Wall clock time and date at job start Tue Mar 31 2020 12:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42904 * 113.99802 * 2 1 4 4 C 1.53000 * 109.46972 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47009 * 65.00376 * 4 3 2 6 6 C 1.46506 * 120.00083 * 89.16969 * 5 4 3 7 7 C 1.50700 * 109.46827 * 96.75981 * 6 5 4 8 8 H 1.08006 * 119.99436 * 114.20953 * 7 6 5 9 9 C 1.37874 * 120.00129 * 293.92329 * 7 6 5 10 10 N 1.31511 * 120.00215 * 349.62844 * 9 7 6 11 11 Si 1.86800 * 119.99806 * 169.62161 * 9 7 6 12 12 H 1.48507 * 109.47201 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47140 * 120.00302 * 11 9 7 14 14 H 1.48497 * 109.47114 * 240.00641 * 11 9 7 15 15 C 1.34779 * 120.00056 * 269.16844 * 5 4 3 16 16 O 1.21281 * 119.99777 * 7.69037 * 15 5 4 17 17 C 1.50699 * 120.00074 * 187.69351 * 15 5 4 18 18 H 1.09001 * 109.69548 * 18.26639 * 17 15 5 19 19 C 1.53401 * 109.70077 * 257.70285 * 17 15 5 20 20 O 1.42833 * 108.37602 * 175.58125 * 19 17 15 21 21 C 1.35841 * 117.86411 * 49.18258 * 20 19 17 22 22 C 1.39146 * 118.50569 * 162.82588 * 21 20 19 23 23 C 1.37962 * 120.21663 * 179.80044 * 22 21 20 24 24 C 1.38292 * 119.96156 * 359.97438 * 23 22 21 25 25 C 1.38105 * 119.97865 * 0.08495 * 24 23 22 26 26 C 1.38373 * 121.80212 * 342.76398 * 21 20 19 27 27 C 1.50793 * 121.41806 * 0.48758 * 26 21 20 28 28 H 1.08992 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46749 * 299.99535 * 1 2 3 30 30 H 1.09003 * 109.46818 * 59.99502 * 1 2 3 31 31 H 1.09002 * 109.46592 * 60.00271 * 3 2 1 32 32 H 1.08994 * 109.47561 * 300.00322 * 3 2 1 33 33 H 1.08999 * 109.47088 * 305.00265 * 4 3 2 34 34 H 1.09002 * 109.47245 * 185.00751 * 4 3 2 35 35 H 1.08999 * 109.46659 * 336.75932 * 6 5 4 36 36 H 1.08997 * 109.46694 * 216.76182 * 6 5 4 37 37 H 0.96998 * 120.00104 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.68440 * 295.30158 * 19 17 15 39 39 H 1.09001 * 109.68353 * 55.82432 * 19 17 15 40 40 H 1.07997 * 119.89088 * 359.81997 * 22 21 20 41 41 H 1.07999 * 120.02032 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.01365 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.84150 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.46981 * 222.13146 * 27 26 21 45 45 H 1.08998 * 109.41301 * 102.25219 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5646 -1.2528 6 6 4.2689 1.3996 -2.4203 7 6 5.7514 1.6605 -2.4917 8 1 6.3310 1.2616 -3.3111 9 6 6.3667 2.4134 -1.5142 10 7 5.6410 3.0719 -0.6371 11 14 8.2311 2.4981 -1.4357 12 1 8.8105 1.6748 -2.5274 13 1 8.6697 3.9079 -1.5935 14 1 8.6953 1.9790 -0.1241 15 6 4.1110 -0.7741 -1.3307 16 8 3.7372 -1.4757 -0.4147 17 6 4.7267 -1.3993 -2.5558 18 1 5.2848 -0.6458 -3.1117 19 6 3.6244 -1.9874 -3.4458 20 8 4.2272 -2.4789 -4.6438 21 6 5.3164 -3.2816 -4.5234 22 6 5.6964 -4.0537 -5.6168 23 6 6.7994 -4.8784 -5.5347 24 6 7.5311 -4.9385 -4.3627 25 6 7.1560 -4.1745 -3.2751 26 6 6.0484 -3.3465 -3.3509 27 6 5.6658 -2.5341 -2.1395 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.8515 0.5682 0.8409 34 1 3.9786 2.1766 0.0891 35 1 3.7369 2.3469 -2.3322 36 1 3.9465 0.8847 -3.3253 37 1 6.0739 3.6013 0.0508 38 1 3.1273 -2.8045 -2.9231 39 1 2.8979 -1.2126 -3.6909 40 1 5.1263 -4.0070 -6.5329 41 1 7.0914 -5.4766 -6.3852 42 1 8.3949 -5.5835 -4.2977 43 1 7.7293 -4.2229 -2.3610 44 1 6.5634 -2.1141 -1.6855 45 1 5.1613 -3.1760 -1.4174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110512997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:02 Heat of formation + Delta-G solvation = -94.622224 kcal Electronic energy + Delta-G solvation = -28128.355232 eV Core-core repulsion = 24304.187811 eV Total energy + Delta-G solvation = -3824.167421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.57858 -38.79744 -37.30765 -36.98833 -34.90999 -33.74410 -32.32889 -30.76437 -30.07602 -29.31526 -27.06738 -25.83913 -25.46353 -24.09001 -22.97869 -22.41694 -21.80390 -19.88915 -18.13326 -17.60508 -17.10642 -16.12955 -15.94890 -15.92072 -15.58435 -15.11680 -14.96732 -14.66548 -14.50971 -14.27379 -14.06647 -13.59312 -13.36788 -13.15426 -12.95268 -12.78180 -12.47412 -12.34814 -11.92073 -11.83713 -11.56797 -11.37055 -11.18171 -11.05353 -10.94094 -10.92376 -10.71826 -10.45165 -10.31858 -10.18217 -9.90542 -9.69167 -9.15841 -8.76136 -8.65252 -8.54885 -7.95137 -7.27868 -6.34145 -4.39932 1.47419 1.59117 3.14843 3.25609 3.29735 3.48242 3.63838 3.91256 4.19858 4.22681 4.43919 4.90850 4.93864 5.06693 5.11984 5.18942 5.29108 5.45962 5.54245 5.55880 5.60169 5.64226 5.67142 5.85508 5.86508 5.90138 5.93261 5.97626 6.02174 6.13627 6.16236 6.38014 6.44896 6.54627 6.57814 6.63573 6.70018 6.73087 6.94208 7.06720 7.14738 7.65931 7.68179 7.71132 7.89475 7.97849 8.51487 8.86627 9.31674 9.35144 10.71674 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010244 B = 0.005478 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.552509 B = 5110.243569 C = 7052.751606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.045 3.955 4 C 0.108 3.892 5 N -0.571 5.571 6 C 0.225 3.775 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.081 3.919 10 N -0.879 5.879 11 Si 0.892 3.108 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.281 1.281 15 C 0.521 3.479 16 O -0.560 6.560 17 C -0.147 4.147 18 H 0.122 0.878 19 C 0.081 3.919 20 O -0.314 6.314 21 C 0.134 3.866 22 C -0.152 4.152 23 C -0.096 4.096 24 C -0.157 4.157 25 C -0.085 4.085 26 C -0.145 4.145 27 C -0.063 4.063 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.144 0.856 35 H 0.047 0.953 36 H 0.027 0.973 37 H 0.266 0.734 38 H 0.068 0.932 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.083 0.917 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.863 -8.413 -4.321 9.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.032 4.032 4 C -0.016 4.016 5 N -0.301 5.301 6 C 0.105 3.895 7 C -0.577 4.577 8 H 0.081 0.919 9 C -0.123 4.123 10 N -0.516 5.516 11 Si 0.719 3.281 12 H -0.194 1.194 13 H -0.208 1.208 14 H -0.207 1.207 15 C 0.307 3.693 16 O -0.440 6.440 17 C -0.168 4.168 18 H 0.140 0.860 19 C 0.005 3.995 20 O -0.227 6.227 21 C 0.089 3.911 22 C -0.171 4.171 23 C -0.114 4.114 24 C -0.175 4.175 25 C -0.104 4.104 26 C -0.146 4.146 27 C -0.100 4.100 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.161 0.839 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.126 0.874 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.102 0.898 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.038 -8.701 -3.881 10.000 hybrid contribution 0.883 0.531 0.396 1.103 sum -2.155 -8.170 -3.485 9.140 Atomic orbital electron populations 1.22640 0.83365 1.01711 0.98921 1.88187 1.17501 1.27904 1.95085 1.23209 0.96646 0.84418 0.98973 1.22125 0.89499 1.02913 0.87028 1.48577 1.62976 1.05046 1.13478 1.19341 0.96146 0.91041 0.82927 1.21526 0.93840 1.32830 1.09454 0.91944 1.24932 0.98639 0.93515 0.95246 1.69539 1.35368 1.29186 1.17534 0.86537 0.85213 0.77978 0.78374 1.19444 1.20802 1.20697 1.19840 0.78771 0.83123 0.87546 1.90598 1.50850 1.61911 1.40631 1.22045 0.97961 0.99266 0.97571 0.86021 1.22817 0.94015 0.98739 0.83908 1.85977 1.41131 1.62038 1.33584 1.18749 0.87563 0.90961 0.93852 1.20548 0.99856 0.98413 0.98252 1.20837 0.94601 0.98125 0.97812 1.20951 1.01098 1.01767 0.93708 1.20910 0.95516 0.95237 0.98688 1.19967 0.97596 1.01250 0.95806 1.20365 0.99856 0.95191 0.94618 0.90540 0.95026 0.94981 0.93946 0.93872 0.92112 0.83888 0.93472 0.95484 0.92373 0.91423 0.87443 0.85509 0.85841 0.86230 0.85923 0.89847 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -7.21 9.27 -48.79 -0.45 -7.66 16 3 C 0.05 0.85 6.28 37.16 0.23 1.08 16 4 C 0.11 2.33 5.55 -4.04 -0.02 2.31 16 5 N -0.57 -12.69 2.40 -175.06 -0.42 -13.11 16 6 C 0.22 5.05 4.98 -5.19 -0.03 5.02 16 7 C -0.54 -13.19 8.15 -34.44 -0.28 -13.47 16 8 H 0.06 1.54 7.57 -52.48 -0.40 1.15 16 9 C 0.08 2.01 5.38 -17.82 -0.10 1.91 16 10 N -0.88 -21.93 10.23 55.43 0.57 -21.36 16 11 Si 0.89 19.89 29.55 -169.99 -5.02 14.86 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.52 11.45 6.27 -10.99 -0.07 11.38 16 16 O -0.56 -13.51 14.75 -8.00 -0.12 -13.63 16 17 C -0.15 -2.83 1.96 -91.52 -0.18 -3.01 16 18 H 0.12 2.53 5.30 -51.93 -0.28 2.26 16 19 C 0.08 1.38 6.30 37.37 0.24 1.62 16 20 O -0.31 -5.38 10.27 -19.24 -0.20 -5.57 16 21 C 0.13 2.21 6.47 -39.19 -0.25 1.96 16 22 C -0.15 -2.13 9.94 -39.35 -0.39 -2.52 16 23 C -0.10 -1.16 10.04 -39.66 -0.40 -1.56 16 24 C -0.16 -1.95 10.04 -39.61 -0.40 -2.35 16 25 C -0.09 -1.22 9.67 -39.53 -0.38 -1.60 16 26 C -0.15 -2.39 5.75 -104.43 -0.60 -2.99 16 27 C -0.06 -1.13 5.10 -27.80 -0.14 -1.27 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.41 7.52 -51.93 -0.39 1.02 16 34 H 0.14 3.27 5.11 -51.93 -0.27 3.00 16 35 H 0.05 1.10 7.94 -51.93 -0.41 0.69 16 36 H 0.03 0.56 7.01 -51.93 -0.36 0.20 16 37 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.11 1.73 8.04 -51.93 -0.42 1.32 16 40 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 44 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.09 1.61 7.49 -51.93 -0.39 1.22 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -28.23 364.20 -8.51 -36.74 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.70 Total: 6.18 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.66 Total: -1.94 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.15 Total: -34.47 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.77 Total: -26.87 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.23 -8.51 -36.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110512997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.883 kcal (2) G-P(sol) polarization free energy of solvation -28.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds