Wall clock time and date at job start Tue Mar 31 2020 12:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42904 * 113.99802 * 2 1 4 4 C 1.53000 * 109.46972 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47009 * 65.00376 * 4 3 2 6 6 C 1.46506 * 120.00083 * 89.16969 * 5 4 3 7 7 C 1.50700 * 109.46827 * 96.75981 * 6 5 4 8 8 H 1.08006 * 119.99436 * 114.20953 * 7 6 5 9 9 C 1.37874 * 120.00129 * 293.92329 * 7 6 5 10 10 N 1.31511 * 120.00215 * 349.62844 * 9 7 6 11 11 Si 1.86800 * 119.99806 * 169.62161 * 9 7 6 12 12 H 1.48507 * 109.47201 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47140 * 120.00302 * 11 9 7 14 14 H 1.48497 * 109.47114 * 240.00641 * 11 9 7 15 15 C 1.34779 * 120.00056 * 269.16844 * 5 4 3 16 16 O 1.21281 * 119.99777 * 7.69037 * 15 5 4 17 17 C 1.50699 * 120.00074 * 187.69351 * 15 5 4 18 18 H 1.09001 * 109.69548 * 18.26639 * 17 15 5 19 19 C 1.53401 * 109.70077 * 257.70285 * 17 15 5 20 20 O 1.42833 * 108.37602 * 175.58125 * 19 17 15 21 21 C 1.35841 * 117.86411 * 49.18258 * 20 19 17 22 22 C 1.39146 * 118.50569 * 162.82588 * 21 20 19 23 23 C 1.37962 * 120.21663 * 179.80044 * 22 21 20 24 24 C 1.38292 * 119.96156 * 359.97438 * 23 22 21 25 25 C 1.38105 * 119.97865 * 0.08495 * 24 23 22 26 26 C 1.38373 * 121.80212 * 342.76398 * 21 20 19 27 27 C 1.50793 * 121.41806 * 0.48758 * 26 21 20 28 28 H 1.08992 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46749 * 299.99535 * 1 2 3 30 30 H 1.09003 * 109.46818 * 59.99502 * 1 2 3 31 31 H 1.09002 * 109.46592 * 60.00271 * 3 2 1 32 32 H 1.08994 * 109.47561 * 300.00322 * 3 2 1 33 33 H 1.08999 * 109.47088 * 305.00265 * 4 3 2 34 34 H 1.09002 * 109.47245 * 185.00751 * 4 3 2 35 35 H 1.08999 * 109.46659 * 336.75932 * 6 5 4 36 36 H 1.08997 * 109.46694 * 216.76182 * 6 5 4 37 37 H 0.96998 * 120.00104 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.68440 * 295.30158 * 19 17 15 39 39 H 1.09001 * 109.68353 * 55.82432 * 19 17 15 40 40 H 1.07997 * 119.89088 * 359.81997 * 22 21 20 41 41 H 1.07999 * 120.02032 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.01365 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.84150 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.46981 * 222.13146 * 27 26 21 45 45 H 1.08998 * 109.41301 * 102.25219 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5646 -1.2528 6 6 4.2689 1.3996 -2.4203 7 6 5.7514 1.6605 -2.4917 8 1 6.3310 1.2616 -3.3111 9 6 6.3667 2.4134 -1.5142 10 7 5.6410 3.0719 -0.6371 11 14 8.2311 2.4981 -1.4357 12 1 8.8105 1.6748 -2.5274 13 1 8.6697 3.9079 -1.5935 14 1 8.6953 1.9790 -0.1241 15 6 4.1110 -0.7741 -1.3307 16 8 3.7372 -1.4757 -0.4147 17 6 4.7267 -1.3993 -2.5558 18 1 5.2848 -0.6458 -3.1117 19 6 3.6244 -1.9874 -3.4458 20 8 4.2272 -2.4789 -4.6438 21 6 5.3164 -3.2816 -4.5234 22 6 5.6964 -4.0537 -5.6168 23 6 6.7994 -4.8784 -5.5347 24 6 7.5311 -4.9385 -4.3627 25 6 7.1560 -4.1745 -3.2751 26 6 6.0484 -3.3465 -3.3509 27 6 5.6658 -2.5341 -2.1395 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.8515 0.5682 0.8409 34 1 3.9786 2.1766 0.0891 35 1 3.7369 2.3469 -2.3322 36 1 3.9465 0.8847 -3.3253 37 1 6.0739 3.6013 0.0508 38 1 3.1273 -2.8045 -2.9231 39 1 2.8979 -1.2126 -3.6909 40 1 5.1263 -4.0070 -6.5329 41 1 7.0914 -5.4766 -6.3852 42 1 8.3949 -5.5835 -4.2977 43 1 7.7293 -4.2229 -2.3610 44 1 6.5634 -2.1141 -1.6855 45 1 5.1613 -3.1760 -1.4174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110512997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:01 Heat of formation + Delta-G solvation = -109.017218 kcal Electronic energy + Delta-G solvation = -28128.979445 eV Core-core repulsion = 24304.187811 eV Total energy + Delta-G solvation = -3824.791634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.90215 -40.40132 -38.63795 -38.29404 -36.70520 -35.15239 -34.20141 -32.10896 -31.21228 -30.80984 -28.83621 -27.14443 -26.77660 -25.50977 -24.82166 -23.61228 -23.20062 -21.27387 -19.79575 -18.93819 -18.68303 -17.64940 -17.51019 -17.31098 -17.04152 -16.73665 -16.29784 -16.20454 -16.03205 -15.56127 -15.43060 -14.94743 -14.72781 -14.63763 -14.33275 -14.18923 -14.10108 -13.70865 -13.70172 -13.30983 -12.99243 -12.75817 -12.69002 -12.66639 -12.54334 -12.34146 -12.02725 -11.97558 -11.79955 -11.66372 -11.57425 -11.53400 -10.67048 -10.53931 -10.36843 -9.71024 -9.13115 -9.05989 -8.24647 -6.34636 0.38909 0.49590 1.35391 1.42570 1.50260 1.87860 2.24187 2.36852 2.52300 2.83583 3.05385 3.14183 3.61706 3.71872 3.77306 3.90647 4.09000 4.20585 4.25173 4.30736 4.32126 4.40770 4.46605 4.51806 4.54469 4.56490 4.60626 4.63780 4.74361 4.80716 4.81535 4.93805 4.99823 5.03593 5.12368 5.23392 5.33765 5.38594 5.55777 5.61459 5.77307 5.89637 6.04674 6.09513 6.40661 6.43690 6.62087 7.05431 7.37856 7.59045 8.79995 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010244 B = 0.005478 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.552509 B = 5110.243569 C = 7052.751606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.055 3.945 4 C 0.108 3.892 5 N -0.574 5.574 6 C 0.233 3.767 7 C -0.550 4.550 8 H 0.056 0.944 9 C 0.044 3.956 10 N -0.892 5.892 11 Si 0.940 3.060 12 H -0.271 1.271 13 H -0.276 1.276 14 H -0.287 1.287 15 C 0.517 3.483 16 O -0.585 6.585 17 C -0.140 4.140 18 H 0.105 0.895 19 C 0.090 3.910 20 O -0.320 6.320 21 C 0.104 3.896 22 C -0.157 4.157 23 C -0.086 4.086 24 C -0.150 4.150 25 C -0.096 4.096 26 C -0.168 4.168 27 C -0.056 4.056 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.132 0.868 35 H 0.037 0.963 36 H 0.040 0.960 37 H 0.268 0.732 38 H 0.067 0.933 39 H 0.115 0.885 40 H 0.143 0.857 41 H 0.162 0.838 42 H 0.153 0.847 43 H 0.133 0.867 44 H 0.072 0.928 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.359 -9.697 -5.704 11.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.023 4.023 4 C -0.015 4.015 5 N -0.303 5.303 6 C 0.114 3.886 7 C -0.589 4.589 8 H 0.074 0.926 9 C -0.158 4.158 10 N -0.529 5.529 11 Si 0.767 3.233 12 H -0.196 1.196 13 H -0.201 1.201 14 H -0.213 1.213 15 C 0.305 3.695 16 O -0.467 6.467 17 C -0.161 4.161 18 H 0.123 0.877 19 C 0.014 3.986 20 O -0.234 6.234 21 C 0.059 3.941 22 C -0.175 4.175 23 C -0.104 4.104 24 C -0.168 4.168 25 C -0.114 4.114 26 C -0.169 4.169 27 C -0.093 4.093 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.149 0.851 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.161 0.839 41 H 0.180 0.820 42 H 0.171 0.829 43 H 0.151 0.849 44 H 0.090 0.910 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.539 -9.975 -5.274 11.565 hybrid contribution 0.741 0.860 0.807 1.393 sum -1.798 -9.114 -4.467 10.308 Atomic orbital electron populations 1.22852 0.80787 1.02986 1.00422 1.88128 1.20380 1.28161 1.95376 1.23013 0.94404 0.84636 1.00214 1.22013 0.91959 1.01491 0.86075 1.48560 1.62940 1.05262 1.13522 1.19203 0.95121 0.90769 0.83529 1.21677 0.94834 1.32919 1.09449 0.92594 1.25476 1.01525 0.93573 0.95261 1.69618 1.36253 1.29367 1.17706 0.85781 0.81780 0.78012 0.77752 1.19567 1.20131 1.21271 1.20253 0.78293 0.82874 0.88080 1.90572 1.52034 1.62321 1.41767 1.21929 0.98608 0.99184 0.96392 0.87676 1.22698 0.93313 0.98788 0.83798 1.85954 1.41760 1.62632 1.33041 1.19114 0.87831 0.92185 0.94940 1.20886 1.00617 0.98025 0.98010 1.21319 0.93151 0.97080 0.98844 1.21377 1.01640 1.00908 0.92871 1.21158 0.94965 0.95167 1.00117 1.19936 0.99206 1.02516 0.95257 1.20229 0.98869 0.94766 0.95477 0.89473 0.93175 0.93718 0.91755 0.93395 0.94411 0.85076 0.94488 0.94138 0.92248 0.91477 0.86696 0.83899 0.82026 0.82937 0.84871 0.90971 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -15.59 9.27 -136.01 -1.26 -16.85 16 3 C 0.05 2.04 6.28 71.98 0.45 2.49 16 4 C 0.11 4.79 5.55 86.38 0.48 5.27 16 5 N -0.57 -26.11 2.40 -826.15 -1.98 -28.09 16 6 C 0.23 10.66 4.98 85.63 0.43 11.09 16 7 C -0.55 -27.36 8.15 25.60 0.21 -27.15 16 8 H 0.06 2.81 7.57 -2.91 -0.02 2.78 16 9 C 0.04 2.22 5.38 84.65 0.46 2.68 16 10 N -0.89 -44.99 10.23 21.45 0.22 -44.77 16 11 Si 0.94 41.01 29.55 68.60 2.03 43.04 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 14 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 15 C 0.52 23.41 6.27 87.66 0.55 23.96 16 16 O -0.58 -29.12 14.75 9.93 0.15 -28.97 16 17 C -0.14 -5.53 1.96 -11.38 -0.02 -5.55 16 18 H 0.11 4.51 5.30 -2.39 -0.01 4.50 16 19 C 0.09 3.11 6.30 72.12 0.45 3.57 16 20 O -0.32 -10.92 10.27 -91.77 -0.94 -11.86 16 21 C 0.10 3.36 6.47 22.52 0.15 3.50 16 22 C -0.16 -4.03 9.94 22.42 0.22 -3.81 16 23 C -0.09 -1.77 10.04 22.22 0.22 -1.55 16 24 C -0.15 -3.22 10.04 22.25 0.22 -3.00 16 25 C -0.10 -2.60 9.67 22.30 0.22 -2.38 16 26 C -0.17 -5.52 5.75 -19.74 -0.11 -5.63 16 27 C -0.06 -2.07 5.10 29.90 0.15 -1.92 16 28 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.04 1.81 7.52 -2.39 -0.02 1.79 16 34 H 0.13 6.15 5.11 -2.39 -0.01 6.14 16 35 H 0.04 1.75 7.94 -2.39 -0.02 1.74 16 36 H 0.04 1.71 7.01 -2.39 -0.02 1.69 16 37 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.12 3.73 8.04 -2.39 -0.02 3.71 16 40 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 41 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 43 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 44 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 45 H 0.08 2.96 7.49 -2.39 -0.02 2.94 16 Total: -1.00 -61.22 364.20 4.51 -56.71 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.98 Total: 27.26 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.32 Total: 3.54 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -1.76 Total: -72.86 kcal Atomic # 8 Polarization: -55.63 SS G_CDS: -2.06 Total: -57.69 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -61.22 4.51 -56.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110512997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.306 kcal (2) G-P(sol) polarization free energy of solvation -61.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds