Wall clock time and date at job start Tue Mar 31 2020 12:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99278 * 2 1 4 4 H 1.08997 * 109.49914 * 29.99924 * 3 2 1 5 5 C 1.53048 * 109.49446 * 150.06388 * 3 2 1 6 6 C 1.53040 * 109.53808 * 181.31523 * 5 3 2 7 7 C 1.53192 * 109.31070 * 298.63326 * 6 5 3 8 8 N 1.46933 * 108.77717 * 54.63363 * 7 6 5 9 9 C 1.34769 * 120.62973 * 126.43091 * 8 7 6 10 10 O 1.21277 * 120.00264 * 179.97438 * 9 8 7 11 11 C 1.50704 * 119.99827 * 0.02562 * 9 8 7 12 12 C 1.50711 * 109.46940 * 179.97438 * 11 9 8 13 13 C 1.38307 * 119.92813 * 269.72686 * 12 11 9 14 14 C 1.38099 * 120.06768 * 179.72731 * 13 12 11 15 15 C 1.38884 * 119.92593 * 0.54405 * 14 13 12 16 16 O 1.35751 * 120.06371 * 179.75203 * 15 14 13 17 17 C 1.34827 * 117.00005 * 174.44545 * 16 15 14 18 18 H 1.08004 * 119.99781 * 5.04765 * 17 16 15 19 19 C 1.38647 * 120.00409 * 185.05916 * 17 16 15 20 20 N 1.31565 * 119.99766 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00317 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46895 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47265 * 119.99784 * 21 19 17 24 24 H 1.48498 * 109.47150 * 239.99498 * 21 19 17 25 25 C 1.38876 * 119.86463 * 359.72831 * 15 14 13 26 26 C 1.38099 * 119.93170 * 359.97438 * 25 15 14 27 27 C 1.46931 * 118.76600 * 306.41396 * 8 7 6 28 28 H 1.09002 * 109.46559 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47648 * 299.99868 * 1 2 3 30 30 H 1.08998 * 109.47179 * 60.00657 * 1 2 3 31 31 H 1.09004 * 109.45623 * 301.33298 * 5 3 2 32 32 H 1.09001 * 109.46059 * 61.28962 * 5 3 2 33 33 H 1.08997 * 109.49815 * 58.58120 * 6 5 3 34 34 H 1.08993 * 109.49416 * 178.65314 * 6 5 3 35 35 H 1.08993 * 109.58870 * 174.42568 * 7 6 5 36 36 H 1.09003 * 109.58727 * 294.84909 * 7 6 5 37 37 H 1.08996 * 109.47193 * 299.99588 * 11 9 8 38 38 H 1.08994 * 109.47570 * 60.00005 * 11 9 8 39 39 H 1.08004 * 119.96321 * 359.97438 * 13 12 11 40 40 H 1.07993 * 120.03724 * 180.26994 * 14 13 12 41 41 H 0.96999 * 119.99442 * 180.02562 * 20 19 17 42 42 H 1.08003 * 120.03542 * 180.02562 * 25 15 14 43 43 H 1.08003 * 119.96655 * 179.97438 * 26 25 15 44 44 H 1.08996 * 109.56040 * 293.78672 * 27 8 7 45 45 H 1.08999 * 109.61809 * 173.35542 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3451 1.9998 0.5137 5 6 3.3600 1.2638 0.7200 6 6 3.9681 2.6679 0.7493 7 6 4.2005 3.1494 -0.6863 8 7 2.9354 3.0550 -1.4275 9 6 2.4405 4.1252 -2.0802 10 8 1.3955 4.0344 -2.6888 11 6 3.1865 5.4344 -2.0549 12 6 2.4270 6.4609 -2.8555 13 6 2.6845 6.6112 -4.2060 14 6 1.9863 7.5470 -4.9436 15 6 1.0327 8.3453 -4.3253 16 8 0.3483 9.2695 -5.0466 17 6 -0.6418 9.9299 -4.4130 18 1 -0.8061 9.7730 -3.3571 19 6 -1.4491 10.8104 -5.1168 20 7 -1.2487 11.0018 -6.4030 21 14 -2.8212 11.7249 -4.2390 22 1 -2.8376 11.3358 -2.8060 23 1 -2.5928 13.1878 -4.3527 24 1 -4.1243 11.3776 -4.8607 25 6 0.7804 8.1957 -2.9679 26 6 1.4776 7.2539 -2.2371 27 6 2.2196 1.7719 -1.4441 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.2164 0.9089 1.7406 32 1 4.0325 0.5877 0.1919 33 1 3.2849 3.3497 1.2556 34 1 4.9181 2.6418 1.2830 35 1 4.5404 4.1849 -0.6739 36 1 4.9522 2.5217 -1.1651 37 1 3.2848 5.7767 -1.0248 38 1 4.1771 5.2967 -2.4881 39 1 3.4296 5.9934 -4.6851 40 1 2.1847 7.6610 -5.9990 41 1 -1.8133 11.6180 -6.8952 42 1 0.0391 8.8148 -2.4844 43 1 1.2822 7.1375 -1.1813 44 1 2.8095 1.0320 -1.9851 45 1 1.2527 1.8985 -1.9311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110700097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:57 Heat of formation + Delta-G solvation = -84.254367 kcal Electronic energy + Delta-G solvation = -26322.886131 eV Core-core repulsion = 22499.168295 eV Total energy + Delta-G solvation = -3823.717837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46414 -39.06393 -38.41398 -36.76874 -36.28679 -32.88037 -32.43880 -31.61973 -30.42215 -30.10522 -27.25321 -26.56449 -25.51861 -24.81480 -23.14236 -21.93950 -21.50812 -20.51178 -19.05494 -17.94208 -17.38060 -16.93634 -16.65457 -16.31342 -15.74582 -15.39991 -15.14114 -14.59964 -14.48291 -14.35752 -14.12973 -13.87671 -13.59757 -13.42196 -13.33849 -13.19063 -13.00385 -12.67184 -12.47359 -12.22674 -11.84448 -11.64691 -11.50381 -11.44474 -11.34687 -11.23498 -10.92040 -10.81755 -10.69898 -10.56497 -10.39447 -10.10639 -9.67114 -9.28560 -8.79044 -8.75764 -8.11104 -7.12430 -6.41449 -3.99901 2.27023 2.29262 2.71107 2.83533 3.14523 3.16316 3.21654 3.45646 3.99782 4.32603 4.43686 4.51234 4.56885 4.65429 4.82015 4.88867 5.03492 5.06121 5.09796 5.11919 5.17861 5.26489 5.28655 5.35347 5.37228 5.41764 5.45892 5.52048 5.59225 5.66785 5.75479 5.78086 5.82357 5.88655 6.24853 6.27956 6.45724 6.74055 6.84235 6.95210 7.09293 7.26938 7.31336 7.40803 7.48877 7.87869 8.04106 8.26128 9.04468 9.75374 10.76864 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.002483 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.155256 B =11274.761854 C =11910.775695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.383 6.383 3 C 0.076 3.924 4 H 0.065 0.935 5 C -0.116 4.116 6 C -0.134 4.134 7 C 0.105 3.895 8 N -0.620 5.620 9 C 0.512 3.488 10 O -0.519 6.519 11 C -0.077 4.077 12 C -0.171 4.171 13 C -0.059 4.059 14 C -0.191 4.191 15 C 0.157 3.843 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.232 4.232 26 C -0.056 4.056 27 C 0.092 3.908 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.117 0.883 41 H 0.269 0.731 42 H 0.126 0.874 43 H 0.103 0.897 44 H 0.072 0.928 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.843 -18.172 15.640 26.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.301 6.301 3 C 0.017 3.983 4 H 0.083 0.917 5 C -0.154 4.154 6 C -0.172 4.172 7 C -0.018 4.018 8 N -0.357 5.357 9 C 0.301 3.699 10 O -0.392 6.392 11 C -0.117 4.117 12 C -0.172 4.172 13 C -0.078 4.078 14 C -0.210 4.210 15 C 0.103 3.897 16 O -0.082 6.082 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.251 4.251 26 C -0.075 4.075 27 C -0.032 4.032 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.126 0.874 40 H 0.135 0.865 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.121 0.879 44 H 0.090 0.910 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.270 -18.157 14.869 25.616 hybrid contribution -0.945 0.549 0.534 1.216 sum 9.325 -17.608 15.403 25.184 Atomic orbital electron populations 1.22845 0.80668 1.02849 1.00447 1.87887 1.20022 1.27183 1.95014 1.22482 0.95372 0.84785 0.95668 0.91734 1.21583 0.95286 0.97386 1.01096 1.21926 1.01950 0.96431 0.96880 1.21792 0.85668 1.02896 0.91489 1.48150 1.23881 1.10744 1.52963 1.21123 0.85773 0.85064 0.77932 1.90736 1.23094 1.83820 1.41597 1.20438 0.98858 0.90894 1.01528 1.18648 1.03199 1.01098 0.94265 1.20399 0.98073 0.96456 0.92839 1.20156 1.01010 1.00027 0.99830 1.19380 0.91429 0.88485 0.90400 1.83977 1.42406 1.43887 1.37944 1.21374 1.08527 1.22180 0.94553 0.89052 1.25288 0.98296 0.97290 0.95711 1.70056 1.38248 1.34510 1.07054 0.85648 0.79760 0.78951 0.79069 1.19120 1.20168 1.20163 1.21100 1.05570 1.04014 0.94465 1.20491 0.94369 0.94512 0.98109 1.21956 0.99235 0.85094 0.96879 0.89465 0.93928 0.93584 0.90972 0.90810 0.91146 0.89826 0.89019 0.91132 0.89020 0.88939 0.87399 0.86536 0.92122 0.85601 0.87918 0.90993 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.32 16 2 O -0.38 -3.81 10.35 -35.23 -0.36 -4.18 16 3 C 0.08 0.70 2.76 -26.61 -0.07 0.62 16 4 H 0.06 0.63 7.79 -51.93 -0.40 0.22 16 5 C -0.12 -0.81 5.54 -26.69 -0.15 -0.96 16 6 C -0.13 -0.77 6.08 -26.61 -0.16 -0.93 16 7 C 0.10 0.72 6.34 -3.71 -0.02 0.69 16 8 N -0.62 -6.68 2.97 -172.76 -0.51 -7.19 16 9 C 0.51 7.35 7.69 -10.99 -0.08 7.26 16 10 O -0.52 -10.01 15.45 5.56 0.09 -9.93 16 11 C -0.08 -0.98 4.18 -29.03 -0.12 -1.10 16 12 C -0.17 -3.02 4.38 -104.57 -0.46 -3.47 16 13 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 14 C -0.19 -4.23 9.99 -39.39 -0.39 -4.63 16 15 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 16 O -0.18 -5.25 9.76 0.05 0.00 -5.25 16 17 C -0.39 -11.18 9.49 30.88 0.29 -10.89 16 18 H 0.09 2.44 5.20 -52.48 -0.27 2.16 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -25.82 13.67 55.48 0.76 -25.06 16 21 Si 0.94 20.96 29.55 -169.99 -5.02 15.93 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 C -0.23 -5.27 9.17 -39.40 -0.36 -5.63 16 26 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 27 C 0.09 0.99 6.05 -3.71 -0.02 0.97 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.05 0.39 8.03 -51.93 -0.42 -0.03 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.52 5.93 -51.93 -0.31 0.21 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.94 7.63 -51.93 -0.40 0.54 16 38 H 0.09 0.94 7.88 -51.93 -0.41 0.53 16 39 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 40 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.13 2.85 5.64 -52.48 -0.30 2.56 16 43 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.09 1.21 6.89 -51.93 -0.36 0.85 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -34.93 369.64 -7.72 -42.65 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.64 Total: 2.51 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -1.58 Total: -15.05 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.25 Total: -32.25 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.28 Total: -19.36 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.93 -7.72 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110700097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.606 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds