Wall clock time and date at job start Tue Mar 31 2020 12:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99956 * 2 1 4 4 H 1.08999 * 110.53728 * 27.38484 * 3 2 1 5 5 C 1.54888 * 110.48531 * 264.77440 * 3 2 1 6 6 C 1.54886 * 102.74848 * 203.37859 * 5 3 2 7 7 C 1.54377 * 104.19850 * 37.96854 * 6 5 3 8 8 C 1.53878 * 106.54299 * 336.35199 * 7 6 5 9 9 H 1.09002 * 110.03175 * 119.34751 * 8 7 6 10 10 N 1.46495 * 110.03328 * 240.72499 * 8 7 6 11 11 C 1.34773 * 120.00611 * 272.91495 * 10 8 7 12 12 O 1.21282 * 119.99832 * 359.97438 * 11 10 8 13 13 C 1.50700 * 120.00350 * 180.02562 * 11 10 8 14 14 C 1.50697 * 109.47171 * 179.97438 * 13 11 10 15 15 C 1.38326 * 119.97040 * 89.99327 * 14 13 11 16 16 C 1.38273 * 120.14156 * 179.72559 * 15 14 13 17 17 C 1.38120 * 120.06852 * 0.27615 * 16 15 14 18 18 C 1.38862 * 119.93189 * 0.02562 * 17 16 15 19 19 O 1.35754 * 120.06994 * 179.97438 * 18 17 16 20 20 C 1.34828 * 116.99877 * 354.46583 * 19 18 17 21 21 H 1.08000 * 120.00232 * 5.05258 * 20 19 18 22 22 C 1.38656 * 119.99622 * 185.05787 * 20 19 18 23 23 N 1.31556 * 120.00227 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99818 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46780 * 60.00089 * 24 22 20 26 26 H 1.48495 * 109.47264 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47369 * 300.00352 * 24 22 20 28 28 C 1.38083 * 119.96259 * 270.27260 * 14 13 11 29 29 H 1.09001 * 109.46753 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47415 * 299.99741 * 1 2 3 31 31 H 1.09001 * 109.46925 * 60.00310 * 1 2 3 32 32 H 1.09000 * 110.75651 * 321.69129 * 5 3 2 33 33 H 1.09001 * 110.75782 * 85.06302 * 5 3 2 34 34 H 1.08995 * 110.48625 * 156.62252 * 6 5 3 35 35 H 1.09000 * 110.48873 * 279.13200 * 6 5 3 36 36 H 1.09003 * 110.04545 * 217.09431 * 7 6 5 37 37 H 1.08993 * 110.06943 * 95.62696 * 7 6 5 38 38 H 0.97005 * 119.99702 * 92.90816 * 10 8 7 39 39 H 1.08997 * 109.47211 * 59.99470 * 13 11 10 40 40 H 1.08996 * 109.46572 * 299.99254 * 13 11 10 41 41 H 1.08001 * 119.92395 * 0.02562 * 15 14 13 42 42 H 1.07999 * 119.96892 * 180.29878 * 16 15 14 43 43 H 1.08004 * 120.03603 * 179.97438 * 17 16 15 44 44 H 0.97000 * 120.00401 * 179.97438 * 23 22 20 45 45 H 1.07998 * 120.03425 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3378 2.0235 0.4695 5 6 2.3514 1.7470 -1.4449 6 6 3.4600 2.8062 -1.2259 7 6 4.2960 2.2433 -0.0565 8 6 3.3731 1.2898 0.7226 9 1 3.7872 0.2815 0.7167 10 7 3.2156 1.7589 2.1014 11 6 4.1034 1.3881 3.0451 12 8 5.0326 0.6655 2.7530 13 6 3.9410 1.8703 4.4636 14 6 5.0557 1.3166 5.3132 15 6 6.2358 2.0248 5.4521 16 6 7.2587 1.5227 6.2354 17 6 7.1072 0.3090 6.8770 18 6 5.9262 -0.4073 6.7346 19 8 5.7744 -1.6008 7.3636 20 6 6.8478 -2.0889 8.0174 21 1 7.7486 -1.4980 8.0934 22 6 6.7951 -3.3497 8.5921 23 7 5.6977 -4.0693 8.4998 24 14 8.2824 -4.0264 9.4973 25 1 8.6223 -3.1292 10.6308 26 1 7.9714 -5.3825 10.0160 27 1 9.4357 -4.1048 8.5652 28 6 4.9002 0.1000 5.9475 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.7299 0.9063 -2.0265 33 1 1.4818 2.1922 -1.9283 34 1 4.0747 2.9057 -2.1205 35 1 3.0217 3.7672 -0.9566 36 1 4.6265 3.0552 0.5913 37 1 5.1575 1.6976 -0.4412 38 1 2.4722 2.3367 2.3352 39 1 2.9825 1.5301 4.8556 40 1 3.9756 2.9595 4.4832 41 1 6.3565 2.9742 4.9517 42 1 8.1770 2.0802 6.3458 43 1 7.9067 -0.0828 7.4883 44 1 5.6609 -4.9515 8.9016 45 1 3.9802 -0.4545 5.8353 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121071344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:14 Heat of formation + Delta-G solvation = -91.346830 kcal Electronic energy + Delta-G solvation = -26154.262061 eV Core-core repulsion = 22330.236672 eV Total energy + Delta-G solvation = -3824.025389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.22751 -39.11871 -38.43310 -36.58017 -36.16343 -33.66329 -32.31444 -31.88479 -29.20015 -28.63086 -28.32672 -26.79064 -25.95637 -25.11620 -21.79510 -21.49212 -21.26127 -20.42450 -19.97128 -17.67168 -17.41685 -17.13705 -16.74310 -16.29668 -15.55515 -15.25726 -14.93647 -14.85232 -14.57501 -14.30851 -14.24665 -13.84178 -13.58242 -13.47988 -13.23455 -12.84597 -12.59939 -12.47065 -12.25748 -12.11537 -11.72032 -11.66783 -11.45211 -11.43577 -11.19930 -11.00326 -10.86633 -10.76189 -10.71141 -10.54489 -10.39657 -10.01584 -9.62113 -9.25906 -9.04368 -8.75688 -7.98119 -7.13339 -6.36378 -3.95372 2.17155 2.47643 2.84364 3.11093 3.18209 3.20775 3.22533 3.51438 4.03672 4.14830 4.34747 4.57834 4.63098 4.78732 4.96663 4.99093 5.01381 5.08767 5.15034 5.17605 5.24288 5.27359 5.29719 5.36139 5.41306 5.52415 5.55745 5.66911 5.73618 5.79222 5.82978 5.89879 5.98838 6.01431 6.25762 6.42209 6.46871 6.74161 6.90279 7.00198 7.15039 7.34978 7.44558 7.50304 7.52865 7.91378 8.08666 8.39880 9.09274 9.80693 10.81977 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.002560 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.125788 B =10932.853527 C =11806.837946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.078 3.922 4 H 0.072 0.928 5 C -0.143 4.143 6 C -0.122 4.122 7 C -0.132 4.132 8 C 0.142 3.858 9 H 0.103 0.897 10 N -0.734 5.734 11 C 0.515 3.485 12 O -0.514 6.514 13 C -0.093 4.093 14 C -0.033 4.033 15 C -0.196 4.196 16 C -0.075 4.075 17 C -0.231 4.231 18 C 0.155 3.845 19 O -0.180 6.180 20 C -0.391 4.391 21 H 0.091 0.909 22 C 0.038 3.962 23 N -0.865 5.865 24 Si 0.940 3.060 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.173 4.173 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.395 0.605 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.269 0.731 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.615 15.656 -17.049 25.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C 0.019 3.981 4 H 0.090 0.910 5 C -0.181 4.181 6 C -0.160 4.160 7 C -0.170 4.170 8 C 0.037 3.963 9 H 0.121 0.879 10 N -0.388 5.388 11 C 0.301 3.699 12 O -0.388 6.388 13 C -0.133 4.133 14 C -0.034 4.034 15 C -0.215 4.215 16 C -0.093 4.093 17 C -0.251 4.251 18 C 0.101 3.899 19 O -0.084 6.084 20 C -0.467 4.467 21 H 0.108 0.892 22 C -0.165 4.165 23 N -0.500 5.500 24 Si 0.765 3.235 25 H -0.196 1.196 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.193 4.193 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.229 0.771 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.077 14.534 -17.136 24.234 hybrid contribution 0.179 0.168 0.531 0.585 sum -8.898 14.702 -16.604 23.896 Atomic orbital electron populations 1.22805 0.80939 1.03043 0.99775 1.87993 1.19719 1.26902 1.94863 1.23258 0.94142 0.85041 0.95637 0.91043 1.22920 0.99105 0.99575 0.96504 1.22307 0.96968 0.98018 0.98691 1.22538 0.98362 0.99193 0.96953 1.21558 0.93931 1.00119 0.80718 0.87896 1.46151 1.30566 1.53323 1.08712 1.20763 0.81912 0.80264 0.86964 1.90766 1.31058 1.35051 1.81878 1.20593 0.99884 1.01807 0.91049 1.18661 0.94054 0.94289 0.96362 1.20332 0.94603 1.01132 1.05454 1.20668 0.97478 0.95116 0.96086 1.21171 0.99533 0.97306 1.07044 1.19272 0.92896 0.87058 0.90646 1.83976 1.37271 1.28848 1.58277 1.21266 0.92353 1.00652 1.32428 0.89199 1.25268 0.98493 0.95103 0.97669 1.70032 1.26421 1.11217 1.42373 0.85796 0.80034 0.78295 0.79377 1.19564 1.20331 1.19531 1.19946 0.99660 0.96965 1.02690 0.89459 0.93955 0.94131 0.90002 0.91151 0.91061 0.91428 0.90805 0.90589 0.77070 0.88331 0.88467 0.87997 0.87519 0.85648 0.92077 0.86860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.33 16 2 O -0.38 -4.06 10.41 -35.23 -0.37 -4.42 16 3 C 0.08 0.67 3.05 -25.07 -0.08 0.60 16 4 H 0.07 0.48 7.41 -51.93 -0.38 0.10 16 5 C -0.14 -1.02 6.62 -24.74 -0.16 -1.18 16 6 C -0.12 -0.83 6.83 -25.01 -0.17 -1.00 16 7 C -0.13 -1.24 6.60 -25.55 -0.17 -1.41 16 8 C 0.14 1.56 2.99 -66.81 -0.20 1.36 16 9 H 0.10 1.50 7.51 -51.93 -0.39 1.11 16 10 N -0.73 -7.91 4.99 -52.72 -0.26 -8.18 16 11 C 0.51 7.69 7.82 -10.99 -0.09 7.61 16 12 O -0.51 -10.39 15.70 5.56 0.09 -10.30 16 13 C -0.09 -1.27 5.83 -29.04 -0.17 -1.44 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 15 C -0.20 -3.64 9.70 -39.54 -0.38 -4.02 16 16 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 17 C -0.23 -5.36 9.17 -39.39 -0.36 -5.72 16 18 C 0.15 3.97 6.65 -39.10 -0.26 3.71 16 19 O -0.18 -5.38 9.76 0.04 0.00 -5.38 16 20 C -0.39 -11.37 9.49 30.89 0.29 -11.08 16 21 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 22 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 23 N -0.87 -26.21 13.67 55.48 0.76 -25.45 16 24 Si 0.94 21.24 29.55 -169.99 -5.02 16.22 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 28 C -0.17 -3.92 9.65 -39.39 -0.38 -4.30 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.27 8.11 -51.93 -0.42 -0.15 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.71 7.92 -51.93 -0.41 0.30 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.40 2.89 8.35 -40.82 -0.34 2.55 16 39 H 0.10 1.15 8.09 -51.93 -0.42 0.73 16 40 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 41 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.13 2.88 5.64 -52.48 -0.30 2.58 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.11 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -36.03 376.32 -7.84 -43.86 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.72 Total: 5.48 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -1.98 Total: -17.50 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.50 Total: -33.62 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.28 Total: -20.10 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.03 -7.84 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121071344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.484 kcal (2) G-P(sol) polarization free energy of solvation -36.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds