Wall clock time and date at job start Tue Mar 31 2020 12:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99841 * 2 1 4 4 H 1.09002 * 109.47489 * 30.00035 * 3 2 1 5 5 C 1.50703 * 109.47028 * 149.99666 * 3 2 1 6 6 O 1.20827 * 119.99828 * 5.00617 * 5 3 2 7 7 O 1.34231 * 120.00065 * 185.00007 * 5 3 2 8 8 C 1.45200 * 116.99847 * 180.02562 * 7 5 3 9 9 C 1.53045 * 109.45866 * 270.06635 * 8 7 5 10 10 C 1.53183 * 109.31425 * 178.61696 * 9 8 7 11 11 N 1.46930 * 108.77758 * 54.63430 * 10 9 8 12 12 C 1.36935 * 120.63150 * 126.41280 * 11 10 9 13 13 H 1.08002 * 120.00098 * 331.82602 * 12 11 10 14 14 C 1.38811 * 120.00102 * 151.82339 * 12 11 10 15 15 N 1.31621 * 120.00007 * 343.07870 * 14 12 11 16 16 Si 1.86794 * 120.00053 * 163.08083 * 14 12 11 17 17 H 1.48492 * 109.47342 * 60.00142 * 16 14 12 18 18 H 1.48509 * 109.47133 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47292 * 299.99752 * 16 14 12 20 20 C 1.46922 * 118.73723 * 306.39346 * 11 10 9 21 21 C 1.53045 * 109.45926 * 150.00066 * 8 7 5 22 22 C 1.50700 * 109.47497 * 269.99881 * 3 2 1 23 23 C 1.38228 * 120.00175 * 145.00311 * 22 3 2 24 24 C 1.38239 * 119.99910 * 180.02562 * 23 22 3 25 25 C 1.38239 * 120.00120 * 359.95502 * 24 23 22 26 26 C 1.38241 * 119.99630 * 359.97438 * 25 24 23 27 27 C 1.38232 * 119.99875 * 0.07518 * 26 25 24 28 28 H 1.09001 * 109.46747 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46813 * 300.00117 * 1 2 3 30 30 H 1.09001 * 109.46709 * 59.99807 * 1 2 3 31 31 H 1.08993 * 109.46070 * 30.02482 * 8 7 5 32 32 H 1.09005 * 109.49594 * 298.56703 * 9 8 7 33 33 H 1.09001 * 109.49310 * 58.65996 * 9 8 7 34 34 H 1.08997 * 109.58814 * 294.84890 * 10 9 8 35 35 H 1.09003 * 109.70203 * 174.49059 * 10 9 8 36 36 H 0.96994 * 120.00329 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.58662 * 293.82223 * 20 11 10 38 38 H 1.08999 * 109.70569 * 173.46153 * 20 11 10 39 39 H 1.08994 * 109.49605 * 301.33246 * 21 8 7 40 40 H 1.08999 * 109.49581 * 61.43167 * 21 8 7 41 41 H 1.07997 * 120.00143 * 359.97434 * 23 22 3 42 42 H 1.07998 * 119.99715 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.99938 * 179.72206 * 25 24 23 44 44 H 1.07999 * 119.99300 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.99340 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3386 1.2639 0.7105 6 8 3.7880 0.2085 1.0900 7 8 4.0226 2.3994 0.9216 8 6 5.2950 2.2839 1.6116 9 6 5.0702 2.4106 3.1202 10 6 6.4096 2.2538 3.8469 11 7 7.3636 3.2255 3.2953 12 6 8.0324 4.0913 4.1188 13 1 7.5864 4.4023 5.0520 14 6 9.2836 4.5694 3.7542 15 7 9.9722 3.9598 2.8126 16 14 9.9899 6.0777 4.6000 17 1 10.1166 5.8150 6.0560 18 1 11.3285 6.3818 4.0330 19 1 9.0862 7.2358 4.3827 20 6 7.5867 3.2503 1.8433 21 6 6.2342 3.3960 1.1389 22 6 2.2146 1.7644 -1.4208 23 6 2.0571 3.0988 -1.7455 24 6 2.2441 3.5197 -3.0489 25 6 2.5895 2.6063 -4.0274 26 6 2.7484 1.2721 -3.7023 27 6 2.5604 0.8511 -2.3991 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 5.7408 1.3140 1.3913 32 1 4.6474 3.3900 3.3440 33 1 4.3828 1.6325 3.4521 34 1 6.7900 1.2433 3.6979 35 1 6.2735 2.4397 4.9123 36 1 10.8463 4.2940 2.5576 37 1 8.0631 2.3210 1.5309 38 1 8.2264 4.0939 1.5841 39 1 6.3752 3.3192 0.0609 40 1 5.8003 4.3660 1.3814 41 1 1.7872 3.8123 -0.9811 42 1 2.1207 4.5621 -3.3027 43 1 2.7311 2.9344 -5.0465 44 1 3.0178 0.5585 -4.4669 45 1 2.6841 -0.1913 -2.1453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120829360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:24 Heat of formation + Delta-G solvation = -79.929418 kcal Electronic energy + Delta-G solvation = -27169.452567 eV Core-core repulsion = 23345.922275 eV Total energy + Delta-G solvation = -3823.530293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.72189 -39.39938 -37.99585 -37.17463 -35.73956 -32.83614 -32.25231 -31.07614 -30.36893 -29.65734 -28.24147 -26.33196 -25.05633 -22.84259 -22.74341 -22.21173 -21.77074 -20.50876 -19.32264 -17.88892 -17.31794 -17.16576 -16.64622 -16.34797 -15.93451 -15.25931 -14.85305 -14.80761 -14.74787 -14.32489 -13.78163 -13.58817 -13.55218 -13.23096 -13.18002 -12.94325 -12.78018 -12.50977 -12.40308 -11.81729 -11.54024 -11.50893 -11.21701 -11.19518 -11.05736 -10.74235 -10.73302 -10.56134 -10.35441 -10.20074 -10.06133 -9.88017 -9.66563 -9.44902 -9.09557 -8.98039 -8.49611 -6.73406 -5.82089 -3.24972 1.03399 1.22962 2.31651 2.43331 3.37932 3.43596 3.44848 3.49717 3.88460 4.30803 4.47630 4.58230 4.78090 4.80964 4.86065 4.95664 5.06593 5.08326 5.25911 5.30541 5.36137 5.36554 5.40614 5.41301 5.52962 5.70634 5.73915 5.84786 5.99277 6.22713 6.24094 6.25823 6.32249 6.33611 6.41270 6.50361 6.57920 6.70502 6.72565 6.77455 6.85143 6.95408 7.28043 7.57724 7.76915 7.96189 8.41345 9.17205 9.79931 10.36827 11.27125 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.003092 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.863983 B = 9052.073137 C = 9932.971048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.143 3.857 4 H 0.105 0.895 5 C 0.463 3.537 6 O -0.487 6.487 7 O -0.351 6.351 8 C 0.100 3.900 9 C -0.146 4.146 10 C 0.149 3.851 11 N -0.592 5.592 12 C -0.256 4.256 13 H 0.067 0.933 14 C 0.003 3.997 15 N -0.903 5.903 16 Si 0.905 3.095 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.174 3.826 21 C -0.134 4.134 22 C -0.118 4.118 23 C -0.092 4.092 24 C -0.122 4.122 25 C -0.111 4.111 26 C -0.125 4.125 27 C -0.088 4.088 28 H 0.094 0.906 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.022 0.978 35 H 0.061 0.939 36 H 0.255 0.745 37 H 0.022 0.978 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.000 -3.368 -11.983 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.083 3.917 4 H 0.122 0.878 5 C 0.303 3.697 6 O -0.373 6.373 7 O -0.268 6.268 8 C 0.046 3.954 9 C -0.186 4.186 10 C 0.022 3.978 11 N -0.315 5.315 12 C -0.385 4.385 13 H 0.084 0.916 14 C -0.195 4.195 15 N -0.547 5.547 16 Si 0.734 3.266 17 H -0.208 1.208 18 H -0.216 1.216 19 H -0.210 1.210 20 C 0.048 3.952 21 C -0.173 4.173 22 C -0.119 4.119 23 C -0.111 4.111 24 C -0.140 4.140 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.106 4.106 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.115 0.885 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.518 -3.810 -11.882 23.166 hybrid contribution 0.271 0.844 0.406 0.975 sum -19.247 -2.965 -11.476 22.604 Atomic orbital electron populations 1.22932 0.79859 1.03500 1.00447 1.88016 1.20295 1.24217 1.94695 1.20158 0.91791 0.87146 0.92598 0.87778 1.22924 0.86507 0.83010 0.77211 1.90671 1.67950 1.31518 1.47129 1.86526 1.35201 1.34454 1.70598 1.22991 0.79357 1.01302 0.91725 1.22476 1.00561 1.01697 0.93845 1.20858 0.87763 0.92817 0.96337 1.44112 1.47261 1.38046 1.02076 1.19155 0.97236 1.19009 1.03131 0.91551 1.25068 0.95458 0.99818 0.99186 1.70008 1.12236 1.39172 1.33300 0.86336 0.77965 0.83170 0.79087 1.20842 1.21597 1.20961 1.20809 0.90325 1.01601 0.82437 1.22458 0.97820 0.97205 0.99850 1.19899 1.03480 0.94500 0.94022 1.21019 0.98653 0.94535 0.96846 1.21130 1.00221 0.99778 0.92907 1.21245 0.98729 0.93455 0.99496 1.21167 1.00608 0.96136 0.96353 1.21051 0.96980 1.00057 0.92545 0.88778 0.93476 0.93472 0.90316 0.91317 0.92651 0.96017 0.92043 0.93452 0.95984 0.88531 0.92385 0.91441 0.85464 0.85657 0.85942 0.85813 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.81 101.05 1.09 1.32 16 2 O -0.35 -4.41 9.04 -55.14 -0.50 -4.90 16 3 C 0.14 1.77 2.84 -29.03 -0.08 1.69 16 4 H 0.10 1.01 7.70 -51.93 -0.40 0.61 16 5 C 0.46 7.61 7.24 36.01 0.26 7.87 16 6 O -0.49 -9.52 15.73 -25.46 -0.40 -9.92 16 7 O -0.35 -6.01 9.87 -39.26 -0.39 -6.40 16 8 C 0.10 1.91 2.41 -26.68 -0.06 1.84 16 9 C -0.15 -2.78 5.72 -26.61 -0.15 -2.93 16 10 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 11 N -0.59 -15.02 2.99 -172.33 -0.52 -15.54 16 12 C -0.26 -7.02 9.58 -15.06 -0.14 -7.16 16 13 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 14 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 15 N -0.90 -26.09 11.19 55.49 0.62 -25.47 16 16 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.17 4.20 5.30 -3.71 -0.02 4.18 16 21 C -0.13 -2.67 5.74 -26.61 -0.15 -2.82 16 22 C -0.12 -1.39 4.93 -104.63 -0.52 -1.91 16 23 C -0.09 -0.96 9.68 -39.58 -0.38 -1.35 16 24 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 25 C -0.11 -1.02 10.05 -39.58 -0.40 -1.42 16 26 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 27 C -0.09 -1.02 9.35 -39.58 -0.37 -1.39 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 1.62 7.16 -51.93 -0.37 1.25 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.10 2.55 6.07 -51.93 -0.31 2.24 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 45 H 0.13 1.53 7.63 -52.49 -0.40 1.13 16 LS Contribution 373.04 15.07 5.62 5.62 Total: -1.00 -32.21 373.04 -9.36 -41.58 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.94 Total: 0.54 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -1.83 Total: -2.03 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.11 Total: -41.00 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -1.29 Total: -21.22 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.21 -9.36 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120829360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.354 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds