Wall clock time and date at job start Tue Mar 31 2020 12:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99665 * 2 1 4 4 C 1.53005 * 109.46916 * 184.93565 * 3 2 1 5 5 N 1.46495 * 109.47428 * 63.05474 * 4 3 2 6 6 C 1.46504 * 120.00363 * 91.92407 * 5 4 3 7 7 C 1.50702 * 109.47244 * 263.41967 * 6 5 4 8 8 H 1.08004 * 119.99833 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99869 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99979 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00013 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47399 * 179.97438 * 11 9 7 13 13 H 1.48498 * 109.47022 * 299.99875 * 11 9 7 14 14 H 1.48502 * 109.46939 * 59.99484 * 11 9 7 15 15 C 1.34778 * 119.99988 * 271.92994 * 5 4 3 16 16 O 1.21284 * 119.99981 * 5.39114 * 15 5 4 17 17 C 1.50702 * 120.00021 * 185.39404 * 15 5 4 18 18 H 1.08997 * 109.43320 * 326.32301 * 17 15 5 19 19 C 1.53076 * 109.43345 * 206.45352 * 17 15 5 20 20 C 1.53411 * 108.29960 * 191.74184 * 19 17 15 21 21 O 1.42829 * 108.37316 * 64.70778 * 20 19 17 22 22 C 1.35843 * 117.85966 * 310.79943 * 21 20 19 23 23 C 1.39149 * 118.49573 * 196.97426 * 22 21 20 24 24 C 1.37963 * 120.21788 * 180.39405 * 23 22 21 25 25 C 1.38299 * 119.95369 * 0.02562 * 24 23 22 26 26 C 1.38103 * 119.98562 * 359.93538 * 25 24 23 27 27 C 1.38366 * 121.80651 * 17.25717 * 22 21 20 28 28 H 1.08994 * 109.47941 * 304.95514 * 1 2 3 29 29 H 1.08996 * 109.47349 * 64.96053 * 1 2 3 30 30 H 1.09007 * 109.46973 * 184.95614 * 1 2 3 31 31 H 1.09001 * 109.47632 * 64.93434 * 3 2 1 32 32 H 1.08998 * 109.46739 * 304.93192 * 3 2 1 33 33 H 1.09000 * 109.47124 * 303.05168 * 4 3 2 34 34 H 1.09004 * 109.47127 * 183.05329 * 4 3 2 35 35 H 1.08993 * 109.46988 * 143.41237 * 6 5 4 36 36 H 1.09002 * 109.46647 * 23.41308 * 6 5 4 37 37 H 0.97005 * 119.99759 * 0.02562 * 10 9 7 38 38 H 1.09000 * 109.69640 * 311.44433 * 19 17 15 39 39 H 1.08995 * 109.69753 * 72.03782 * 19 17 15 40 40 H 1.09001 * 109.67961 * 304.99177 * 20 19 17 41 41 H 1.08997 * 109.71650 * 184.45147 * 20 19 17 42 42 H 1.08003 * 119.88919 * 0.39536 * 23 22 21 43 43 H 1.07992 * 120.02434 * 179.97438 * 24 23 22 44 44 H 1.07993 * 120.00418 * 179.90693 * 25 24 23 45 45 H 1.07995 * 119.84013 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5305 1.1869 -0.1241 5 7 3.8689 0.5686 -1.4083 6 6 4.1249 1.4085 -2.5810 7 6 2.8698 1.5116 -3.4088 8 1 1.9714 1.0019 -3.0932 9 6 2.8688 2.2556 -4.5696 10 7 3.9629 2.8757 -4.9542 11 14 1.3133 2.3827 -5.5961 12 1 1.5727 3.2342 -6.7847 13 1 0.9001 1.0268 -6.0387 14 1 0.2302 2.9886 -4.7805 15 6 3.9447 -0.7732 -1.5110 16 8 3.6380 -1.4718 -0.5683 17 6 4.4105 -1.4053 -2.7973 18 1 4.0816 -0.7974 -3.6401 19 6 3.8140 -2.8097 -2.9199 20 6 4.5254 -3.5367 -4.0683 21 8 5.8982 -3.7057 -3.7123 22 6 6.5735 -2.6198 -3.2539 23 6 7.9644 -2.6589 -3.2428 24 6 8.6857 -1.5789 -2.7771 25 6 8.0255 -0.4534 -2.3190 26 6 6.6451 -0.4107 -2.3293 27 6 5.9158 -1.4911 -2.7977 28 1 -0.3635 0.5887 0.8422 29 1 -0.3634 0.4349 -0.9310 30 1 -0.3633 -1.0239 0.0888 31 1 1.7602 1.8146 0.9309 32 1 1.6202 1.8767 -0.8425 33 1 3.9144 0.5702 0.6885 34 1 3.9780 2.1794 -0.0696 35 1 4.9197 0.9639 -3.1798 36 1 4.4283 2.4037 -2.2558 37 1 4.7708 2.8093 -4.4213 38 1 3.9661 -3.3560 -1.9890 39 1 2.7478 -2.7385 -3.1346 40 1 4.4528 -2.9429 -4.9795 41 1 4.0647 -4.5116 -4.2278 42 1 8.4809 -3.5375 -3.6000 43 1 9.7650 -1.6128 -2.7695 44 1 8.5892 0.3919 -1.9529 45 1 6.1320 0.4695 -1.9714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110909140.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:17 Heat of formation + Delta-G solvation = -109.141517 kcal Electronic energy + Delta-G solvation = -28692.253529 eV Core-core repulsion = 24867.456504 eV Total energy + Delta-G solvation = -3824.797024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.15949 -40.46926 -38.64734 -38.48418 -36.89492 -35.27394 -34.72986 -31.78789 -31.24680 -31.08597 -28.53794 -27.67439 -26.90451 -25.00960 -24.83205 -24.01772 -23.29973 -21.24090 -20.08182 -19.08611 -19.07513 -17.84931 -17.77189 -17.43462 -17.21198 -16.73165 -16.56645 -16.08366 -15.90867 -15.66719 -15.41022 -15.26619 -14.77772 -14.69198 -14.47535 -14.25443 -13.96218 -13.65797 -13.58907 -13.32635 -13.25372 -13.05264 -12.82449 -12.61052 -12.45881 -12.43200 -12.06628 -11.98169 -11.97224 -11.77287 -11.58639 -11.11080 -10.77386 -10.60541 -10.49600 -9.78585 -9.45873 -9.15444 -8.61679 -6.39782 0.29468 0.42173 1.51723 1.56178 1.73112 1.76857 2.17180 2.34126 2.53003 2.78249 2.94638 3.13483 3.49427 3.64097 3.67558 3.78374 4.08487 4.13392 4.16197 4.18180 4.23256 4.31751 4.37860 4.44982 4.48210 4.49067 4.52231 4.53987 4.59067 4.66719 4.67938 4.75408 4.88201 4.88989 4.92700 4.99853 5.06904 5.29862 5.45932 5.55088 5.67797 5.82399 5.85697 6.13065 6.31180 6.39992 6.50452 6.62913 7.29586 7.40912 8.72597 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.005899 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.506311 B = 4745.509635 C = 5646.112263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.398 6.398 3 C 0.049 3.951 4 C 0.117 3.883 5 N -0.593 5.593 6 C 0.235 3.765 7 C -0.612 4.612 8 H 0.041 0.959 9 C -0.016 4.016 10 N -0.926 5.926 11 Si 1.103 2.897 12 H -0.283 1.283 13 H -0.275 1.275 14 H -0.275 1.275 15 C 0.536 3.464 16 O -0.567 6.567 17 C -0.067 4.067 18 H 0.095 0.905 19 C -0.136 4.136 20 C 0.066 3.934 21 O -0.322 6.322 22 C 0.119 3.881 23 C -0.155 4.155 24 C -0.080 4.080 25 C -0.155 4.155 26 C -0.109 4.109 27 C -0.162 4.162 28 H 0.057 0.943 29 H 0.030 0.970 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.030 0.970 36 H 0.020 0.980 37 H 0.261 0.739 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.145 0.855 42 H 0.154 0.846 43 H 0.167 0.833 44 H 0.145 0.855 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.058 -7.051 4.474 8.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.028 4.028 4 C -0.006 4.006 5 N -0.324 5.324 6 C 0.113 3.887 7 C -0.650 4.650 8 H 0.059 0.941 9 C -0.216 4.216 10 N -0.562 5.562 11 Si 0.926 3.074 12 H -0.208 1.208 13 H -0.200 1.200 14 H -0.200 1.200 15 C 0.324 3.676 16 O -0.447 6.447 17 C -0.088 4.088 18 H 0.113 0.887 19 C -0.174 4.174 20 C -0.009 4.009 21 O -0.236 6.236 22 C 0.073 3.927 23 C -0.173 4.173 24 C -0.097 4.097 25 C -0.173 4.173 26 C -0.128 4.128 27 C -0.163 4.163 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.048 0.952 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.163 0.837 42 H 0.172 0.828 43 H 0.185 0.815 44 H 0.163 0.837 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.444 -7.078 3.581 8.300 hybrid contribution -0.147 0.298 1.357 1.397 sum 2.297 -6.780 4.937 8.696 Atomic orbital electron populations 1.22802 0.80795 1.03024 1.00064 1.88064 1.20310 1.27922 1.95375 1.22962 0.94354 0.85032 1.00488 1.21570 0.94054 0.99186 0.85757 1.47909 1.67772 1.05632 1.11047 1.19368 0.96467 0.89528 0.83292 1.22444 0.97849 1.34598 1.10133 0.94059 1.26894 1.04779 0.92513 0.97459 1.70930 1.02063 1.42247 1.41008 0.83083 0.71933 0.77187 0.75203 1.20809 1.20034 1.20012 1.20173 0.76403 0.82206 0.88808 1.90581 1.50806 1.62257 1.41066 1.20151 0.92745 0.98597 0.97321 0.88710 1.22045 1.01151 0.93716 1.00531 1.23176 0.78223 1.03707 0.95749 1.85915 1.25842 1.32305 1.79552 1.18937 0.92373 0.85911 0.95434 1.20926 0.89794 1.01600 1.04990 1.21340 1.01439 0.91447 0.95501 1.21326 0.93176 1.00194 1.02637 1.21398 0.95722 0.97278 0.98354 1.19543 0.93874 0.96440 1.06433 0.92402 0.95104 0.89334 0.90592 0.94005 0.90673 0.87649 0.95243 0.96253 0.92971 0.90766 0.89480 0.91446 0.83701 0.82843 0.81517 0.83736 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 11.01 113.37 1.25 2.14 16 2 O -0.40 -15.63 8.98 -133.26 -1.20 -16.83 16 3 C 0.05 1.74 6.29 71.98 0.45 2.20 16 4 C 0.12 4.30 5.91 86.38 0.51 4.81 16 5 N -0.59 -25.29 1.85 -826.14 -1.53 -26.82 16 6 C 0.23 10.92 3.05 85.63 0.26 11.18 16 7 C -0.61 -31.55 8.49 25.60 0.22 -31.34 16 8 H 0.04 2.23 7.81 -2.91 -0.02 2.20 16 9 C -0.02 -0.84 5.46 84.65 0.46 -0.38 16 10 N -0.93 -51.86 13.65 21.45 0.29 -51.57 16 11 Si 1.10 47.46 29.90 68.60 2.05 49.51 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 14 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 15 C 0.54 23.73 5.59 87.66 0.49 24.22 16 16 O -0.57 -27.29 14.28 12.68 0.18 -27.11 16 17 C -0.07 -2.74 2.01 -12.24 -0.02 -2.76 16 18 H 0.09 4.33 6.12 -2.39 -0.01 4.32 16 19 C -0.14 -4.76 5.26 30.76 0.16 -4.60 16 20 C 0.07 1.86 7.03 72.12 0.51 2.37 16 21 O -0.32 -10.26 10.27 -91.78 -0.94 -11.20 16 22 C 0.12 4.04 6.47 22.52 0.15 4.19 16 23 C -0.15 -4.29 9.94 22.42 0.22 -4.07 16 24 C -0.08 -1.97 10.04 22.22 0.22 -1.75 16 25 C -0.16 -4.53 10.04 22.25 0.22 -4.30 16 26 C -0.11 -4.01 8.10 22.30 0.18 -3.83 16 27 C -0.16 -6.18 5.37 -19.75 -0.11 -6.28 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 33 H 0.07 2.78 7.56 -2.39 -0.02 2.76 16 34 H 0.11 3.33 7.82 -2.38 -0.02 3.31 16 35 H 0.03 1.44 4.59 -2.39 -0.01 1.43 16 36 H 0.02 0.92 7.67 -2.39 -0.02 0.91 16 37 H 0.26 14.55 7.22 -92.70 -0.67 13.88 16 38 H 0.07 2.78 7.44 -2.39 -0.02 2.76 16 39 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.15 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 43 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 44 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 45 H 0.12 4.60 4.65 -2.91 -0.01 4.59 16 Total: -1.00 -68.00 360.41 5.12 -62.88 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 1.09 Total: 29.33 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 5.18 Total: -8.20 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -1.24 Total: -78.39 kcal Atomic # 8 Polarization: -53.18 SS G_CDS: -1.96 Total: -55.14 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.05 Total: 49.51 kcal Total: -68.00 5.12 -62.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110909140.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.264 kcal (2) G-P(sol) polarization free energy of solvation -67.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds