Wall clock time and date at job start Tue Mar 31 2020 12:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99665 * 2 1 4 4 C 1.53005 * 109.46916 * 184.93565 * 3 2 1 5 5 N 1.46495 * 109.47428 * 63.05474 * 4 3 2 6 6 C 1.46504 * 120.00363 * 91.92407 * 5 4 3 7 7 C 1.50702 * 109.47244 * 263.41967 * 6 5 4 8 8 H 1.08004 * 119.99833 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99869 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99979 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00013 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47399 * 179.97438 * 11 9 7 13 13 H 1.48498 * 109.47022 * 299.99875 * 11 9 7 14 14 H 1.48502 * 109.46939 * 59.99484 * 11 9 7 15 15 C 1.34778 * 119.99988 * 271.92994 * 5 4 3 16 16 O 1.21284 * 119.99981 * 5.39114 * 15 5 4 17 17 C 1.50702 * 120.00021 * 185.39404 * 15 5 4 18 18 H 1.08997 * 109.43320 * 326.32301 * 17 15 5 19 19 C 1.53076 * 109.43345 * 206.45352 * 17 15 5 20 20 C 1.53411 * 108.29960 * 191.74184 * 19 17 15 21 21 O 1.42829 * 108.37316 * 64.70778 * 20 19 17 22 22 C 1.35843 * 117.85966 * 310.79943 * 21 20 19 23 23 C 1.39149 * 118.49573 * 196.97426 * 22 21 20 24 24 C 1.37963 * 120.21788 * 180.39405 * 23 22 21 25 25 C 1.38299 * 119.95369 * 0.02562 * 24 23 22 26 26 C 1.38103 * 119.98562 * 359.93538 * 25 24 23 27 27 C 1.38366 * 121.80651 * 17.25717 * 22 21 20 28 28 H 1.08994 * 109.47941 * 304.95514 * 1 2 3 29 29 H 1.08996 * 109.47349 * 64.96053 * 1 2 3 30 30 H 1.09007 * 109.46973 * 184.95614 * 1 2 3 31 31 H 1.09001 * 109.47632 * 64.93434 * 3 2 1 32 32 H 1.08998 * 109.46739 * 304.93192 * 3 2 1 33 33 H 1.09000 * 109.47124 * 303.05168 * 4 3 2 34 34 H 1.09004 * 109.47127 * 183.05329 * 4 3 2 35 35 H 1.08993 * 109.46988 * 143.41237 * 6 5 4 36 36 H 1.09002 * 109.46647 * 23.41308 * 6 5 4 37 37 H 0.97005 * 119.99759 * 0.02562 * 10 9 7 38 38 H 1.09000 * 109.69640 * 311.44433 * 19 17 15 39 39 H 1.08995 * 109.69753 * 72.03782 * 19 17 15 40 40 H 1.09001 * 109.67961 * 304.99177 * 20 19 17 41 41 H 1.08997 * 109.71650 * 184.45147 * 20 19 17 42 42 H 1.08003 * 119.88919 * 0.39536 * 23 22 21 43 43 H 1.07992 * 120.02434 * 179.97438 * 24 23 22 44 44 H 1.07993 * 120.00418 * 179.90693 * 25 24 23 45 45 H 1.07995 * 119.84013 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5305 1.1869 -0.1241 5 7 3.8689 0.5686 -1.4083 6 6 4.1249 1.4085 -2.5810 7 6 2.8698 1.5116 -3.4088 8 1 1.9714 1.0019 -3.0932 9 6 2.8688 2.2556 -4.5696 10 7 3.9629 2.8757 -4.9542 11 14 1.3133 2.3827 -5.5961 12 1 1.5727 3.2342 -6.7847 13 1 0.9001 1.0268 -6.0387 14 1 0.2302 2.9886 -4.7805 15 6 3.9447 -0.7732 -1.5110 16 8 3.6380 -1.4718 -0.5683 17 6 4.4105 -1.4053 -2.7973 18 1 4.0816 -0.7974 -3.6401 19 6 3.8140 -2.8097 -2.9199 20 6 4.5254 -3.5367 -4.0683 21 8 5.8982 -3.7057 -3.7123 22 6 6.5735 -2.6198 -3.2539 23 6 7.9644 -2.6589 -3.2428 24 6 8.6857 -1.5789 -2.7771 25 6 8.0255 -0.4534 -2.3190 26 6 6.6451 -0.4107 -2.3293 27 6 5.9158 -1.4911 -2.7977 28 1 -0.3635 0.5887 0.8422 29 1 -0.3634 0.4349 -0.9310 30 1 -0.3633 -1.0239 0.0888 31 1 1.7602 1.8146 0.9309 32 1 1.6202 1.8767 -0.8425 33 1 3.9144 0.5702 0.6885 34 1 3.9780 2.1794 -0.0696 35 1 4.9197 0.9639 -3.1798 36 1 4.4283 2.4037 -2.2558 37 1 4.7708 2.8093 -4.4213 38 1 3.9661 -3.3560 -1.9890 39 1 2.7478 -2.7385 -3.1346 40 1 4.4528 -2.9429 -4.9795 41 1 4.0647 -4.5116 -4.2278 42 1 8.4809 -3.5375 -3.6000 43 1 9.7650 -1.6128 -2.7695 44 1 8.5892 0.3919 -1.9529 45 1 6.1320 0.4695 -1.9714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110909140.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:17 Heat of formation + Delta-G solvation = -92.181699 kcal Electronic energy + Delta-G solvation = -28691.518096 eV Core-core repulsion = 24867.456504 eV Total energy + Delta-G solvation = -3824.061592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.77775 -38.93979 -37.25685 -37.19388 -35.14137 -33.85291 -32.81737 -30.50181 -29.97003 -29.63622 -26.68141 -26.33396 -25.54422 -23.56227 -23.05000 -22.65846 -21.93747 -19.89060 -18.44637 -17.73432 -17.23239 -16.44104 -16.29692 -15.98790 -15.88960 -15.18443 -15.13498 -14.75082 -14.51910 -14.07510 -13.86408 -13.82276 -13.45406 -13.04527 -12.95218 -12.90276 -12.35964 -12.33818 -12.11161 -11.82921 -11.69861 -11.48468 -11.44461 -11.15759 -10.94070 -10.82395 -10.67414 -10.59360 -10.44716 -10.22810 -10.18090 -9.24057 -9.19903 -9.07390 -8.55974 -8.46635 -7.88120 -7.69414 -6.54851 -4.31413 1.55287 1.67674 3.31619 3.32004 3.39804 3.48690 3.51739 3.77704 4.07166 4.28713 4.37448 4.89388 4.97521 5.02109 5.12362 5.16961 5.28939 5.44375 5.46150 5.47816 5.57659 5.59129 5.62548 5.73198 5.74008 5.75718 5.80555 5.87596 5.91071 5.99694 6.07414 6.23032 6.24327 6.35250 6.48085 6.51677 6.54081 6.71309 6.75827 6.81167 7.01249 7.37002 7.65732 7.66940 7.82645 8.11992 8.38765 8.62005 9.01965 9.39588 10.80434 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.005899 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.506311 B = 4745.509635 C = 5646.112263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.365 6.365 3 C 0.045 3.955 4 C 0.126 3.874 5 N -0.594 5.594 6 C 0.219 3.781 7 C -0.615 4.615 8 H 0.056 0.944 9 C 0.025 3.975 10 N -0.902 5.902 11 Si 1.065 2.935 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.288 1.288 15 C 0.539 3.461 16 O -0.543 6.543 17 C -0.070 4.070 18 H 0.124 0.876 19 C -0.141 4.141 20 C 0.063 3.937 21 O -0.319 6.319 22 C 0.136 3.864 23 C -0.155 4.155 24 C -0.092 4.092 25 C -0.153 4.153 26 C -0.085 4.085 27 C -0.134 4.134 28 H 0.031 0.969 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.036 0.964 36 H 0.025 0.975 37 H 0.269 0.731 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.371 -6.279 4.481 8.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.283 6.283 3 C -0.033 4.033 4 C 0.002 3.998 5 N -0.325 5.325 6 C 0.098 3.902 7 C -0.654 4.654 8 H 0.074 0.926 9 C -0.181 4.181 10 N -0.537 5.537 11 Si 0.893 3.107 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.214 1.214 15 C 0.326 3.674 16 O -0.421 6.421 17 C -0.091 4.091 18 H 0.141 0.859 19 C -0.178 4.178 20 C -0.012 4.012 21 O -0.233 6.233 22 C 0.091 3.909 23 C -0.173 4.173 24 C -0.110 4.110 25 C -0.171 4.171 26 C -0.103 4.103 27 C -0.136 4.136 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.125 0.875 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.762 -6.311 3.567 7.460 hybrid contribution 0.020 0.063 1.283 1.284 sum 1.782 -6.248 4.849 8.107 Atomic orbital electron populations 1.22638 0.82686 1.01750 0.99303 1.88108 1.18060 1.26959 1.95161 1.22988 0.95103 0.85483 0.99715 1.21308 0.93175 0.98273 0.87019 1.47920 1.68079 1.05784 1.10744 1.19683 0.97724 0.89772 0.82987 1.22321 0.97632 1.35473 1.09931 0.92559 1.25766 1.03121 0.92915 0.96288 1.70833 1.01706 1.40666 1.40542 0.83581 0.74263 0.76604 0.76273 1.20604 1.21292 1.21449 1.19836 0.77011 0.82159 0.88415 1.90613 1.49548 1.61861 1.40059 1.20247 0.91326 0.97920 0.99609 0.85850 1.22072 1.00833 0.94966 0.99974 1.23011 0.79022 1.02027 0.97173 1.85924 1.25245 1.32563 1.79584 1.18634 0.91198 0.86144 0.94969 1.20488 0.90695 1.00291 1.05854 1.20856 0.99411 0.92882 0.97874 1.20988 0.94224 0.98707 1.03206 1.21367 0.94208 0.97759 0.96955 1.19502 0.94570 0.95126 1.04353 0.95028 0.94436 0.90435 0.94017 0.91893 0.90564 0.89773 0.94662 0.95707 0.92086 0.89404 0.89613 0.91519 0.87454 0.85527 0.85744 0.86064 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.16 8.98 -51.67 -0.46 -7.62 16 3 C 0.05 0.80 6.29 37.16 0.23 1.04 16 4 C 0.13 2.29 5.91 -4.04 -0.02 2.27 16 5 N -0.59 -12.27 1.85 -175.05 -0.32 -12.59 16 6 C 0.22 4.91 3.05 -5.19 -0.02 4.89 16 7 C -0.62 -15.47 8.49 -34.44 -0.29 -15.76 16 8 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 9 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 10 N -0.90 -24.85 13.65 55.43 0.76 -24.09 16 11 Si 1.06 23.54 29.90 -169.99 -5.08 18.45 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 15 C 0.54 11.51 5.59 -10.98 -0.06 11.45 16 16 O -0.54 -12.68 14.28 -10.89 -0.16 -12.84 16 17 C -0.07 -1.38 2.01 -92.85 -0.19 -1.57 16 18 H 0.12 2.67 6.12 -51.93 -0.32 2.35 16 19 C -0.14 -2.40 5.26 -26.48 -0.14 -2.54 16 20 C 0.06 0.91 7.03 37.37 0.26 1.17 16 21 O -0.32 -5.26 10.27 -19.25 -0.20 -5.46 16 22 C 0.14 2.36 6.47 -39.20 -0.25 2.11 16 23 C -0.15 -2.34 9.94 -39.34 -0.39 -2.73 16 24 C -0.09 -1.28 10.04 -39.66 -0.40 -1.68 16 25 C -0.15 -2.34 10.04 -39.61 -0.40 -2.74 16 26 C -0.08 -1.53 8.10 -39.53 -0.32 -1.85 16 27 C -0.13 -2.52 5.37 -104.44 -0.56 -3.08 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.22 8.04 -51.93 -0.42 0.81 16 33 H 0.08 1.39 7.56 -51.93 -0.39 1.00 16 34 H 0.08 1.33 7.82 -51.93 -0.41 0.93 16 35 H 0.04 0.82 4.59 -51.93 -0.24 0.58 16 36 H 0.02 0.57 7.67 -51.93 -0.40 0.17 16 37 H 0.27 7.29 7.22 -40.82 -0.29 7.00 16 38 H 0.09 1.61 7.44 -51.93 -0.39 1.22 16 39 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 43 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.14 2.53 4.65 -52.49 -0.24 2.29 16 LS Contribution 360.41 15.07 5.43 5.43 Total: -1.00 -30.83 360.41 -8.10 -38.92 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.53 Total: 6.64 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -1.53 Total: -6.84 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.43 Total: -36.68 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.82 Total: -25.92 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.08 Total: 18.45 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.83 -8.10 -38.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110909140.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.257 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds