Wall clock time and date at job start Tue Mar 31 2020 12:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99278 * 2 1 4 4 H 1.08997 * 109.49914 * 29.99924 * 3 2 1 5 5 C 1.53048 * 109.49446 * 150.06388 * 3 2 1 6 6 C 1.53040 * 109.53808 * 181.31523 * 5 3 2 7 7 C 1.53192 * 109.31070 * 298.63326 * 6 5 3 8 8 N 1.46933 * 108.77717 * 54.63363 * 7 6 5 9 9 C 1.34769 * 120.62973 * 126.43091 * 8 7 6 10 10 O 1.21277 * 120.00264 * 179.97438 * 9 8 7 11 11 C 1.50704 * 119.99827 * 0.02562 * 9 8 7 12 12 C 1.50711 * 109.46940 * 179.97438 * 11 9 8 13 13 C 1.38307 * 119.92813 * 269.72686 * 12 11 9 14 14 C 1.38099 * 120.06768 * 179.72731 * 13 12 11 15 15 C 1.38884 * 119.92593 * 0.54405 * 14 13 12 16 16 O 1.35751 * 120.06371 * 179.75203 * 15 14 13 17 17 C 1.34827 * 117.00005 * 174.44545 * 16 15 14 18 18 H 1.08004 * 119.99781 * 5.04765 * 17 16 15 19 19 C 1.38647 * 120.00409 * 185.05916 * 17 16 15 20 20 N 1.31565 * 119.99766 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00317 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46895 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47265 * 119.99784 * 21 19 17 24 24 H 1.48498 * 109.47150 * 239.99498 * 21 19 17 25 25 C 1.38876 * 119.86463 * 359.72831 * 15 14 13 26 26 C 1.38099 * 119.93170 * 359.97438 * 25 15 14 27 27 C 1.46931 * 118.76600 * 306.41396 * 8 7 6 28 28 H 1.09002 * 109.46559 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47648 * 299.99868 * 1 2 3 30 30 H 1.08998 * 109.47179 * 60.00657 * 1 2 3 31 31 H 1.09004 * 109.45623 * 301.33298 * 5 3 2 32 32 H 1.09001 * 109.46059 * 61.28962 * 5 3 2 33 33 H 1.08997 * 109.49815 * 58.58120 * 6 5 3 34 34 H 1.08993 * 109.49416 * 178.65314 * 6 5 3 35 35 H 1.08993 * 109.58870 * 174.42568 * 7 6 5 36 36 H 1.09003 * 109.58727 * 294.84909 * 7 6 5 37 37 H 1.08996 * 109.47193 * 299.99588 * 11 9 8 38 38 H 1.08994 * 109.47570 * 60.00005 * 11 9 8 39 39 H 1.08004 * 119.96321 * 359.97438 * 13 12 11 40 40 H 1.07993 * 120.03724 * 180.26994 * 14 13 12 41 41 H 0.96999 * 119.99442 * 180.02562 * 20 19 17 42 42 H 1.08003 * 120.03542 * 180.02562 * 25 15 14 43 43 H 1.08003 * 119.96655 * 179.97438 * 26 25 15 44 44 H 1.08996 * 109.56040 * 293.78672 * 27 8 7 45 45 H 1.08999 * 109.61809 * 173.35542 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3451 1.9998 0.5137 5 6 3.3600 1.2638 0.7200 6 6 3.9681 2.6679 0.7493 7 6 4.2005 3.1494 -0.6863 8 7 2.9354 3.0550 -1.4275 9 6 2.4405 4.1252 -2.0802 10 8 1.3955 4.0344 -2.6888 11 6 3.1865 5.4344 -2.0549 12 6 2.4270 6.4609 -2.8555 13 6 2.6845 6.6112 -4.2060 14 6 1.9863 7.5470 -4.9436 15 6 1.0327 8.3453 -4.3253 16 8 0.3483 9.2695 -5.0466 17 6 -0.6418 9.9299 -4.4130 18 1 -0.8061 9.7730 -3.3571 19 6 -1.4491 10.8104 -5.1168 20 7 -1.2487 11.0018 -6.4030 21 14 -2.8212 11.7249 -4.2390 22 1 -2.8376 11.3358 -2.8060 23 1 -2.5928 13.1878 -4.3527 24 1 -4.1243 11.3776 -4.8607 25 6 0.7804 8.1957 -2.9679 26 6 1.4776 7.2539 -2.2371 27 6 2.2196 1.7719 -1.4441 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.2164 0.9089 1.7406 32 1 4.0325 0.5877 0.1919 33 1 3.2849 3.3497 1.2556 34 1 4.9181 2.6418 1.2830 35 1 4.5404 4.1849 -0.6739 36 1 4.9522 2.5217 -1.1651 37 1 3.2848 5.7767 -1.0248 38 1 4.1771 5.2967 -2.4881 39 1 3.4296 5.9934 -4.6851 40 1 2.1847 7.6610 -5.9990 41 1 -1.8133 11.6180 -6.8952 42 1 0.0391 8.8148 -2.4844 43 1 1.2822 7.1375 -1.1813 44 1 2.8095 1.0320 -1.9851 45 1 1.2527 1.8985 -1.9311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110700097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:56 Heat of formation + Delta-G solvation = -107.638601 kcal Electronic energy + Delta-G solvation = -26323.900148 eV Core-core repulsion = 22499.168295 eV Total energy + Delta-G solvation = -3824.731853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45045 -40.66243 -39.46100 -38.21594 -37.36513 -34.41650 -33.68262 -32.88992 -31.78880 -31.30292 -28.48532 -27.53889 -27.07198 -25.96207 -23.81170 -23.64216 -22.66708 -21.68271 -20.01534 -19.80197 -18.82825 -18.31908 -17.39606 -17.24825 -16.71266 -16.37176 -16.35075 -16.14752 -15.78005 -15.70825 -15.50947 -15.12553 -14.95156 -14.61424 -14.43873 -14.25516 -13.96093 -13.92976 -13.77627 -13.58892 -12.98953 -12.88102 -12.79894 -12.50137 -12.30407 -12.27359 -12.23873 -12.10829 -11.99524 -11.83969 -11.57462 -11.18265 -10.96229 -10.83120 -10.69219 -9.76852 -9.61612 -8.90384 -8.48169 -6.16295 0.61079 0.66231 1.33191 1.41884 1.52112 1.65969 1.93714 2.16860 2.76669 2.84270 3.14906 3.51795 3.63467 3.77881 3.85337 3.99304 4.04160 4.04653 4.09773 4.18206 4.20753 4.39222 4.43793 4.46317 4.52297 4.59055 4.65167 4.68755 4.72384 4.79165 4.79545 4.83606 4.94729 5.06073 5.10413 5.13921 5.16975 5.29945 5.33602 5.48797 5.57070 5.71207 5.77247 6.02440 6.13679 6.21421 6.41961 6.96532 7.22898 7.78021 8.75648 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.002483 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.155256 B =11274.761854 C =11910.775695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.078 3.922 4 H 0.056 0.944 5 C -0.113 4.113 6 C -0.128 4.128 7 C 0.094 3.906 8 N -0.610 5.610 9 C 0.510 3.490 10 O -0.583 6.583 11 C -0.074 4.074 12 C -0.146 4.146 13 C -0.058 4.058 14 C -0.206 4.206 15 C 0.112 3.888 16 O -0.234 6.234 17 C -0.413 4.413 18 H 0.100 0.900 19 C -0.025 4.025 20 N -0.922 5.922 21 Si 1.020 2.980 22 H -0.252 1.252 23 H -0.265 1.265 24 H -0.269 1.269 25 C -0.244 4.244 26 C -0.060 4.060 27 C 0.091 3.909 28 H 0.103 0.897 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.146 0.854 40 H 0.112 0.888 41 H 0.273 0.727 42 H 0.117 0.883 43 H 0.138 0.862 44 H 0.078 0.922 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.259 -19.928 19.152 30.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C 0.019 3.981 4 H 0.074 0.926 5 C -0.151 4.151 6 C -0.166 4.166 7 C -0.027 4.027 8 N -0.345 5.345 9 C 0.300 3.700 10 O -0.462 6.462 11 C -0.113 4.113 12 C -0.147 4.147 13 C -0.076 4.076 14 C -0.226 4.226 15 C 0.062 3.938 16 O -0.141 6.141 17 C -0.489 4.489 18 H 0.117 0.883 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.839 3.161 22 H -0.175 1.175 23 H -0.190 1.190 24 H -0.194 1.194 25 C -0.263 4.263 26 C -0.078 4.078 27 C -0.032 4.032 28 H 0.122 0.878 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.107 0.893 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.164 0.836 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.155 0.845 44 H 0.096 0.904 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.769 -19.976 18.448 30.040 hybrid contribution -1.443 0.745 -0.422 1.678 sum 11.326 -19.231 18.026 28.689 Atomic orbital electron populations 1.22956 0.80002 1.03944 1.00257 1.87871 1.20880 1.27695 1.94975 1.22517 0.96658 0.84332 0.94566 0.92575 1.21616 0.93757 0.98636 1.01075 1.21932 1.03185 0.95125 0.96322 1.22211 0.83851 1.04902 0.91704 1.48192 1.24781 1.09611 1.51898 1.21333 0.85021 0.86181 0.77490 1.90738 1.25906 1.84905 1.44684 1.20576 0.99318 0.88294 1.03148 1.19269 1.01146 1.00107 0.94167 1.20876 0.97907 0.95285 0.93485 1.20442 1.01139 1.00725 1.00252 1.19935 0.92682 0.89439 0.91751 1.83937 1.44132 1.46353 1.39641 1.21859 1.09109 1.22753 0.95221 0.88274 1.26620 1.00950 0.98037 0.96571 1.70200 1.40321 1.36384 1.09137 0.84514 0.75710 0.77562 0.78291 1.17527 1.18968 1.19447 1.21220 1.06145 1.05087 0.93839 1.20918 0.93810 0.93343 0.99709 1.21936 0.97930 0.85384 0.97982 0.87819 0.93158 0.94731 0.90314 0.90375 0.91515 0.86896 0.86799 0.89298 0.85164 0.84958 0.83602 0.87010 0.91830 0.86523 0.84456 0.90400 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.82 113.37 1.23 1.61 16 2 O -0.40 -7.39 10.35 -148.98 -1.54 -8.93 16 3 C 0.08 1.30 2.76 30.68 0.08 1.38 16 4 H 0.06 1.01 7.79 -2.39 -0.02 0.99 16 5 C -0.11 -1.18 5.54 30.62 0.17 -1.02 16 6 C -0.13 -0.84 6.08 30.67 0.19 -0.65 16 7 C 0.09 0.79 6.34 86.36 0.55 1.34 16 8 N -0.61 -11.10 2.97 -818.89 -2.43 -13.53 16 9 C 0.51 13.03 7.69 87.66 0.67 13.71 16 10 O -0.58 -22.04 15.45 -3.02 -0.05 -22.09 16 11 C -0.07 -1.49 4.18 29.11 0.12 -1.37 16 12 C -0.15 -4.69 4.38 -19.83 -0.09 -4.78 16 13 C -0.06 -2.06 9.69 22.25 0.22 -1.84 16 14 C -0.21 -9.41 9.99 22.39 0.22 -9.19 16 15 C 0.11 5.93 6.65 22.58 0.15 6.08 16 16 O -0.23 -14.76 9.76 -22.72 -0.22 -14.98 16 17 C -0.41 -25.11 9.49 67.92 0.64 -24.46 16 18 H 0.10 5.57 5.20 -2.91 -0.02 5.56 16 19 C -0.02 -1.45 5.49 84.83 0.47 -0.99 16 20 N -0.92 -58.33 13.67 21.61 0.30 -58.03 16 21 Si 1.02 44.33 29.55 68.60 2.03 46.35 16 22 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 23 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 C -0.24 -11.31 9.17 22.39 0.21 -11.11 16 26 C -0.06 -2.19 9.69 22.25 0.22 -1.97 16 27 C 0.09 1.85 6.05 86.36 0.52 2.37 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.05 0.68 8.09 -2.39 -0.02 0.67 16 30 H 0.03 0.60 8.03 -2.39 -0.02 0.58 16 31 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.11 0.49 5.93 -2.39 -0.01 0.48 16 36 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.13 1.74 7.63 -2.39 -0.02 1.72 16 38 H 0.13 1.74 7.88 -2.39 -0.02 1.72 16 39 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 40 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 41 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 42 H 0.12 5.50 5.64 -2.91 -0.02 5.48 16 43 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 1.63 6.89 -2.39 -0.02 1.61 16 Total: -1.00 -84.79 369.64 4.63 -80.16 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.99 Total: 21.94 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: 5.57 Total: -30.89 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -2.14 Total: -71.57 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -1.81 Total: -46.00 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -84.79 4.63 -80.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110700097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.478 kcal (2) G-P(sol) polarization free energy of solvation -84.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds