Wall clock time and date at job start Tue Mar 31 2020 12:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99841 * 2 1 4 4 H 1.09002 * 109.47489 * 30.00035 * 3 2 1 5 5 C 1.50703 * 109.47028 * 149.99666 * 3 2 1 6 6 O 1.20827 * 119.99828 * 5.00617 * 5 3 2 7 7 O 1.34231 * 120.00065 * 185.00007 * 5 3 2 8 8 C 1.45200 * 116.99847 * 180.02562 * 7 5 3 9 9 C 1.53045 * 109.45866 * 270.06635 * 8 7 5 10 10 C 1.53183 * 109.31425 * 178.61696 * 9 8 7 11 11 N 1.46930 * 108.77758 * 54.63430 * 10 9 8 12 12 C 1.36935 * 120.63150 * 126.41280 * 11 10 9 13 13 H 1.08002 * 120.00098 * 331.82602 * 12 11 10 14 14 C 1.38811 * 120.00102 * 151.82339 * 12 11 10 15 15 N 1.31621 * 120.00007 * 343.07870 * 14 12 11 16 16 Si 1.86794 * 120.00053 * 163.08083 * 14 12 11 17 17 H 1.48492 * 109.47342 * 60.00142 * 16 14 12 18 18 H 1.48509 * 109.47133 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47292 * 299.99752 * 16 14 12 20 20 C 1.46922 * 118.73723 * 306.39346 * 11 10 9 21 21 C 1.53045 * 109.45926 * 150.00066 * 8 7 5 22 22 C 1.50700 * 109.47497 * 269.99881 * 3 2 1 23 23 C 1.38228 * 120.00175 * 145.00311 * 22 3 2 24 24 C 1.38239 * 119.99910 * 180.02562 * 23 22 3 25 25 C 1.38239 * 120.00120 * 359.95502 * 24 23 22 26 26 C 1.38241 * 119.99630 * 359.97438 * 25 24 23 27 27 C 1.38232 * 119.99875 * 0.07518 * 26 25 24 28 28 H 1.09001 * 109.46747 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46813 * 300.00117 * 1 2 3 30 30 H 1.09001 * 109.46709 * 59.99807 * 1 2 3 31 31 H 1.08993 * 109.46070 * 30.02482 * 8 7 5 32 32 H 1.09005 * 109.49594 * 298.56703 * 9 8 7 33 33 H 1.09001 * 109.49310 * 58.65996 * 9 8 7 34 34 H 1.08997 * 109.58814 * 294.84890 * 10 9 8 35 35 H 1.09003 * 109.70203 * 174.49059 * 10 9 8 36 36 H 0.96994 * 120.00329 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.58662 * 293.82223 * 20 11 10 38 38 H 1.08999 * 109.70569 * 173.46153 * 20 11 10 39 39 H 1.08994 * 109.49605 * 301.33246 * 21 8 7 40 40 H 1.08999 * 109.49581 * 61.43167 * 21 8 7 41 41 H 1.07997 * 120.00143 * 359.97434 * 23 22 3 42 42 H 1.07998 * 119.99715 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.99938 * 179.72206 * 25 24 23 44 44 H 1.07999 * 119.99300 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.99340 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3386 1.2639 0.7105 6 8 3.7880 0.2085 1.0900 7 8 4.0226 2.3994 0.9216 8 6 5.2950 2.2839 1.6116 9 6 5.0702 2.4106 3.1202 10 6 6.4096 2.2538 3.8469 11 7 7.3636 3.2255 3.2953 12 6 8.0324 4.0913 4.1188 13 1 7.5864 4.4023 5.0520 14 6 9.2836 4.5694 3.7542 15 7 9.9722 3.9598 2.8126 16 14 9.9899 6.0777 4.6000 17 1 10.1166 5.8150 6.0560 18 1 11.3285 6.3818 4.0330 19 1 9.0862 7.2358 4.3827 20 6 7.5867 3.2503 1.8433 21 6 6.2342 3.3960 1.1389 22 6 2.2146 1.7644 -1.4208 23 6 2.0571 3.0988 -1.7455 24 6 2.2441 3.5197 -3.0489 25 6 2.5895 2.6063 -4.0274 26 6 2.7484 1.2721 -3.7023 27 6 2.5604 0.8511 -2.3991 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 5.7408 1.3140 1.3913 32 1 4.6474 3.3900 3.3440 33 1 4.3828 1.6325 3.4521 34 1 6.7900 1.2433 3.6979 35 1 6.2735 2.4397 4.9123 36 1 10.8463 4.2940 2.5576 37 1 8.0631 2.3210 1.5309 38 1 8.2264 4.0939 1.5841 39 1 6.3752 3.3192 0.0609 40 1 5.8003 4.3660 1.3814 41 1 1.7872 3.8123 -0.9811 42 1 2.1207 4.5621 -3.3027 43 1 2.7311 2.9344 -5.0465 44 1 3.0178 0.5585 -4.4669 45 1 2.6841 -0.1913 -2.1453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120829360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:23 Heat of formation + Delta-G solvation = -96.567009 kcal Electronic energy + Delta-G solvation = -27170.174028 eV Core-core repulsion = 23345.922275 eV Total energy + Delta-G solvation = -3824.251753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.96078 -40.38068 -39.18860 -38.48396 -37.26100 -34.64742 -33.21485 -32.14053 -31.81423 -31.47994 -29.12212 -27.38732 -26.68889 -24.34158 -23.90984 -23.48939 -22.99471 -21.71306 -21.06331 -19.05917 -18.91809 -18.21666 -17.92339 -17.48438 -17.01306 -16.73596 -16.33004 -15.89379 -15.55452 -15.45294 -15.43796 -15.12313 -14.89531 -14.56201 -14.29517 -14.25702 -14.10600 -13.73917 -13.42569 -13.27304 -13.07032 -12.73189 -12.58565 -12.53437 -12.51713 -12.25774 -12.15785 -12.01437 -11.96803 -11.86895 -11.64254 -11.46000 -11.11871 -10.88783 -10.56393 -9.84759 -9.78782 -8.77494 -7.90828 -5.37486 0.23942 0.47654 1.05591 1.25892 1.49135 1.51503 1.58445 2.50775 2.71507 2.95277 3.25969 3.45299 3.50731 3.61811 3.75020 3.76872 3.82729 4.08545 4.11349 4.16497 4.29081 4.33457 4.47123 4.51971 4.53722 4.59887 4.66149 4.70361 4.77538 4.82360 4.83588 4.92240 4.98240 5.01247 5.12855 5.18548 5.35431 5.42335 5.49387 5.52187 5.59403 5.60805 5.65661 5.91982 6.05314 6.35157 6.63462 7.09941 7.78042 8.31721 9.16914 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.003092 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.863983 B = 9052.073137 C = 9932.971048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.381 6.381 3 C 0.151 3.849 4 H 0.134 0.866 5 C 0.460 3.540 6 O -0.524 6.524 7 O -0.343 6.343 8 C 0.106 3.894 9 C -0.132 4.132 10 C 0.146 3.854 11 N -0.609 5.609 12 C -0.269 4.269 13 H 0.071 0.929 14 C -0.048 4.048 15 N -0.935 5.935 16 Si 0.972 3.028 17 H -0.276 1.276 18 H -0.294 1.294 19 H -0.275 1.275 20 C 0.181 3.819 21 C -0.119 4.119 22 C -0.133 4.133 23 C -0.099 4.099 24 C -0.126 4.126 25 C -0.112 4.112 26 C -0.132 4.132 27 C -0.108 4.108 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.011 0.989 35 H 0.068 0.932 36 H 0.252 0.748 37 H -0.002 1.002 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.143 0.857 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.140 0.860 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.080 -1.854 -12.581 25.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.300 6.300 3 C 0.092 3.908 4 H 0.152 0.848 5 C 0.303 3.697 6 O -0.412 6.412 7 O -0.259 6.259 8 C 0.052 3.948 9 C -0.171 4.171 10 C 0.021 3.979 11 N -0.333 5.333 12 C -0.399 4.399 13 H 0.089 0.911 14 C -0.243 4.243 15 N -0.581 5.581 16 Si 0.799 3.201 17 H -0.201 1.201 18 H -0.220 1.220 19 H -0.201 1.201 20 C 0.055 3.945 21 C -0.158 4.158 22 C -0.133 4.133 23 C -0.117 4.117 24 C -0.144 4.144 25 C -0.130 4.130 26 C -0.150 4.150 27 C -0.126 4.126 28 H 0.124 0.876 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.029 0.971 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.016 0.984 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.161 0.839 42 H 0.167 0.833 43 H 0.166 0.834 44 H 0.158 0.842 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -21.645 -2.300 -12.481 25.091 hybrid contribution 0.860 0.282 0.542 1.056 sum -20.784 -2.018 -11.939 24.054 Atomic orbital electron populations 1.23170 0.77603 1.04780 1.01696 1.87983 1.22726 1.24444 1.94826 1.20199 0.89718 0.87988 0.92913 0.84843 1.23900 0.87461 0.82009 0.76318 1.90656 1.69088 1.32652 1.48801 1.86519 1.34126 1.34979 1.70313 1.22662 0.80329 0.99817 0.92016 1.22281 0.98935 1.02571 0.93353 1.20954 0.88378 0.91493 0.97125 1.44363 1.47760 1.38721 1.02448 1.19512 0.97540 1.19330 1.03529 0.91126 1.25859 0.95873 1.02471 1.00131 1.70169 1.12414 1.40601 1.34913 0.85280 0.76882 0.79747 0.78147 1.20136 1.22006 1.20082 1.20575 0.92126 0.99184 0.82586 1.22162 0.95684 0.97711 1.00209 1.19913 1.04785 0.95231 0.93421 1.21268 0.98458 0.94122 0.97887 1.21491 0.99283 1.01078 0.92507 1.21604 0.97584 0.92988 1.00828 1.21421 1.00301 0.97171 0.96067 1.21105 0.98212 0.99667 0.93625 0.87604 0.92011 0.92340 0.92235 0.90525 0.91275 0.97073 0.91303 0.93877 0.98408 0.91153 0.90832 0.90914 0.83928 0.83299 0.83434 0.84229 0.86646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.81 113.37 1.23 1.55 16 2 O -0.38 -9.15 9.04 -129.95 -1.17 -10.33 16 3 C 0.15 3.54 2.84 29.10 0.08 3.62 16 4 H 0.13 2.25 7.70 -2.39 -0.02 2.23 16 5 C 0.46 14.81 7.24 71.24 0.52 15.33 16 6 O -0.52 -20.66 15.73 28.38 0.45 -20.21 16 7 O -0.34 -11.30 9.87 -51.42 -0.51 -11.81 16 8 C 0.11 4.01 2.41 30.62 0.07 4.08 16 9 C -0.13 -4.89 5.72 30.67 0.18 -4.72 16 10 C 0.15 6.38 6.52 86.36 0.56 6.94 16 11 N -0.61 -31.26 2.99 -699.11 -2.09 -33.36 16 12 C -0.27 -14.83 9.58 84.03 0.81 -14.02 16 13 H 0.07 3.75 7.88 -2.91 -0.02 3.72 16 14 C -0.05 -2.65 4.92 84.86 0.42 -2.24 16 15 N -0.94 -55.25 11.19 21.65 0.24 -55.00 16 16 Si 0.97 44.40 29.59 68.60 2.03 46.43 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 C 0.18 8.94 5.30 86.36 0.46 9.39 16 21 C -0.12 -4.68 5.74 30.67 0.18 -4.50 16 22 C -0.13 -2.93 4.93 -19.87 -0.10 -3.03 16 23 C -0.10 -1.82 9.68 22.27 0.22 -1.61 16 24 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 25 C -0.11 -1.76 10.05 22.27 0.22 -1.54 16 26 C -0.13 -2.42 10.05 22.27 0.22 -2.19 16 27 C -0.11 -2.44 9.35 22.27 0.21 -2.23 16 28 H 0.11 1.21 8.14 -2.39 -0.02 1.20 16 29 H 0.06 0.69 8.08 -2.39 -0.02 0.67 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 2.50 7.16 -2.39 -0.02 2.48 16 32 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 2.85 7.93 -2.39 -0.02 2.83 16 36 H 0.25 14.41 8.31 -92.71 -0.77 13.63 16 37 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 38 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 39 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 43 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 44 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 45 H 0.12 2.82 7.63 -2.91 -0.02 2.80 16 Total: -1.00 -70.31 373.04 5.40 -64.91 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.97 Total: 16.32 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 5.49 Total: 3.05 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -1.85 Total: -88.36 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -1.24 Total: -42.35 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -70.31 5.40 -64.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120829360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.660 kcal (2) G-P(sol) polarization free energy of solvation -70.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds