Wall clock time and date at job start Tue Mar 31 2020 12:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99956 * 2 1 4 4 H 1.08999 * 110.53728 * 27.38484 * 3 2 1 5 5 C 1.54888 * 110.48531 * 264.77440 * 3 2 1 6 6 C 1.54886 * 102.74848 * 203.37859 * 5 3 2 7 7 C 1.54377 * 104.19850 * 37.96854 * 6 5 3 8 8 C 1.53878 * 106.54299 * 336.35199 * 7 6 5 9 9 H 1.09002 * 110.03175 * 119.34751 * 8 7 6 10 10 N 1.46495 * 110.03328 * 240.72499 * 8 7 6 11 11 C 1.34773 * 120.00611 * 272.91495 * 10 8 7 12 12 O 1.21282 * 119.99832 * 359.97438 * 11 10 8 13 13 C 1.50700 * 120.00350 * 180.02562 * 11 10 8 14 14 C 1.50697 * 109.47171 * 179.97438 * 13 11 10 15 15 C 1.38326 * 119.97040 * 89.99327 * 14 13 11 16 16 C 1.38273 * 120.14156 * 179.72559 * 15 14 13 17 17 C 1.38120 * 120.06852 * 0.27615 * 16 15 14 18 18 C 1.38862 * 119.93189 * 0.02562 * 17 16 15 19 19 O 1.35754 * 120.06994 * 179.97438 * 18 17 16 20 20 C 1.34828 * 116.99877 * 354.46583 * 19 18 17 21 21 H 1.08000 * 120.00232 * 5.05258 * 20 19 18 22 22 C 1.38656 * 119.99622 * 185.05787 * 20 19 18 23 23 N 1.31556 * 120.00227 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99818 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46780 * 60.00089 * 24 22 20 26 26 H 1.48495 * 109.47264 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47369 * 300.00352 * 24 22 20 28 28 C 1.38083 * 119.96259 * 270.27260 * 14 13 11 29 29 H 1.09001 * 109.46753 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47415 * 299.99741 * 1 2 3 31 31 H 1.09001 * 109.46925 * 60.00310 * 1 2 3 32 32 H 1.09000 * 110.75651 * 321.69129 * 5 3 2 33 33 H 1.09001 * 110.75782 * 85.06302 * 5 3 2 34 34 H 1.08995 * 110.48625 * 156.62252 * 6 5 3 35 35 H 1.09000 * 110.48873 * 279.13200 * 6 5 3 36 36 H 1.09003 * 110.04545 * 217.09431 * 7 6 5 37 37 H 1.08993 * 110.06943 * 95.62696 * 7 6 5 38 38 H 0.97005 * 119.99702 * 92.90816 * 10 8 7 39 39 H 1.08997 * 109.47211 * 59.99470 * 13 11 10 40 40 H 1.08996 * 109.46572 * 299.99254 * 13 11 10 41 41 H 1.08001 * 119.92395 * 0.02562 * 15 14 13 42 42 H 1.07999 * 119.96892 * 180.29878 * 16 15 14 43 43 H 1.08004 * 120.03603 * 179.97438 * 17 16 15 44 44 H 0.97000 * 120.00401 * 179.97438 * 23 22 20 45 45 H 1.07998 * 120.03425 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3378 2.0235 0.4695 5 6 2.3514 1.7470 -1.4449 6 6 3.4600 2.8062 -1.2259 7 6 4.2960 2.2433 -0.0565 8 6 3.3731 1.2898 0.7226 9 1 3.7872 0.2815 0.7167 10 7 3.2156 1.7589 2.1014 11 6 4.1034 1.3881 3.0451 12 8 5.0326 0.6655 2.7530 13 6 3.9410 1.8703 4.4636 14 6 5.0557 1.3166 5.3132 15 6 6.2358 2.0248 5.4521 16 6 7.2587 1.5227 6.2354 17 6 7.1072 0.3090 6.8770 18 6 5.9262 -0.4073 6.7346 19 8 5.7744 -1.6008 7.3636 20 6 6.8478 -2.0889 8.0174 21 1 7.7486 -1.4980 8.0934 22 6 6.7951 -3.3497 8.5921 23 7 5.6977 -4.0693 8.4998 24 14 8.2824 -4.0264 9.4973 25 1 8.6223 -3.1292 10.6308 26 1 7.9714 -5.3825 10.0160 27 1 9.4357 -4.1048 8.5652 28 6 4.9002 0.1000 5.9475 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.7299 0.9063 -2.0265 33 1 1.4818 2.1922 -1.9283 34 1 4.0747 2.9057 -2.1205 35 1 3.0217 3.7672 -0.9566 36 1 4.6265 3.0552 0.5913 37 1 5.1575 1.6976 -0.4412 38 1 2.4722 2.3367 2.3352 39 1 2.9825 1.5301 4.8556 40 1 3.9756 2.9595 4.4832 41 1 6.3565 2.9742 4.9517 42 1 8.1770 2.0802 6.3458 43 1 7.9067 -0.0828 7.4883 44 1 5.6609 -4.9515 8.9016 45 1 3.9802 -0.4545 5.8353 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121071344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:13 Heat of formation + Delta-G solvation = -117.013610 kcal Electronic energy + Delta-G solvation = -26155.375056 eV Core-core repulsion = 22330.236672 eV Total energy + Delta-G solvation = -3825.138384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31861 -40.64308 -39.60918 -38.18128 -37.11283 -34.67563 -34.33851 -33.38986 -30.91525 -29.44480 -29.26013 -27.90370 -27.23683 -26.64823 -23.33534 -22.96143 -22.12284 -21.56600 -20.97668 -19.51127 -18.82242 -18.30925 -17.88638 -17.24015 -16.81167 -16.58890 -16.22150 -16.10160 -15.78710 -15.64089 -15.47407 -15.41209 -14.89019 -14.56642 -14.44462 -14.32450 -14.01058 -13.61714 -13.49582 -13.14039 -12.95639 -12.93277 -12.65641 -12.47741 -12.37524 -12.27454 -12.21105 -12.12792 -12.04980 -11.66986 -11.52194 -11.21527 -11.00200 -10.79706 -10.62363 -10.01408 -9.63484 -8.97602 -8.47288 -6.16077 0.51979 0.76137 1.32885 1.44743 1.49972 1.68445 2.14024 2.18647 2.79720 2.87080 3.17264 3.45176 3.47004 3.70536 3.81495 3.93537 4.10547 4.14105 4.19619 4.31876 4.38253 4.41823 4.44739 4.52445 4.56057 4.56236 4.59057 4.64563 4.68205 4.73909 4.87151 4.95664 5.01189 5.08238 5.12511 5.16155 5.16992 5.30733 5.34740 5.54787 5.65264 5.72925 5.75522 6.02439 6.23966 6.27778 6.58323 6.97000 7.33254 7.78943 8.76309 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.002560 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.125788 B =10932.853527 C =11806.837946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.080 3.920 4 H 0.100 0.900 5 C -0.138 4.138 6 C -0.111 4.111 7 C -0.129 4.129 8 C 0.136 3.864 9 H 0.056 0.944 10 N -0.711 5.711 11 C 0.514 3.486 12 O -0.579 6.579 13 C -0.090 4.090 14 C -0.026 4.026 15 C -0.179 4.179 16 C -0.074 4.074 17 C -0.247 4.247 18 C 0.111 3.889 19 O -0.235 6.235 20 C -0.416 4.416 21 H 0.100 0.900 22 C -0.025 4.025 23 N -0.923 5.923 24 Si 1.020 2.980 25 H -0.254 1.254 26 H -0.270 1.270 27 H -0.260 1.260 28 C -0.194 4.194 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.417 0.583 39 H 0.120 0.880 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.118 0.882 44 H 0.273 0.727 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.946 19.680 -18.405 28.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C 0.022 3.978 4 H 0.118 0.882 5 C -0.177 4.177 6 C -0.149 4.149 7 C -0.168 4.168 8 C 0.030 3.970 9 H 0.074 0.926 10 N -0.365 5.365 11 C 0.301 3.699 12 O -0.457 6.457 13 C -0.129 4.129 14 C -0.027 4.027 15 C -0.198 4.198 16 C -0.092 4.092 17 C -0.267 4.267 18 C 0.061 3.939 19 O -0.142 6.142 20 C -0.492 4.492 21 H 0.118 0.882 22 C -0.222 4.222 23 N -0.562 5.562 24 Si 0.839 3.161 25 H -0.178 1.178 26 H -0.194 1.194 27 H -0.184 1.184 28 C -0.213 4.213 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.255 0.745 39 H 0.138 0.862 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.164 0.836 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.465 18.651 -18.531 27.944 hybrid contribution 0.184 -0.820 0.741 1.120 sum -9.281 17.832 -17.790 26.844 Atomic orbital electron populations 1.22972 0.79315 1.03563 1.01239 1.87959 1.21668 1.28385 1.95110 1.23347 0.93026 0.84964 0.96484 0.88244 1.22908 1.00115 0.99286 0.95349 1.22286 0.96393 0.98564 0.97662 1.22478 0.97885 0.98565 0.97894 1.21607 0.96007 0.98217 0.81125 0.92596 1.45930 1.30038 1.52365 1.08120 1.20988 0.81546 0.79416 0.87917 1.90760 1.33967 1.38070 1.82909 1.20711 0.98696 1.04517 0.88971 1.19216 0.96002 0.92430 0.95044 1.20978 0.93317 1.02196 1.03264 1.21142 0.99459 0.93738 0.94834 1.21304 0.98548 0.98824 1.07997 1.19880 0.95127 0.86744 0.92144 1.83934 1.38333 1.31259 1.60693 1.21799 0.92883 1.01545 1.32934 0.88242 1.26636 1.02146 0.94980 0.98431 1.70187 1.29293 1.11960 1.44716 0.84635 0.75481 0.77773 0.78212 1.17811 1.19420 1.18434 1.20223 0.98919 0.98767 1.03400 0.89629 0.92885 0.92144 0.91511 0.88698 0.90270 0.89162 0.90604 0.92545 0.74495 0.86174 0.83453 0.83336 0.83609 0.86426 0.91841 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.85 113.37 1.23 1.56 16 2 O -0.41 -8.58 10.41 -148.98 -1.55 -10.13 16 3 C 0.08 1.22 3.05 31.67 0.10 1.32 16 4 H 0.10 0.94 7.41 -2.39 -0.02 0.92 16 5 C -0.14 -1.62 6.62 31.88 0.21 -1.41 16 6 C -0.11 -1.17 6.83 31.71 0.22 -0.95 16 7 C -0.13 -2.26 6.60 31.36 0.21 -2.05 16 8 C 0.14 2.88 2.99 45.72 0.14 3.02 16 9 H 0.06 1.74 7.51 -2.39 -0.02 1.72 16 10 N -0.71 -13.75 4.99 -439.11 -2.19 -15.94 16 11 C 0.51 14.53 7.82 87.66 0.69 15.22 16 12 O -0.58 -23.67 15.70 -3.04 -0.05 -23.72 16 13 C -0.09 -2.13 5.83 29.10 0.17 -1.96 16 14 C -0.03 -0.95 4.37 -19.88 -0.09 -1.03 16 15 C -0.18 -6.02 9.70 22.30 0.22 -5.80 16 16 C -0.07 -2.76 10.04 22.25 0.22 -2.53 16 17 C -0.25 -11.72 9.17 22.39 0.21 -11.52 16 18 C 0.11 6.02 6.65 22.58 0.15 6.17 16 19 O -0.24 -15.15 9.76 -22.77 -0.22 -15.37 16 20 C -0.42 -25.67 9.49 67.92 0.64 -25.02 16 21 H 0.10 5.65 5.20 -2.91 -0.02 5.64 16 22 C -0.02 -1.49 5.49 84.83 0.47 -1.02 16 23 N -0.92 -59.27 13.67 21.61 0.30 -58.97 16 24 Si 1.02 44.95 29.55 68.60 2.03 46.97 16 25 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 28 C -0.19 -9.07 9.65 22.39 0.22 -8.86 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.09 16 30 H 0.05 0.56 8.11 -2.39 -0.02 0.54 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 1.28 7.92 -2.39 -0.02 1.27 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.42 4.44 8.35 -92.70 -0.77 3.67 16 39 H 0.12 2.41 8.09 -2.39 -0.02 2.39 16 40 H 0.15 2.09 8.09 -2.39 -0.02 2.07 16 41 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 42 H 0.15 4.27 8.06 -2.91 -0.02 4.24 16 43 H 0.12 5.61 5.64 -2.91 -0.02 5.59 16 44 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 45 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -88.50 376.32 3.52 -84.98 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.23 Total: 27.07 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 4.99 Total: -34.89 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -1.89 Total: -74.91 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -1.82 Total: -49.22 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -88.50 3.52 -84.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121071344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.034 kcal (2) G-P(sol) polarization free energy of solvation -88.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds