Wall clock time and date at job start Tue Mar 31 2020 12:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 116.99991 * 2 1 4 4 O 1.20827 * 120.00256 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99874 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47076 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47118 * 179.97438 * 6 5 3 8 8 C 1.50702 * 109.47159 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 H 1.09001 * 109.46948 * 35.00281 * 11 10 8 13 13 C 1.52999 * 109.47481 * 154.99940 * 11 10 8 14 14 C 1.50698 * 109.47141 * 295.00678 * 13 11 10 15 15 H 1.07994 * 120.00042 * 359.97438 * 14 13 11 16 16 C 1.37877 * 119.99710 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00499 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00045 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46718 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46965 * 120.00061 * 18 16 14 21 21 H 1.48496 * 109.46986 * 240.00332 * 18 16 14 22 22 C 1.50700 * 109.47514 * 275.00337 * 11 10 8 23 23 C 1.38235 * 119.99909 * 319.72923 * 22 11 10 24 24 C 1.38235 * 120.00203 * 179.78500 * 23 22 11 25 25 C 1.38243 * 119.99736 * 0.43880 * 24 23 22 26 26 C 1.38244 * 119.99802 * 359.81374 * 25 24 23 27 27 C 1.38234 * 120.00041 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47171 * 300.00532 * 1 2 3 29 29 H 1.09004 * 109.47318 * 59.99894 * 1 2 3 30 30 H 1.08999 * 109.47233 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47154 * 60.00022 * 5 3 2 32 32 H 1.09003 * 109.46515 * 299.99498 * 5 3 2 33 33 H 1.09004 * 109.47131 * 59.99662 * 6 5 3 34 34 H 1.09000 * 109.47504 * 299.99966 * 6 5 3 35 35 H 1.09004 * 109.47066 * 60.00025 * 7 6 5 36 36 H 1.08994 * 109.47405 * 299.99855 * 7 6 5 37 37 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 38 38 H 1.09006 * 109.46798 * 55.00299 * 13 11 10 39 39 H 1.08995 * 109.47322 * 174.99759 * 13 11 10 40 40 H 0.96993 * 120.00753 * 179.97438 * 17 16 14 41 41 H 1.08003 * 119.99755 * 359.97438 * 23 22 11 42 42 H 1.07999 * 120.00430 * 180.26737 * 24 23 22 43 43 H 1.07994 * 120.00105 * 179.82908 * 25 24 23 44 44 H 1.07997 * 119.99648 * 180.02562 * 26 25 24 45 45 H 1.07994 * 119.99956 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7419 -0.0011 7 6 5.5281 2.8220 -0.0011 8 6 5.9554 4.2672 -0.0022 9 8 5.1201 5.1465 -0.0025 10 7 7.2657 4.5824 0.0033 11 6 7.6812 5.9873 0.0082 12 1 6.9749 6.5729 0.5967 13 6 9.0773 6.1041 0.6232 14 6 9.0228 5.6993 2.0737 15 1 8.0860 5.3900 2.5132 16 6 10.1689 5.7238 2.8398 17 7 11.3096 6.1009 2.3048 18 14 10.1013 5.2226 4.6381 19 1 8.7103 4.8437 4.9943 20 1 11.0026 4.0642 4.8632 21 1 10.5373 6.3611 5.4859 22 6 7.7099 6.5077 -1.4057 23 6 8.1940 5.7104 -2.4260 24 6 8.2162 6.1861 -3.7237 25 6 7.7628 7.4626 -3.9998 26 6 7.2836 8.2618 -2.9787 27 6 7.2573 7.7844 -1.6817 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7805 0.8892 33 1 3.6107 3.2363 0.8889 34 1 3.6102 3.2359 -0.8910 35 1 5.9178 2.3275 -0.8909 36 1 5.9178 2.3283 0.8891 37 1 7.9338 3.8792 0.0038 38 1 9.7656 5.4493 0.0888 39 1 9.4230 7.1349 0.5463 40 1 12.1158 6.1185 2.8437 41 1 8.5520 4.7147 -2.2096 42 1 8.5904 5.5617 -4.5215 43 1 7.7827 7.8353 -5.0132 44 1 6.9290 9.2588 -3.1945 45 1 6.8825 8.4086 -0.8840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131517831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:41 Heat of formation + Delta-G solvation = -121.614712 kcal Electronic energy + Delta-G solvation = -26036.858088 eV Core-core repulsion = 22211.520186 eV Total energy + Delta-G solvation = -3825.337903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.64624 -39.63242 -38.44795 -36.82159 -35.31481 -34.26203 -32.73791 -31.22898 -30.46078 -29.46125 -28.70525 -27.36772 -24.95297 -23.06536 -22.27908 -21.93407 -20.75963 -20.09497 -19.64713 -17.78889 -17.10943 -16.92551 -16.76151 -16.18520 -16.11974 -15.60694 -15.33663 -14.80622 -14.53371 -14.13114 -14.10417 -13.68290 -13.28671 -13.20041 -12.99447 -12.72915 -12.53169 -12.39802 -12.20453 -12.11067 -11.94488 -11.54145 -11.45899 -11.13666 -11.06312 -10.92666 -10.80573 -10.74179 -10.66500 -10.58792 -10.45594 -9.78469 -9.37779 -9.24511 -8.54058 -8.46763 -8.39133 -8.17001 -6.10331 -4.13789 1.79163 1.81366 2.03297 2.48494 3.15909 3.25019 3.33899 3.37956 3.76860 4.25016 4.38848 4.49767 4.81687 4.82601 4.83097 4.91809 5.03618 5.23362 5.26366 5.27142 5.28280 5.32546 5.36130 5.39138 5.49592 5.56548 5.69853 5.91858 5.95267 6.06645 6.15187 6.19655 6.33756 6.37148 6.45301 6.59443 6.85447 6.86568 6.94474 7.12511 7.41670 7.49104 7.55961 7.62868 7.86650 8.15830 8.25540 8.81015 8.92587 9.51399 11.00241 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008541 B = 0.003503 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.444981 B = 7992.338120 C =10675.781576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.458 3.542 4 O -0.502 6.502 5 C -0.113 4.113 6 C -0.093 4.093 7 C -0.141 4.141 8 C 0.508 3.492 9 O -0.548 6.548 10 N -0.702 5.702 11 C 0.184 3.816 12 H 0.086 0.914 13 C 0.023 3.977 14 C -0.519 4.519 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.071 4.071 23 C -0.108 4.108 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.123 4.123 27 C -0.108 4.108 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.401 0.599 38 H 0.024 0.976 39 H 0.033 0.967 40 H 0.261 0.739 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.428 -10.720 -9.218 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.301 3.699 4 O -0.388 6.388 5 C -0.151 4.151 6 C -0.131 4.131 7 C -0.181 4.181 8 C 0.294 3.706 9 O -0.427 6.427 10 N -0.351 5.351 11 C 0.079 3.921 12 H 0.104 0.896 13 C -0.014 4.014 14 C -0.557 4.557 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.072 4.072 23 C -0.127 4.127 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.127 4.127 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.235 0.765 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.066 -9.756 -9.159 18.702 hybrid contribution 0.310 -0.535 1.002 1.178 sum -12.755 -10.291 -8.157 18.307 Atomic orbital electron populations 1.23247 0.76497 1.03536 1.02609 1.86508 1.23385 1.33833 1.84363 1.23937 0.92450 0.81205 0.72352 1.90712 1.67245 1.36279 1.44597 1.21472 0.87083 1.00578 1.05964 1.21151 0.93883 0.92711 1.05373 1.21638 0.96864 0.95147 1.04490 1.20470 0.82911 0.90917 0.76292 1.90683 1.51544 1.50263 1.50164 1.45986 1.06525 1.09096 1.73461 1.20226 1.00663 0.80946 0.90229 0.89599 1.19393 0.87917 0.98586 0.95487 1.21176 0.94674 1.45030 0.94859 0.92314 1.24996 0.95490 0.95258 0.98450 1.69965 0.99274 1.47556 1.36301 0.86544 0.78093 0.78229 0.85207 1.19714 1.21030 1.20994 1.20565 0.95821 0.94176 0.96615 1.20902 0.99547 0.99807 0.92401 1.21042 1.00737 0.96063 0.96526 1.20997 1.00911 0.94788 0.98667 1.21047 1.00468 0.99475 0.93101 1.21027 0.99389 0.95724 0.96546 0.91897 0.91935 0.88202 0.87530 0.87416 0.90154 0.90288 0.89019 0.88615 0.76491 0.95744 0.94835 0.92919 0.86549 0.86753 0.86861 0.86622 0.86205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.58 10.56 -39.24 -0.41 -3.99 16 3 C 0.46 5.18 7.96 36.01 0.29 5.46 16 4 O -0.50 -7.47 15.73 -18.75 -0.29 -7.77 16 5 C -0.11 -0.99 5.81 -27.88 -0.16 -1.15 16 6 C -0.09 -1.12 3.79 -26.74 -0.10 -1.22 16 7 C -0.14 -1.63 5.70 -27.88 -0.16 -1.79 16 8 C 0.51 8.59 7.79 -10.98 -0.09 8.50 16 9 O -0.55 -11.47 15.64 5.55 0.09 -11.38 16 10 N -0.70 -12.18 4.04 -54.93 -0.22 -12.40 16 11 C 0.18 3.71 2.11 -69.08 -0.15 3.57 16 12 H 0.09 1.93 7.44 -51.93 -0.39 1.54 16 13 C 0.02 0.56 4.49 -27.88 -0.13 0.43 16 14 C -0.52 -13.59 8.84 -34.44 -0.30 -13.89 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 18 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.07 -1.31 4.91 -104.62 -0.51 -1.83 16 23 C -0.11 -1.80 9.32 -39.58 -0.37 -2.17 16 24 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 25 C -0.14 -1.95 10.05 -39.58 -0.40 -2.34 16 26 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 27 C -0.11 -1.91 9.67 -39.58 -0.38 -2.30 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.15 8.06 -51.93 -0.42 0.73 16 34 H 0.08 1.09 8.06 -51.93 -0.42 0.68 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.40 6.22 8.60 -40.82 -0.35 5.87 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.12 1.78 7.73 -52.48 -0.41 1.37 16 42 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 44 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.12 2.04 8.04 -52.49 -0.42 1.62 16 LS Contribution 388.08 15.07 5.85 5.85 Total: -1.00 -33.95 388.08 -8.58 -42.53 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.02 Total: 6.46 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -2.29 Total: -10.42 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.51 Total: -37.07 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.62 Total: -23.14 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.95 -8.58 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131517831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.085 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds