120.00031 * 185.05322 * 18 17 16 21 21 N 1.31564 * 119.99397 * 0.02562 * 20 18 17 22 22 Si 1.86789 * 120.00390 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47267 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47601 * 119.99957 * 22 20 18 25 25 H 1.48498 * 109.47325 * 240.00260 * 22 20 18 26 26 C 1.38082 * 119.96400 * 269.72079 * 12 11 9 27 27 C 1.46921 * 118.74000 * 306.39308 * 8 7 6 28 28 H 1.08999 * 109.47148 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47037 * 59.99828 * 1 2 3 30 30 H 1.09004 * 109.47096 * 300.00418 * 1 2 3 31 31 H 1.09001 * 109.46229 * 301.33709 * 5 3 2 32 32 H 1.08998 * 109.46220 * 61.29375 * 5 3 2 33 33 H 1.08997 * 109.49914 * 178.68118 * 6 5 3 34 34 H 1.09003 * 109.52245 * 58.60511 * 6 5 3 35 35 H 1.09004 * 109.58703 * 294.84538 * 7 6 5 36 36 H 1.08993 * 109.71155 * 174.48991 * 7 6 5 37 37 H 1.09006 * 109.46740 * 299.99799 * 11 9 8 38 38 H 1.08997 * 109.47584 * 59.99664 * 11 9 8 39 39 H 1.07997 * 119.92838 * 359.96826 * 13 12 11 40 40 H 1.08004 * 119.95974 * 179.97438 * 14 13 12 41 41 H 1.08005 * 120.03289 * 180.02562 * 15 14 13 42 42 H 0.97001 * 119.99595 * 179.97438 * 21 20 18 43 43 H 1.07994 * 120.03034 * 0.02562 * 26 12 11 44 44 H 1.09007 * 109.58974 * 293.82557 * 27 8 7 45 45 H 1.08995 * 109.58831 * 173.39590 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3460 1.9994 0.5147 5 6 3.3612 1.2630 0.7178 6 6 3.9695 2.6670 0.7471 7 6 4.1998 3.1495 -0.6885 8 7 2.9334 3.0558 -1.4277 9 6 2.4374 4.1266 -2.0787 10 8 1.3913 4.0364 -2.6857 11 6 3.1827 5.4362 -2.0524 12 6 2.4214 6.4635 -2.8499 13 6 1.4727 7.2560 -2.2290 14 6 0.7725 8.2001 -2.9573 15 6 1.0182 8.3542 -4.3077 16 6 1.9698 7.5602 -4.9339 17 8 2.2131 7.7090 -6.2611 18 6 1.4185 8.5631 -6.9371 19 1 0.6853 9.1530 -6.4071 20 6 1.5427 8.6843 -8.3128 21 7 2.4356 7.9654 -8.9584 22 14 0.4424 9.8680 -9.2493 23 1 -0.4707 10.5524 -8.2989 24 1 1.2802 10.8774 -9.9453 25 1 -0.3578 9.1151 -10.2483 26 6 2.6756 6.6167 -4.1984 27 6 2.2183 1.7725 -1.4441 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 3.2192 0.9074 1.7383 32 1 4.0328 0.5873 0.1882 33 1 4.9206 2.6404 1.2789 34 1 3.2876 3.3489 1.2551 35 1 4.9506 2.5221 -1.1689 36 1 4.5410 4.1846 -0.6781 37 1 3.2818 5.7772 -1.0218 38 1 4.1731 5.2995 -2.4866 39 1 1.2785 7.1370 -1.1734 40 1 0.0321 8.8170 -2.4698 41 1 0.4712 9.0920 -4.8759 42 1 2.5222 8.0498 -9.9209 43 1 3.4193 6.0005 -4.6816 44 1 2.8075 1.0327 -1.9861 45 1 1.2509 1.8994 -1.9300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089815583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:46 Heat of formation + Delta-G solvation = -107.517206 kcal Electronic energy + Delta-G solvation = -26442.702644 eV Core-core repulsion = 22617.976055 eV Total energy + Delta-G solvation = -3824.726589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.50359 -40.66487 -39.47171 -38.20855 -37.39802 -34.36076 -33.84289 -33.29943 -31.51894 -30.83413 -28.74132 -27.50538 -27.23081 -26.14322 -23.85407 -23.28838 -22.84180 -21.81598 -20.17497 -19.40132 -18.74719 -18.37629 -17.41283 -17.12784 -16.86061 -16.60425 -16.37587 -16.15952 -16.00735 -15.78688 -15.48823 -15.12062 -14.93886 -14.63595 -14.40606 -14.09821 -14.02448 -13.87995 -13.79453 -13.58572 -12.99504 -12.88486 -12.82011 -12.52505 -12.36928 -12.25045 -12.22995 -12.09290 -12.00728 -11.88109 -11.57593 -11.20806 -10.99927 -10.83305 -10.75833 -9.66335 -9.63438 -8.98292 -8.47985 -6.16392 0.50776 0.75119 1.33094 1.42115 1.52044 1.59457 1.88686 2.16898 2.76800 2.84082 3.14015 3.43382 3.59602 3.76437 3.81335 3.97092 4.00502 4.07413 4.09660 4.17864 4.30662 4.37847 4.41240 4.44441 4.50274 4.57356 4.58568 4.67426 4.70843 4.73144 4.79147 4.81367 4.94130 5.03739 5.09796 5.12449 5.15505 5.29952 5.32840 5.46515 5.64424 5.72187 5.74598 6.02309 6.14009 6.21319 6.36098 6.96750 7.15759 7.78510 8.75980 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021487 B = 0.002514 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.783848 B =11132.844431 C =11403.904246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.081 3.919 4 H 0.062 0.938 5 C -0.114 4.114 6 C -0.125 4.125 7 C 0.092 3.908 8 N -0.608 5.608 9 C 0.513 3.487 10 O -0.582 6.582 11 C -0.087 4.087 12 C -0.026 4.026 13 C -0.180 4.180 14 C -0.073 4.073 15 C -0.247 4.247 16 C 0.112 3.888 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.100 0.900 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.252 1.252 24 H -0.265 1.265 25 H -0.270 1.270 26 C -0.193 4.193 27 C 0.090 3.910 28 H 0.103 0.897 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.146 0.854 38 H 0.123 0.877 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.117 0.883 42 H 0.272 0.728 43 H 0.105 0.895 44 H 0.074 0.926 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 -11.103 24.860 27.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C 0.022 3.978 4 H 0.080 0.920 5 C -0.151 4.151 6 C -0.163 4.163 7 C -0.029 4.029 8 N -0.343 5.343 9 C 0.303 3.697 10 O -0.461 6.461 11 C -0.126 4.126 12 C -0.027 4.027 13 C -0.198 4.198 14 C -0.091 4.091 15 C -0.266 4.266 16 C 0.062 3.938 17 O -0.142 6.142 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.222 4.222 21 N -0.561 5.561 22 Si 0.839 3.161 23 H -0.175 1.175 24 H -0.190 1.190 25 H -0.195 1.195 26 C -0.212 4.212 27 C -0.034 4.034 28 H 0.121 0.879 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.131 0.869 37 H 0.164 0.836 38 H 0.141 0.859 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.135 0.865 42 H 0.081 0.919 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.685 -11.474 24.211 26.927 hybrid contribution -0.867 0.476 -1.318 1.648 sum 1.818 -10.997 22.893 25.463 Atomic orbital electron populations 1.22967 0.79928 1.03954 1.00339 1.87876 1.20988 1.27692 1.94944 1.22491 0.96748 0.84420 0.94145 0.92022 1.21620 0.93718 0.98588 1.01220 1.21915 1.03347 0.95204 0.95804 1.22234 0.83726 1.04867 0.92098 1.48145 1.24718 1.09527 1.51938 1.21079 0.84990 0.86085 0.77543 1.90741 1.25950 1.84971 1.44406 1.20740 0.99281 0.88929 1.03684 1.19204 0.96328 0.95620 0.91541 1.20964 0.99145 0.98910 1.00795 1.21132 0.98294 0.97522 0.92174 1.21297 1.03677 1.04620 0.97029 1.19869 0.94539 0.94602 0.84784 1.83933 1.53808 1.59643 1.16803 1.21865 1.17177 1.19192 0.90705 0.88248 1.26626 0.99180 1.00155 0.96256 1.70202 1.35224 1.41261 1.09420 0.84509 0.77101 0.76628 0.77812 1.17509 1.18958 1.19465 1.20213 1.05011 1.01260 0.94707 1.21972 0.97876 0.85147 0.98389 0.87887 0.94788 0.92858 0.89936 0.90699 0.86851 0.90965 0.89781 0.86861 0.83590 0.85933 0.83487 0.83661 0.86476 0.91857 0.87677 0.90812 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.82 113.37 1.23 1.61 16 2 O -0.40 -7.68 10.35 -148.98 -1.54 -9.22 16 3 C 0.08 1.40 2.76 30.67 0.08 1.48 16 4 H 0.06 1.09 7.79 -2.39 -0.02 1.07 16 5 C -0.11 -1.29 5.54 30.62 0.17 -1.12 16 6 C -0.12 -0.93 6.08 30.67 0.19 -0.74 16 7 C 0.09 0.99 6.34 86.36 0.55 1.54 16 8 N -0.61 -12.64 2.97 -818.91 -2.43 -15.07 16 9 C 0.51 14.69 7.69 87.66 0.67 15.36 16 10 O -0.58 -23.61 15.45 -3.03 -0.05 -23.66 16 11 C -0.09 -2.06 4.18 29.10 0.12 -1.93 16 12 C -0.03 -0.93 4.37 -19.88 -0.09 -1.02 16 13 C -0.18 -5.94 9.70 22.30 0.22 -5.73 16 14 C -0.07 -2.70 10.04 22.25 0.22 -2.47 16 15 C -0.25 -11.54 9.17 22.39 0.21 -11.34 16 16 C 0.11 5.98 6.65 22.58 0.15 6.13 16 17 O -0.23 -14.93 9.76 -22.74 -0.22 -15.15 16 18 C -0.41 -25.25 9.49 67.92 0.64 -24.60 16 19 H 0.10 5.61 5.20 -2.91 -0.02 5.60 16 20 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 21 N -0.92 -58.64 13.67 21.62 0.30 -58.34 16 22 Si 1.02 44.58 29.55 68.60 2.03 46.60 16 23 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 26 C -0.19 -8.83 9.64 22.39 0.22 -8.61 16 27 C 0.09 2.00 6.05 86.36 0.52 2.52 16 28 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.03 0.60 8.02 -2.39 -0.02 0.58 16 30 H 0.05 0.70 8.09 -2.39 -0.02 0.68 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.11 0.77 5.93 -2.39 -0.01 0.76 16 37 H 0.15 2.07 7.64 -2.38 -0.02 2.06 16 38 H 0.12 2.39 7.88 -2.39 -0.02 2.37 16 39 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 40 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 41 H 0.12 5.54 5.64 -2.91 -0.02 5.52 16 42 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 43 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 44 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.06 1.77 6.88 -2.39 -0.02 1.75 16 Total: -1.00 -85.83 369.63 4.63 -81.19 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.99 Total: 23.60 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 5.57 Total: -29.95 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -2.14 Total: -73.41 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -1.81 Total: -48.04 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -85.83 4.63 -81.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089815583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.324 kcal (2) G-P(sol) polarization free energy of solvation -85.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds