Wall clock time and date at job start Tue Mar 31 2020 12:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 113.99804 * 2 1 4 4 C 1.53001 * 109.47039 * 179.97438 * 3 2 1 5 5 N 1.46509 * 109.47343 * 65.21909 * 4 3 2 6 6 C 1.46491 * 119.99753 * 264.57587 * 5 4 3 7 7 C 1.50698 * 109.47269 * 269.99478 * 6 5 4 8 8 H 1.08006 * 119.99877 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00709 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99623 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00546 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46971 * 59.99904 * 11 9 7 13 13 H 1.48493 * 109.46990 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46727 * 299.99913 * 11 9 7 15 15 C 1.34773 * 119.99779 * 84.57362 * 5 4 3 16 16 O 1.21284 * 119.99788 * 184.70341 * 15 5 4 17 17 C 1.50699 * 119.99999 * 4.69795 * 15 5 4 18 18 H 1.08996 * 109.43696 * 335.74891 * 17 15 5 19 19 C 1.53073 * 109.43444 * 95.66864 * 17 15 5 20 20 C 1.53400 * 108.33838 * 168.19647 * 19 17 15 21 21 O 1.42819 * 108.37637 * 295.34941 * 20 19 17 22 22 C 1.35838 * 117.88973 * 49.13324 * 21 20 19 23 23 C 1.39147 * 118.49707 * 163.05830 * 22 21 20 24 24 C 1.37973 * 120.21801 * 179.55638 * 23 22 21 25 25 C 1.38287 * 119.95234 * 0.03808 * 24 23 22 26 26 C 1.38107 * 119.99082 * 0.06715 * 25 24 23 27 27 C 1.38372 * 121.80533 * 342.76944 * 22 21 20 28 28 H 1.09002 * 109.46835 * 60.00257 * 1 2 3 29 29 H 1.09006 * 109.46688 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47175 * 300.00234 * 1 2 3 31 31 H 1.08998 * 109.47168 * 59.99932 * 3 2 1 32 32 H 1.09003 * 109.46674 * 299.99430 * 3 2 1 33 33 H 1.08998 * 109.47070 * 305.21862 * 4 3 2 34 34 H 1.08993 * 109.47312 * 185.21826 * 4 3 2 35 35 H 1.09007 * 109.47769 * 29.99772 * 6 5 4 36 36 H 1.09003 * 109.47356 * 149.99788 * 6 5 4 37 37 H 0.97000 * 119.99842 * 180.02562 * 10 9 7 38 38 H 1.09005 * 109.69520 * 287.91390 * 19 17 15 39 39 H 1.08999 * 109.70187 * 48.46315 * 19 17 15 40 40 H 1.08995 * 109.68528 * 55.02875 * 20 19 17 41 41 H 1.09002 * 109.68580 * 175.58958 * 20 19 17 42 42 H 1.08005 * 119.89437 * 359.55659 * 23 22 21 43 43 H 1.07995 * 120.02323 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.00923 * 180.02562 * 25 24 23 45 45 H 1.07992 * 119.85056 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9771 0.5688 -1.2531 6 6 4.2212 -0.8743 -1.3140 7 6 5.6594 -1.1558 -0.9627 8 1 6.3249 -0.3412 -0.7181 9 6 6.1257 -2.4533 -0.9535 10 7 5.3151 -3.4455 -1.2509 11 14 7.9082 -2.8023 -0.5173 12 1 8.1869 -2.3112 0.8561 13 1 8.1559 -4.2651 -0.5803 14 1 8.7987 -2.1079 -1.4816 15 6 4.1588 1.3300 -2.3504 16 8 4.4414 0.8100 -3.4091 17 6 4.0107 2.8270 -2.2620 18 1 3.3655 3.0786 -1.4202 19 6 5.3875 3.4638 -2.0568 20 6 5.2551 4.9777 -2.2659 21 8 4.8937 5.2143 -3.6272 22 6 3.8599 4.5001 -4.1435 23 6 3.2635 4.9495 -5.3176 24 6 2.2169 4.2465 -5.8779 25 6 1.7575 3.0918 -5.2713 26 6 2.3456 2.6439 -4.1048 27 6 3.3964 3.3457 -3.5374 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8463 -0.8901 33 1 3.8505 0.5654 0.8404 34 1 3.9784 2.1762 0.0941 35 1 3.5677 -1.3837 -0.6057 36 1 4.0161 -1.2354 -2.3219 37 1 5.6430 -4.3583 -1.2441 38 1 5.7384 3.2621 -1.0446 39 1 6.0934 3.0534 -2.7788 40 1 4.4818 5.3730 -1.6074 41 1 6.2066 5.4630 -2.0484 42 1 3.6210 5.8516 -5.7919 43 1 1.7565 4.5979 -6.7895 44 1 0.9386 2.5406 -5.7094 45 1 1.9848 1.7421 -3.6327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110909144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:21 Heat of formation + Delta-G solvation = -88.950425 kcal Electronic energy + Delta-G solvation = -28072.238036 eV Core-core repulsion = 24248.316563 eV Total energy + Delta-G solvation = -3823.921473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.93281 -38.96256 -37.54837 -37.38631 -34.87999 -34.09521 -32.57158 -30.59500 -30.13095 -29.64468 -27.58839 -26.11935 -25.74892 -23.77000 -22.96280 -22.73987 -22.12243 -20.07182 -18.53571 -17.66431 -17.05546 -16.62116 -16.40905 -16.10034 -15.88043 -15.53551 -15.11613 -14.90682 -14.67462 -14.34306 -14.02903 -13.85489 -13.67623 -13.28156 -13.11114 -12.91463 -12.58290 -12.36337 -12.03736 -11.85985 -11.71897 -11.64870 -11.40960 -11.24286 -11.02541 -10.93222 -10.87763 -10.78785 -10.53483 -10.38729 -10.12914 -9.60640 -9.49128 -8.92588 -8.62952 -8.37278 -8.06831 -7.64101 -5.98653 -4.03492 1.40885 1.54531 3.27282 3.31622 3.33697 3.38436 3.41480 3.72692 3.94785 4.02705 4.47561 4.57893 4.70848 4.78137 4.88000 5.08241 5.14399 5.18819 5.21624 5.30979 5.34411 5.36834 5.43305 5.45675 5.50534 5.53682 5.55218 5.56452 5.61154 5.64450 5.80664 5.91477 6.06991 6.11063 6.19613 6.36111 6.56236 6.66009 6.85237 7.21005 7.34860 7.48269 7.55277 7.60176 7.98480 8.29867 8.44075 8.93208 9.09727 9.60711 11.09270 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011604 B = 0.004670 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.415207 B = 5993.929205 C = 7031.310326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.042 3.958 4 C 0.110 3.890 5 N -0.587 5.587 6 C 0.250 3.750 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.514 3.486 16 O -0.528 6.528 17 C -0.072 4.072 18 H 0.096 0.904 19 C -0.149 4.149 20 C 0.066 3.934 21 O -0.318 6.318 22 C 0.135 3.865 23 C -0.155 4.155 24 C -0.089 4.089 25 C -0.154 4.154 26 C -0.060 4.060 27 C -0.134 4.134 28 H 0.036 0.964 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.726 17.685 0.823 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.036 4.036 4 C -0.015 4.015 5 N -0.318 5.318 6 C 0.132 3.868 7 C -0.567 4.567 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.300 3.700 16 O -0.404 6.404 17 C -0.093 4.093 18 H 0.113 0.887 19 C -0.187 4.187 20 C -0.009 4.009 21 O -0.232 6.232 22 C 0.090 3.910 23 C -0.174 4.174 24 C -0.107 4.107 25 C -0.172 4.172 26 C -0.079 4.079 27 C -0.135 4.135 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.128 0.872 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.345 17.124 0.162 19.050 hybrid contribution 0.714 -0.295 0.562 0.955 sum -7.631 16.829 0.723 18.492 Atomic orbital electron populations 1.22711 0.81940 1.02650 0.99196 1.88093 1.18797 1.26842 1.95147 1.23165 0.95342 0.85534 0.99600 1.21540 0.91109 0.99094 0.89774 1.48170 1.64505 1.11033 1.08132 1.19296 0.95971 0.72576 0.98989 1.21418 0.95813 0.92396 1.47096 0.92729 1.24913 0.97688 0.96065 0.95305 1.69937 1.35224 0.99411 1.48546 0.86605 0.85148 0.77123 0.78790 1.20294 1.21197 1.20292 1.19897 0.78333 0.87281 0.84516 1.90696 1.47466 1.73941 1.28337 1.20340 0.97640 0.94966 0.96379 0.88662 1.22164 0.96533 0.95342 1.04638 1.22961 1.01421 0.95722 0.80796 1.85953 1.47577 1.61210 1.28437 1.18620 0.88013 0.90460 0.93875 1.20491 0.98403 1.02131 0.96363 1.20869 0.95810 0.94899 0.99132 1.20979 1.01881 0.97650 0.96667 1.20913 0.93986 0.97766 0.95191 1.19356 0.99526 0.95812 0.98817 0.94555 0.89713 0.94606 0.92959 0.93734 0.88609 0.90286 0.93939 0.94142 0.92747 0.89098 0.89336 0.91769 0.87211 0.85478 0.85659 0.86011 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.18 10.17 -35.23 -0.36 -6.54 16 3 C 0.04 0.57 5.97 37.16 0.22 0.80 16 4 C 0.11 1.73 5.40 -4.04 -0.02 1.70 16 5 N -0.59 -12.31 2.42 -175.06 -0.42 -12.73 16 6 C 0.25 6.64 5.11 -5.20 -0.03 6.62 16 7 C -0.53 -15.02 9.39 -34.44 -0.32 -15.34 16 8 H 0.05 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 11 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 15 C 0.51 10.67 5.57 -10.99 -0.06 10.61 16 16 O -0.53 -13.53 15.41 5.55 0.09 -13.44 16 17 C -0.07 -1.12 1.97 -92.85 -0.18 -1.30 16 18 H 0.10 1.22 5.32 -51.93 -0.28 0.95 16 19 C -0.15 -2.03 5.48 -26.49 -0.15 -2.18 16 20 C 0.07 0.72 7.03 37.36 0.26 0.98 16 21 O -0.32 -4.43 10.27 -19.23 -0.20 -4.63 16 22 C 0.14 2.03 6.47 -39.19 -0.25 1.78 16 23 C -0.16 -2.05 9.94 -39.34 -0.39 -2.45 16 24 C -0.09 -1.09 10.04 -39.66 -0.40 -1.49 16 25 C -0.15 -2.09 10.04 -39.61 -0.40 -2.49 16 26 C -0.06 -0.97 8.58 -39.53 -0.34 -1.30 16 27 C -0.13 -2.14 5.12 -104.44 -0.53 -2.68 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.59 7.46 -51.93 -0.39 0.21 16 33 H 0.10 1.60 8.03 -51.93 -0.42 1.19 16 34 H 0.08 0.97 6.37 -51.93 -0.33 0.64 16 35 H 0.04 1.18 7.64 -51.93 -0.40 0.78 16 36 H 0.04 1.23 7.36 -51.93 -0.38 0.85 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.09 1.07 7.99 -51.93 -0.42 0.66 16 39 H 0.09 1.45 8.10 -51.93 -0.42 1.03 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 43 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 44 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.12 2.05 7.34 -52.49 -0.39 1.67 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -35.52 369.74 -7.94 -43.46 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.76 Total: 1.05 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.58 Total: -3.53 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.31 Total: -38.92 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.47 Total: -24.62 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.52 -7.94 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110909144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.487 kcal (2) G-P(sol) polarization free energy of solvation -35.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds