Wall clock time and date at job start Tue Mar 31 2020 12:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34709 * 116.99971 * 2 1 4 4 O 1.21471 * 120.00215 * 0.02562 * 3 2 1 5 5 C 1.47723 * 120.00179 * 179.97438 * 3 2 1 6 6 C 1.39633 * 120.15316 * 179.97438 * 5 3 2 7 7 C 1.37938 * 119.84852 * 180.30600 * 6 5 3 8 8 C 1.38372 * 120.14963 * 359.44003 * 7 6 5 9 9 C 1.50708 * 119.84796 * 180.28044 * 8 7 6 10 10 C 1.52998 * 109.47208 * 270.27845 * 9 8 7 11 11 C 1.50694 * 109.46822 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00246 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00153 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00302 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46970 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47026 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47122 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00156 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00231 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99689 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00298 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46967 * 90.00333 * 21 19 17 23 23 H 1.48501 * 109.47332 * 210.00091 * 21 19 17 24 24 H 1.48500 * 109.47220 * 330.00622 * 21 19 17 25 25 C 1.38363 * 120.30454 * 0.56443 * 8 7 6 26 26 C 1.37948 * 120.14806 * 359.71588 * 25 8 7 27 27 H 1.09004 * 109.47185 * 60.00164 * 1 2 3 28 28 H 1.09003 * 109.47461 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47492 * 299.99973 * 1 2 3 30 30 H 1.08002 * 120.07109 * 0.02562 * 6 5 3 31 31 H 1.07998 * 119.92553 * 179.70097 * 7 6 5 32 32 H 1.09000 * 109.46665 * 30.28514 * 9 8 7 33 33 H 1.08996 * 109.46685 * 150.27641 * 9 8 7 34 34 H 1.09002 * 109.47124 * 300.00037 * 10 9 8 35 35 H 1.09000 * 109.46774 * 60.00463 * 10 9 8 36 36 H 0.96999 * 119.99492 * 359.97438 * 13 11 10 37 37 H 1.08995 * 109.46882 * 300.00133 * 14 13 11 38 38 H 1.09000 * 109.46978 * 60.00616 * 14 13 11 39 39 H 1.09002 * 109.47124 * 300.00056 * 15 14 13 40 40 H 1.09005 * 109.47210 * 60.00316 * 15 14 13 41 41 H 1.08995 * 109.46951 * 300.00200 * 16 15 14 42 42 H 1.09000 * 109.46853 * 60.00649 * 16 15 14 43 43 H 0.96993 * 119.99644 * 179.97438 * 20 19 17 44 44 H 1.07997 * 119.93022 * 179.74159 * 25 8 7 45 45 H 1.08004 * 120.07515 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5387 1.2776 0.0006 6 6 4.1759 2.5201 0.0000 7 6 5.5538 2.5850 -0.0058 8 6 6.3043 1.4226 0.0005 9 6 7.8093 1.5015 0.0005 10 6 8.3186 1.5275 -1.4420 11 6 9.8235 1.6070 -1.4420 12 8 10.4290 1.6392 -0.3916 13 7 10.4966 1.6413 -2.6091 14 6 11.9595 1.7181 -2.6091 15 6 12.4688 1.7442 -4.0516 16 6 13.9967 1.8250 -4.0516 17 6 14.4984 1.8502 -5.4724 18 1 13.7977 1.8119 -6.2934 19 6 15.8521 1.9220 -5.7244 20 7 16.7055 1.9681 -4.7248 21 14 16.4740 1.9525 -7.4856 22 1 16.5643 3.3587 -7.9544 23 1 17.8176 1.3230 -7.5470 24 1 15.5346 1.2000 -8.3554 25 6 5.6795 0.1881 0.0010 26 6 4.3023 0.1086 0.0011 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.5912 3.4282 -0.0004 31 1 6.0479 3.5453 -0.0111 32 1 8.1255 2.4094 0.5140 33 1 8.2187 0.6320 0.5148 34 1 8.0024 0.6195 -1.9554 35 1 7.9092 2.3971 -1.9562 36 1 10.0123 1.6145 -3.4491 37 1 12.2757 2.6263 -2.0960 38 1 12.3690 0.8487 -2.0946 39 1 12.1526 0.8362 -4.5651 40 1 12.0594 2.6138 -4.5658 41 1 14.3125 2.7332 -3.5383 42 1 14.4065 0.9557 -3.5374 43 1 17.6578 2.0183 -4.9020 44 1 6.2712 -0.7154 0.0018 45 1 3.8158 -0.8557 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171793971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:06 Heat of formation + Delta-G solvation = -126.565379 kcal Electronic energy + Delta-G solvation = -24345.173086 eV Core-core repulsion = 20519.620507 eV Total energy + Delta-G solvation = -3825.552580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00097 -39.85011 -39.16389 -36.87870 -35.54720 -34.35833 -33.33537 -31.51658 -31.40493 -30.48822 -28.24202 -26.95431 -25.35168 -23.28232 -23.12595 -22.35068 -20.96668 -20.73585 -19.82664 -18.49272 -17.56600 -17.07072 -16.79496 -16.46987 -16.05147 -15.50847 -15.46193 -15.30798 -15.06362 -14.47529 -14.38451 -14.01708 -13.97166 -13.81678 -13.52565 -13.09619 -13.06342 -12.59930 -12.31741 -12.21442 -11.86833 -11.80251 -11.77919 -11.61116 -11.28104 -11.18488 -10.96181 -10.92107 -10.76021 -10.61631 -9.94695 -9.89538 -9.45270 -9.44700 -9.22990 -9.11884 -8.81495 -8.39192 -6.03839 -4.07102 0.22858 0.92479 2.08623 2.21870 2.73575 3.24516 3.29350 3.35843 3.38245 3.43603 4.19215 4.35073 4.42134 4.44460 4.51673 4.63566 4.71420 4.72246 4.78586 4.92455 5.01240 5.02233 5.06147 5.30588 5.32010 5.39282 5.49611 5.62171 5.70022 5.74381 5.74887 5.82390 5.86662 5.97021 6.13134 6.16345 6.40035 6.45598 6.56721 6.79916 6.97525 7.27675 7.61042 7.66828 7.73424 7.94715 8.33440 8.37318 8.99564 9.57280 11.07429 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.030943 B = 0.001494 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.674181 B =18740.120935 C =19144.462110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.510 3.490 4 O -0.508 6.508 5 C -0.137 4.137 6 C -0.051 4.051 7 C -0.128 4.128 8 C -0.040 4.040 9 C -0.073 4.073 10 C -0.136 4.136 11 C 0.506 3.494 12 O -0.546 6.546 13 N -0.727 5.727 14 C 0.116 3.884 15 C -0.121 4.121 16 C 0.023 3.977 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.130 4.130 26 C -0.058 4.058 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.399 0.601 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 44 H 0.134 0.866 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.332 -4.013 10.175 33.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.355 3.645 4 O -0.397 6.397 5 C -0.138 4.138 6 C -0.069 4.069 7 C -0.146 4.146 8 C -0.040 4.040 9 C -0.110 4.110 10 C -0.176 4.176 11 C 0.292 3.708 12 O -0.424 6.424 13 N -0.377 5.377 14 C -0.007 4.007 15 C -0.159 4.159 16 C -0.014 4.014 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.148 4.148 26 C -0.076 4.076 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.232 0.768 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.152 0.848 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -30.918 -3.698 10.969 33.014 hybrid contribution -0.031 0.071 -1.436 1.438 sum -30.949 -3.627 9.533 32.586 Atomic orbital electron populations 1.23304 0.75775 1.03907 1.02728 1.86540 1.23722 1.32651 1.84303 1.21277 0.89234 0.81436 0.72561 1.90838 1.66854 1.36046 1.45953 1.19071 0.88768 0.95213 1.10771 1.21265 0.94612 0.96675 0.94328 1.21092 0.93015 0.98786 1.01694 1.20312 0.96229 0.93127 0.94314 1.20460 0.89167 1.05265 0.96123 1.21644 0.92673 1.04766 0.98480 1.20586 0.89778 0.76420 0.84033 1.90710 1.70472 1.49867 1.31318 1.46246 1.08839 1.74434 1.08221 1.21648 0.77436 1.01905 0.99726 1.21892 1.00859 1.00865 0.92291 1.19033 0.87417 0.97631 0.97348 1.21206 0.91807 1.50850 0.92312 0.92648 1.25029 0.97064 0.95243 0.97090 1.69967 1.02238 1.50371 1.30670 0.86580 0.78206 0.78164 0.84952 1.20651 1.21184 1.19902 1.21132 0.94172 0.97847 1.01634 1.21462 0.93838 0.97881 0.94461 0.91722 0.87836 0.91757 0.84496 0.84701 0.89539 0.89527 0.88704 0.88719 0.76764 0.91788 0.91783 0.92728 0.92734 0.96275 0.96271 0.92915 0.84809 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.82 9.82 -40.52 -0.40 -3.22 16 3 C 0.51 4.88 7.90 34.61 0.27 5.16 16 4 O -0.51 -6.04 16.14 -19.24 -0.31 -6.35 16 5 C -0.14 -1.17 5.87 -104.98 -0.62 -1.79 16 6 C -0.05 -0.41 9.60 -39.17 -0.38 -0.78 16 7 C -0.13 -0.93 9.68 -39.64 -0.38 -1.31 16 8 C -0.04 -0.29 5.14 -104.52 -0.54 -0.83 16 9 C -0.07 -0.60 4.62 -27.88 -0.13 -0.73 16 10 C -0.14 -1.13 5.68 -27.89 -0.16 -1.29 16 11 C 0.51 6.62 7.83 -10.99 -0.09 6.53 16 12 O -0.55 -9.43 15.98 5.56 0.09 -9.34 16 13 N -0.73 -9.59 5.56 -60.30 -0.33 -9.93 16 14 C 0.12 1.96 5.67 -4.04 -0.02 1.94 16 15 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 18 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 21 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.13 -0.89 9.68 -39.64 -0.38 -1.27 16 26 C -0.06 -0.41 9.62 -39.17 -0.38 -0.79 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.14 1.05 7.65 -52.49 -0.40 0.65 16 31 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.09 0.78 8.04 -51.93 -0.42 0.36 16 33 H 0.09 0.77 8.04 -51.93 -0.42 0.35 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.40 4.11 8.47 -40.82 -0.35 3.77 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 45 H 0.14 0.77 7.61 -52.48 -0.40 0.37 16 LS Contribution 389.84 15.07 5.87 5.87 Total: -1.00 -34.43 389.84 -8.80 -43.24 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.02 Total: -1.49 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -2.42 Total: -9.19 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.40 Total: -35.81 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.62 Total: -18.91 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.43 -8.80 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171793971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.328 kcal (2) G-P(sol) polarization free energy of solvation -34.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds