Wall clock time and date at job start Tue Mar 31 2020 12:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 113.99804 * 2 1 4 4 C 1.53001 * 109.47039 * 179.97438 * 3 2 1 5 5 N 1.46509 * 109.47343 * 65.21909 * 4 3 2 6 6 C 1.46491 * 119.99753 * 264.57587 * 5 4 3 7 7 C 1.50698 * 109.47269 * 269.99478 * 6 5 4 8 8 H 1.08006 * 119.99877 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00709 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99623 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00546 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46971 * 59.99904 * 11 9 7 13 13 H 1.48493 * 109.46990 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46727 * 299.99913 * 11 9 7 15 15 C 1.34773 * 119.99779 * 84.57362 * 5 4 3 16 16 O 1.21284 * 119.99788 * 184.70341 * 15 5 4 17 17 C 1.50699 * 119.99999 * 4.69795 * 15 5 4 18 18 H 1.08996 * 109.43696 * 335.74891 * 17 15 5 19 19 C 1.53073 * 109.43444 * 95.66864 * 17 15 5 20 20 C 1.53400 * 108.33838 * 168.19647 * 19 17 15 21 21 O 1.42819 * 108.37637 * 295.34941 * 20 19 17 22 22 C 1.35838 * 117.88973 * 49.13324 * 21 20 19 23 23 C 1.39147 * 118.49707 * 163.05830 * 22 21 20 24 24 C 1.37973 * 120.21801 * 179.55638 * 23 22 21 25 25 C 1.38287 * 119.95234 * 0.03808 * 24 23 22 26 26 C 1.38107 * 119.99082 * 0.06715 * 25 24 23 27 27 C 1.38372 * 121.80533 * 342.76944 * 22 21 20 28 28 H 1.09002 * 109.46835 * 60.00257 * 1 2 3 29 29 H 1.09006 * 109.46688 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47175 * 300.00234 * 1 2 3 31 31 H 1.08998 * 109.47168 * 59.99932 * 3 2 1 32 32 H 1.09003 * 109.46674 * 299.99430 * 3 2 1 33 33 H 1.08998 * 109.47070 * 305.21862 * 4 3 2 34 34 H 1.08993 * 109.47312 * 185.21826 * 4 3 2 35 35 H 1.09007 * 109.47769 * 29.99772 * 6 5 4 36 36 H 1.09003 * 109.47356 * 149.99788 * 6 5 4 37 37 H 0.97000 * 119.99842 * 180.02562 * 10 9 7 38 38 H 1.09005 * 109.69520 * 287.91390 * 19 17 15 39 39 H 1.08999 * 109.70187 * 48.46315 * 19 17 15 40 40 H 1.08995 * 109.68528 * 55.02875 * 20 19 17 41 41 H 1.09002 * 109.68580 * 175.58958 * 20 19 17 42 42 H 1.08005 * 119.89437 * 359.55659 * 23 22 21 43 43 H 1.07995 * 120.02323 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.00923 * 180.02562 * 25 24 23 45 45 H 1.07992 * 119.85056 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9771 0.5688 -1.2531 6 6 4.2212 -0.8743 -1.3140 7 6 5.6594 -1.1558 -0.9627 8 1 6.3249 -0.3412 -0.7181 9 6 6.1257 -2.4533 -0.9535 10 7 5.3151 -3.4455 -1.2509 11 14 7.9082 -2.8023 -0.5173 12 1 8.1869 -2.3112 0.8561 13 1 8.1559 -4.2651 -0.5803 14 1 8.7987 -2.1079 -1.4816 15 6 4.1588 1.3300 -2.3504 16 8 4.4414 0.8100 -3.4091 17 6 4.0107 2.8270 -2.2620 18 1 3.3655 3.0786 -1.4202 19 6 5.3875 3.4638 -2.0568 20 6 5.2551 4.9777 -2.2659 21 8 4.8937 5.2143 -3.6272 22 6 3.8599 4.5001 -4.1435 23 6 3.2635 4.9495 -5.3176 24 6 2.2169 4.2465 -5.8779 25 6 1.7575 3.0918 -5.2713 26 6 2.3456 2.6439 -4.1048 27 6 3.3964 3.3457 -3.5374 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8463 -0.8901 33 1 3.8505 0.5654 0.8404 34 1 3.9784 2.1762 0.0941 35 1 3.5677 -1.3837 -0.6057 36 1 4.0161 -1.2354 -2.3219 37 1 5.6430 -4.3583 -1.2441 38 1 5.7384 3.2621 -1.0446 39 1 6.0934 3.0534 -2.7788 40 1 4.4818 5.3730 -1.6074 41 1 6.2066 5.4630 -2.0484 42 1 3.6210 5.8516 -5.7919 43 1 1.7565 4.5979 -6.7895 44 1 0.9386 2.5406 -5.7094 45 1 1.9848 1.7421 -3.6327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110909144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:21 Heat of formation + Delta-G solvation = -112.922375 kcal Electronic energy + Delta-G solvation = -28073.277537 eV Core-core repulsion = 24248.316563 eV Total energy + Delta-G solvation = -3824.960975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.11470 -40.41149 -38.78036 -38.41708 -36.57831 -35.43417 -34.59777 -31.61405 -31.24380 -31.11541 -29.29238 -27.30981 -27.11526 -24.91305 -24.65913 -24.02486 -23.38193 -21.21721 -20.00473 -18.77349 -18.64241 -18.35274 -17.76379 -17.27611 -17.11036 -16.80659 -16.62615 -16.17777 -15.93948 -15.84514 -15.37880 -15.09822 -14.85843 -14.57561 -14.33573 -14.26326 -14.09186 -13.68675 -13.53468 -13.22572 -13.05392 -12.94235 -12.85908 -12.69912 -12.57345 -12.48152 -12.20205 -12.11117 -11.97826 -11.76759 -11.71658 -11.57868 -10.64669 -10.60777 -10.52647 -9.76459 -9.44940 -9.12375 -8.20339 -6.35854 0.32895 0.46339 1.35368 1.40379 1.47355 1.73006 2.21243 2.36748 2.43640 2.80019 2.92656 3.09046 3.38780 3.60261 3.68594 3.76974 4.02191 4.09069 4.13675 4.19621 4.25137 4.36295 4.38325 4.46087 4.48955 4.50784 4.51905 4.55747 4.57669 4.67571 4.83536 4.86708 4.92354 4.97996 5.06186 5.16031 5.26763 5.31711 5.48739 5.56241 5.59080 5.84061 5.86190 6.08047 6.30202 6.46398 6.71613 6.78973 7.28270 7.45795 8.86879 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011604 B = 0.004670 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.415207 B = 5993.929205 C = 7031.310326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.417 6.417 3 C 0.043 3.957 4 C 0.101 3.899 5 N -0.592 5.592 6 C 0.273 3.727 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.006 3.994 10 N -0.930 5.930 11 Si 0.968 3.032 12 H -0.257 1.257 13 H -0.280 1.280 14 H -0.278 1.278 15 C 0.510 3.490 16 O -0.591 6.591 17 C -0.059 4.059 18 H 0.127 0.873 19 C -0.149 4.149 20 C 0.067 3.933 21 O -0.326 6.326 22 C 0.125 3.875 23 C -0.159 4.159 24 C -0.080 4.080 25 C -0.161 4.161 26 C -0.085 4.085 27 C -0.156 4.156 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.123 0.877 35 H 0.023 0.977 36 H -0.014 1.014 37 H 0.266 0.734 38 H 0.113 0.887 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.141 0.859 42 H 0.151 0.849 43 H 0.163 0.837 44 H 0.138 0.862 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 21.035 1.970 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C -0.034 4.034 4 C -0.022 4.022 5 N -0.321 5.321 6 C 0.152 3.848 7 C -0.582 4.582 8 H 0.075 0.925 9 C -0.193 4.193 10 N -0.569 5.569 11 Si 0.792 3.208 12 H -0.181 1.181 13 H -0.205 1.205 14 H -0.203 1.203 15 C 0.299 3.701 16 O -0.472 6.472 17 C -0.080 4.080 18 H 0.145 0.855 19 C -0.187 4.187 20 C -0.007 4.007 21 O -0.241 6.241 22 C 0.080 3.920 23 C -0.177 4.177 24 C -0.098 4.098 25 C -0.179 4.179 26 C -0.103 4.103 27 C -0.158 4.158 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.041 0.959 36 H 0.004 0.996 37 H 0.075 0.925 38 H 0.131 0.869 39 H 0.071 0.929 40 H 0.112 0.888 41 H 0.158 0.842 42 H 0.169 0.831 43 H 0.180 0.820 44 H 0.156 0.844 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.025 20.521 1.359 22.076 hybrid contribution 0.530 -1.345 0.161 1.455 sum -7.495 19.175 1.520 20.644 Atomic orbital electron populations 1.22863 0.79973 1.03139 1.00840 1.88035 1.21204 1.28863 1.95522 1.23237 0.93509 0.84928 1.01760 1.21947 0.93120 1.00478 0.86627 1.48117 1.64507 1.09011 1.10513 1.18606 0.95043 0.76224 0.94951 1.21723 0.96584 0.92802 1.47078 0.92491 1.25898 1.02619 0.95806 0.94954 1.70085 1.37553 0.99887 1.49411 0.85464 0.78881 0.77152 0.79278 1.18107 1.20517 1.20343 1.20844 0.76503 0.89588 0.83204 1.90649 1.50214 1.75633 1.30657 1.20305 0.99640 0.90201 0.97831 0.85529 1.22216 0.94241 0.97409 1.04827 1.23259 1.04020 0.93433 0.79959 1.85940 1.47152 1.60925 1.30069 1.18827 0.88305 0.90398 0.94491 1.20904 0.98212 1.02880 0.95706 1.21281 0.95077 0.93674 0.99767 1.21256 1.02264 0.98460 0.95948 1.20894 0.95245 0.97487 0.96713 1.19451 0.99998 0.96789 0.99526 0.93959 0.90005 0.91737 0.88586 0.93395 0.89839 0.85907 0.95902 0.99625 0.92545 0.86908 0.92948 0.88839 0.84170 0.83082 0.81995 0.84402 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.42 -14.14 10.17 -148.98 -1.51 -15.65 16 3 C 0.04 1.13 5.97 71.98 0.43 1.55 16 4 C 0.10 3.10 5.40 86.38 0.47 3.57 16 5 N -0.59 -25.82 2.42 -826.16 -2.00 -27.82 16 6 C 0.27 15.49 5.11 85.63 0.44 15.93 16 7 C -0.54 -32.09 9.39 25.60 0.24 -31.85 16 8 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 9 C 0.01 0.36 5.46 84.65 0.46 0.82 16 10 N -0.93 -58.37 13.29 21.45 0.28 -58.08 16 11 Si 0.97 45.76 29.54 68.60 2.03 47.79 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 14 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 15 C 0.51 22.11 5.57 87.66 0.49 22.60 16 16 O -0.59 -32.56 15.41 -3.04 -0.05 -32.61 16 17 C -0.06 -1.80 1.97 -12.24 -0.02 -1.82 16 18 H 0.13 2.95 5.32 -2.39 -0.01 2.94 16 19 C -0.15 -3.84 5.48 30.75 0.17 -3.67 16 20 C 0.07 1.24 7.03 72.12 0.51 1.75 16 21 O -0.33 -8.32 10.27 -91.73 -0.94 -9.26 16 22 C 0.12 3.56 6.47 22.52 0.15 3.71 16 23 C -0.16 -3.83 9.94 22.43 0.22 -3.60 16 24 C -0.08 -1.79 10.04 22.22 0.22 -1.56 16 25 C -0.16 -4.32 10.04 22.25 0.22 -4.09 16 26 C -0.08 -2.80 8.58 22.30 0.19 -2.61 16 27 C -0.16 -4.98 5.12 -19.74 -0.10 -5.08 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.05 1.22 7.46 -2.39 -0.02 1.20 16 33 H 0.08 2.79 8.03 -2.39 -0.02 2.77 16 34 H 0.12 2.64 6.37 -2.39 -0.02 2.62 16 35 H 0.02 1.37 7.64 -2.38 -0.02 1.35 16 36 H -0.01 -0.96 7.36 -2.39 -0.02 -0.98 16 37 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 38 H 0.11 2.35 7.99 -2.38 -0.02 2.33 16 39 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 43 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 44 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 45 H 0.09 3.51 7.34 -2.91 -0.02 3.49 16 Total: -1.00 -84.80 369.74 4.12 -80.68 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.98 Total: 17.37 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 5.33 Total: -2.43 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -1.71 Total: -85.90 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -2.50 Total: -57.52 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -84.80 4.12 -80.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110909144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.245 kcal (2) G-P(sol) polarization free energy of solvation -84.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds