Wall clock time and date at job start Tue Mar 31 2020 12:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00017 * 2 1 4 4 H 1.09003 * 110.05355 * 28.57704 * 3 2 1 5 5 C 1.54086 * 110.15910 * 267.11259 * 3 2 1 6 6 C 1.54260 * 106.62261 * 240.87910 * 5 3 2 7 7 C 1.54890 * 104.19452 * 336.28033 * 6 5 3 8 8 C 1.54259 * 110.03330 * 149.99765 * 3 2 1 9 9 H 1.09000 * 110.48901 * 24.08678 * 8 3 2 10 10 N 1.46506 * 110.48838 * 261.57019 * 8 3 2 11 11 C 1.34770 * 119.99773 * 156.83903 * 10 8 3 12 12 O 1.21277 * 120.00681 * 0.02562 * 11 10 8 13 13 C 1.50708 * 119.99899 * 180.02562 * 11 10 8 14 14 C 1.50698 * 109.47285 * 180.02562 * 13 11 10 15 15 C 1.38302 * 119.93220 * 89.99841 * 14 13 11 16 16 C 1.38096 * 120.07298 * 180.02562 * 15 14 13 17 17 C 1.38882 * 119.92605 * 0.02562 * 16 15 14 18 18 O 1.35750 * 120.06655 * 179.97438 * 17 16 15 19 19 C 1.34823 * 117.00295 * 5.53359 * 18 17 16 20 20 H 1.08007 * 119.99746 * 354.93971 * 19 18 17 21 21 C 1.38658 * 120.00285 * 174.94131 * 19 18 17 22 22 N 1.31552 * 119.99655 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00075 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46975 * 89.99693 * 23 21 19 25 25 H 1.48501 * 109.47132 * 210.00050 * 23 21 19 26 26 H 1.48502 * 109.46965 * 329.99906 * 23 21 19 27 27 C 1.38881 * 119.86105 * 0.25221 * 17 16 15 28 28 C 1.38097 * 119.93158 * 359.49046 * 27 17 16 29 29 H 1.09001 * 109.47624 * 300.00006 * 1 2 3 30 30 H 1.08999 * 109.47322 * 60.00931 * 1 2 3 31 31 H 1.09006 * 109.47237 * 180.02562 * 1 2 3 32 32 H 1.09005 * 110.11211 * 121.53487 * 5 3 2 33 33 H 1.09006 * 109.96751 * 0.14463 * 5 3 2 34 34 H 1.09004 * 110.48834 * 217.60257 * 6 5 3 35 35 H 1.09006 * 110.60247 * 95.01298 * 6 5 3 36 36 H 1.08995 * 110.75413 * 279.62549 * 7 6 5 37 37 H 1.09004 * 110.75767 * 156.26171 * 7 6 5 38 38 H 0.96998 * 119.99770 * 336.84425 * 10 8 3 39 39 H 1.08997 * 109.46995 * 59.99893 * 13 11 10 40 40 H 1.09005 * 109.46741 * 300.00446 * 13 11 10 41 41 H 1.08001 * 119.96530 * 359.97438 * 15 14 13 42 42 H 1.07993 * 120.03856 * 180.02562 * 16 15 14 43 43 H 0.96997 * 120.00525 * 0.02562 * 22 21 19 44 44 H 1.08004 * 120.02921 * 179.72691 * 27 17 16 45 45 H 1.08004 * 119.96449 * 180.23291 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3408 2.0127 0.4898 5 6 2.2927 1.7610 -1.4446 6 6 3.8151 1.9888 -1.5457 7 6 4.2567 2.2571 -0.0856 8 6 3.3717 1.2777 0.7247 9 1 3.7952 0.2736 0.7027 10 7 3.2265 1.7416 2.1068 11 6 4.1293 1.3765 3.0384 12 8 5.0622 0.6644 2.7327 13 6 3.9797 1.8532 4.4602 14 6 5.1106 1.3088 5.2943 15 6 6.2843 2.0294 5.4200 16 6 7.3228 1.5330 6.1831 17 6 7.1877 0.3084 6.8242 18 8 8.2068 -0.1825 7.5747 19 6 9.2775 0.6176 7.7512 20 1 9.3331 1.5664 7.2382 21 6 10.3074 0.2224 8.5914 22 7 10.2394 -0.9331 9.2166 23 14 11.7905 1.3312 8.8366 24 1 11.5415 2.2453 9.9802 25 1 12.9885 0.5003 9.1187 26 1 12.0205 2.1296 7.6057 27 6 6.0099 -0.4155 6.6913 28 6 4.9732 0.0889 5.9311 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7614 2.6890 -1.6557 33 1 1.9837 0.9862 -2.1464 34 1 4.0306 2.8529 -2.1744 35 1 4.3108 1.1003 -1.9371 36 1 4.0496 3.2892 0.1972 37 1 5.3131 2.0237 0.0476 38 1 2.4805 2.3113 2.3513 39 1 3.0294 1.5026 4.8628 40 1 4.0039 2.9427 4.4826 41 1 6.3893 2.9810 4.9202 42 1 8.2389 2.0964 6.2813 43 1 9.4691 -1.5088 9.0896 44 1 5.9036 -1.3701 7.1850 45 1 4.0557 -0.4719 5.8304 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128321750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:18 Heat of formation + Delta-G solvation = -99.546302 kcal Electronic energy + Delta-G solvation = -25990.187342 eV Core-core repulsion = 22165.806398 eV Total energy + Delta-G solvation = -3824.380945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.25969 -39.21652 -38.56641 -36.69771 -36.21966 -33.76409 -32.46002 -31.28524 -30.15755 -28.65452 -28.27464 -26.66314 -25.88547 -24.68279 -21.90444 -21.60380 -20.95853 -20.78687 -20.06767 -18.31523 -17.49893 -17.15231 -16.71992 -16.37153 -15.56393 -15.40692 -15.24742 -14.69560 -14.58742 -14.17152 -14.05020 -13.89254 -13.66201 -13.50830 -13.41625 -13.11232 -12.82186 -12.70588 -12.43135 -12.07513 -11.83856 -11.64089 -11.49194 -11.19088 -11.03561 -11.01898 -10.90488 -10.81334 -10.71331 -10.28406 -10.23077 -10.10667 -9.67001 -9.34907 -9.10319 -8.70712 -8.15320 -7.17935 -6.72145 -4.00666 2.24593 2.25337 2.78521 3.04478 3.26740 3.33145 3.45150 3.46846 4.10253 4.15894 4.29155 4.50467 4.57298 4.80712 4.90057 4.92597 4.97263 5.08188 5.12762 5.15730 5.17465 5.21068 5.23373 5.30588 5.32166 5.35664 5.53280 5.62833 5.66770 5.68555 5.72989 5.84153 5.86934 5.98265 6.21078 6.38166 6.41539 6.68612 6.81781 6.89600 7.11045 7.28103 7.38055 7.45610 7.62736 7.79947 8.34623 8.45617 8.97659 9.67245 10.72091 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025465 B = 0.002259 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.282605 B =12393.133078 C =12954.257344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.078 3.922 4 H 0.068 0.932 5 C -0.144 4.144 6 C -0.121 4.121 7 C -0.133 4.133 8 C 0.143 3.857 9 H 0.105 0.895 10 N -0.734 5.734 11 C 0.511 3.489 12 O -0.517 6.517 13 C -0.080 4.080 14 C -0.167 4.167 15 C -0.056 4.056 16 C -0.228 4.228 17 C 0.159 3.841 18 O -0.203 6.203 19 C -0.471 4.471 20 H 0.084 0.916 21 C 0.009 3.991 22 N -0.883 5.883 23 Si 1.099 2.901 24 H -0.281 1.281 25 H -0.276 1.276 26 H -0.283 1.283 27 C -0.194 4.194 28 C -0.059 4.059 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.395 0.605 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.127 0.873 43 H 0.282 0.718 44 H 0.115 0.885 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.363 9.184 -18.984 29.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.019 3.981 4 H 0.086 0.914 5 C -0.182 4.182 6 C -0.159 4.159 7 C -0.172 4.172 8 C 0.038 3.962 9 H 0.123 0.877 10 N -0.388 5.388 11 C 0.298 3.702 12 O -0.391 6.391 13 C -0.120 4.120 14 C -0.169 4.169 15 C -0.075 4.075 16 C -0.247 4.247 17 C 0.106 3.894 18 O -0.108 6.108 19 C -0.547 4.547 20 H 0.101 0.899 21 C -0.197 4.197 22 N -0.515 5.515 23 Si 0.924 3.076 24 H -0.207 1.207 25 H -0.201 1.201 26 H -0.208 1.208 27 C -0.213 4.213 28 C -0.077 4.077 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.229 0.771 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.123 0.877 42 H 0.145 0.855 43 H 0.092 0.908 44 H 0.133 0.867 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.019 8.354 -18.243 26.968 hybrid contribution -2.204 0.513 -0.875 2.426 sum -20.223 8.866 -19.118 29.208 Atomic orbital electron populations 1.22802 0.81064 1.02942 0.99827 1.88005 1.19618 1.27158 1.94918 1.23074 0.94382 0.84956 0.95644 0.91436 1.22646 0.97461 1.01668 0.96427 1.22264 0.94779 1.02136 0.96682 1.22848 1.00673 0.99276 0.94414 1.21798 0.93698 1.00087 0.80605 0.87723 1.46105 1.29826 1.53980 1.08848 1.21033 0.81747 0.80077 0.87364 1.90747 1.31089 1.35699 1.81518 1.20412 0.99388 1.01605 0.90586 1.18648 0.95764 0.97716 1.04734 1.20517 0.92380 0.98129 0.96438 1.21113 1.00691 0.98545 1.04393 1.19237 0.87949 0.91693 0.90503 1.83661 1.24179 1.42048 1.60877 1.22236 0.97182 1.03307 1.31944 0.89882 1.26533 1.00851 0.99566 0.92701 1.70533 1.32395 1.09401 1.39201 0.83048 0.73984 0.74065 0.76551 1.20742 1.20078 1.20844 1.20135 0.92719 1.01727 1.06752 1.20393 0.97309 0.94327 0.95695 0.94012 0.94085 0.89536 0.91130 0.90426 0.91157 0.90967 0.90962 0.90254 0.77085 0.88998 0.88994 0.87737 0.85487 0.90784 0.86718 0.87317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.85 101.05 1.10 1.29 16 2 O -0.38 -3.68 10.27 -35.23 -0.36 -4.04 16 3 C 0.08 0.62 3.12 -25.50 -0.08 0.54 16 4 H 0.07 0.41 7.38 -51.93 -0.38 0.03 16 5 C -0.14 -0.96 6.62 -25.50 -0.17 -1.12 16 6 C -0.12 -0.88 6.83 -25.08 -0.17 -1.05 16 7 C -0.13 -1.21 6.58 -24.74 -0.16 -1.38 16 8 C 0.14 1.48 2.91 -66.27 -0.19 1.28 16 9 H 0.10 1.43 7.54 -51.93 -0.39 1.03 16 10 N -0.73 -7.37 5.17 -52.20 -0.27 -7.64 16 11 C 0.51 7.18 7.82 -10.98 -0.09 7.09 16 12 O -0.52 -9.95 15.71 5.56 0.09 -9.86 16 13 C -0.08 -1.01 5.83 -29.03 -0.17 -1.18 16 14 C -0.17 -2.99 4.38 -104.58 -0.46 -3.45 16 15 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 16 C -0.23 -5.29 9.17 -39.39 -0.36 -5.65 16 17 C 0.16 4.05 6.65 -39.10 -0.26 3.79 16 18 O -0.20 -5.96 9.16 0.07 0.00 -5.96 16 19 C -0.47 -13.68 9.49 30.89 0.29 -13.39 16 20 H 0.08 2.28 5.20 -52.48 -0.27 2.01 16 21 C 0.01 0.25 5.49 -17.52 -0.10 0.15 16 22 N -0.88 -27.01 13.70 55.48 0.76 -26.25 16 23 Si 1.10 24.37 29.92 -169.99 -5.09 19.28 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 27 C -0.19 -4.33 9.99 -39.40 -0.39 -4.72 16 28 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 29 H 0.04 0.22 8.10 -51.93 -0.42 -0.20 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.53 7.96 -51.93 -0.41 0.12 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.40 2.63 8.35 -40.82 -0.34 2.29 16 39 H 0.09 0.93 8.09 -51.93 -0.42 0.52 16 40 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 41 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.13 2.97 5.64 -52.49 -0.30 2.67 16 43 H 0.28 8.84 7.97 -40.82 -0.33 8.51 16 44 H 0.11 2.44 8.06 -52.48 -0.42 2.01 16 45 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -35.63 375.83 -7.89 -43.52 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.71 Total: 6.06 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -1.98 Total: -20.78 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.49 Total: -33.90 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.27 Total: -19.85 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.09 Total: 19.28 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.63 -7.89 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128321750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.027 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds