Wall clock time and date at job start Tue Mar 31 2020 12:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34709 * 116.99971 * 2 1 4 4 O 1.21471 * 120.00215 * 0.02562 * 3 2 1 5 5 C 1.47723 * 120.00179 * 179.97438 * 3 2 1 6 6 C 1.39633 * 120.15316 * 179.97438 * 5 3 2 7 7 C 1.37938 * 119.84852 * 180.30600 * 6 5 3 8 8 C 1.38372 * 120.14963 * 359.44003 * 7 6 5 9 9 C 1.50708 * 119.84796 * 180.28044 * 8 7 6 10 10 C 1.52998 * 109.47208 * 270.27845 * 9 8 7 11 11 C 1.50694 * 109.46822 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00246 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00153 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00302 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46970 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47026 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47122 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00156 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00231 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99689 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00298 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46967 * 90.00333 * 21 19 17 23 23 H 1.48501 * 109.47332 * 210.00091 * 21 19 17 24 24 H 1.48500 * 109.47220 * 330.00622 * 21 19 17 25 25 C 1.38363 * 120.30454 * 0.56443 * 8 7 6 26 26 C 1.37948 * 120.14806 * 359.71588 * 25 8 7 27 27 H 1.09004 * 109.47185 * 60.00164 * 1 2 3 28 28 H 1.09003 * 109.47461 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47492 * 299.99973 * 1 2 3 30 30 H 1.08002 * 120.07109 * 0.02562 * 6 5 3 31 31 H 1.07998 * 119.92553 * 179.70097 * 7 6 5 32 32 H 1.09000 * 109.46665 * 30.28514 * 9 8 7 33 33 H 1.08996 * 109.46685 * 150.27641 * 9 8 7 34 34 H 1.09002 * 109.47124 * 300.00037 * 10 9 8 35 35 H 1.09000 * 109.46774 * 60.00463 * 10 9 8 36 36 H 0.96999 * 119.99492 * 359.97438 * 13 11 10 37 37 H 1.08995 * 109.46882 * 300.00133 * 14 13 11 38 38 H 1.09000 * 109.46978 * 60.00616 * 14 13 11 39 39 H 1.09002 * 109.47124 * 300.00056 * 15 14 13 40 40 H 1.09005 * 109.47210 * 60.00316 * 15 14 13 41 41 H 1.08995 * 109.46951 * 300.00200 * 16 15 14 42 42 H 1.09000 * 109.46853 * 60.00649 * 16 15 14 43 43 H 0.96993 * 119.99644 * 179.97438 * 20 19 17 44 44 H 1.07997 * 119.93022 * 179.74159 * 25 8 7 45 45 H 1.08004 * 120.07515 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5387 1.2776 0.0006 6 6 4.1759 2.5201 0.0000 7 6 5.5538 2.5850 -0.0058 8 6 6.3043 1.4226 0.0005 9 6 7.8093 1.5015 0.0005 10 6 8.3186 1.5275 -1.4420 11 6 9.8235 1.6070 -1.4420 12 8 10.4290 1.6392 -0.3916 13 7 10.4966 1.6413 -2.6091 14 6 11.9595 1.7181 -2.6091 15 6 12.4688 1.7442 -4.0516 16 6 13.9967 1.8250 -4.0516 17 6 14.4984 1.8502 -5.4724 18 1 13.7977 1.8119 -6.2934 19 6 15.8521 1.9220 -5.7244 20 7 16.7055 1.9681 -4.7248 21 14 16.4740 1.9525 -7.4856 22 1 16.5643 3.3587 -7.9544 23 1 17.8176 1.3230 -7.5470 24 1 15.5346 1.2000 -8.3554 25 6 5.6795 0.1881 0.0010 26 6 4.3023 0.1086 0.0011 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.5912 3.4282 -0.0004 31 1 6.0479 3.5453 -0.0111 32 1 8.1255 2.4094 0.5140 33 1 8.2187 0.6320 0.5148 34 1 8.0024 0.6195 -1.9554 35 1 7.9092 2.3971 -1.9562 36 1 10.0123 1.6145 -3.4491 37 1 12.2757 2.6263 -2.0960 38 1 12.3690 0.8487 -2.0946 39 1 12.1526 0.8362 -4.5651 40 1 12.0594 2.6138 -4.5658 41 1 14.3125 2.7332 -3.5383 42 1 14.4065 0.9557 -3.5374 43 1 17.6578 2.0183 -4.9020 44 1 6.2712 -0.7154 0.0018 45 1 3.8158 -0.8557 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171793971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:05 Heat of formation + Delta-G solvation = -146.995039 kcal Electronic energy + Delta-G solvation = -24346.058983 eV Core-core repulsion = 20519.620507 eV Total energy + Delta-G solvation = -3826.438476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65109 -40.80803 -39.89778 -37.55572 -36.98873 -35.17862 -35.08006 -33.05654 -32.03690 -31.31639 -28.97726 -28.34911 -26.32741 -24.74518 -23.68670 -23.23457 -22.28704 -21.60965 -20.99555 -19.09950 -18.54860 -18.23529 -17.97977 -17.42230 -16.96166 -16.80796 -16.40283 -16.22651 -16.15983 -15.63549 -15.51034 -14.85964 -14.55246 -14.49883 -14.31341 -14.16765 -14.06105 -13.83146 -13.71540 -13.37095 -13.05199 -12.83123 -12.73912 -12.53764 -12.49576 -12.35348 -12.24387 -11.85465 -11.79738 -11.66019 -11.65642 -11.57620 -11.23321 -10.81553 -10.54873 -10.04562 -9.98827 -9.85121 -8.19089 -6.30643 -0.38594 0.38909 1.42311 1.42631 1.43581 1.54576 1.66384 1.70615 2.27651 2.43706 2.75973 3.14825 3.56751 3.73371 3.83879 3.98483 4.01681 4.16632 4.18493 4.24091 4.28565 4.31660 4.35311 4.40213 4.47574 4.57123 4.68378 4.70687 4.82611 4.91572 4.96793 5.04069 5.08890 5.15566 5.18251 5.22562 5.28189 5.38165 5.47997 5.55480 5.59634 5.71637 5.84891 5.86080 6.22806 6.61352 6.64450 6.87212 7.33235 7.39236 8.92959 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.030943 B = 0.001494 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.674181 B =18740.120935 C =19144.462110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.509 3.491 4 O -0.540 6.540 5 C -0.152 4.152 6 C -0.060 4.060 7 C -0.128 4.128 8 C -0.039 4.039 9 C -0.068 4.068 10 C -0.123 4.123 11 C 0.504 3.496 12 O -0.592 6.592 13 N -0.718 5.718 14 C 0.129 3.871 15 C -0.102 4.102 16 C 0.022 3.978 17 C -0.542 4.542 18 H 0.067 0.933 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.260 1.260 25 C -0.128 4.128 26 C -0.055 4.055 27 H 0.062 0.938 28 H 0.135 0.865 29 H 0.062 0.938 30 H 0.134 0.866 31 H 0.148 0.852 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.416 0.584 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.067 0.933 41 H -0.009 1.009 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.153 0.847 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.992 -4.889 8.575 34.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.356 3.644 4 O -0.432 6.432 5 C -0.153 4.153 6 C -0.078 4.078 7 C -0.146 4.146 8 C -0.039 4.039 9 C -0.105 4.105 10 C -0.163 4.163 11 C 0.292 3.708 12 O -0.473 6.473 13 N -0.370 5.370 14 C 0.004 3.996 15 C -0.140 4.140 16 C -0.016 4.016 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.791 3.209 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.184 1.184 25 C -0.146 4.146 26 C -0.073 4.073 27 H 0.081 0.919 28 H 0.153 0.847 29 H 0.081 0.919 30 H 0.152 0.848 31 H 0.166 0.834 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.253 0.747 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.072 0.928 44 H 0.170 0.830 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -32.625 -4.591 9.342 34.245 hybrid contribution 0.455 0.313 -0.876 1.036 sum -32.170 -4.278 8.466 33.539 Atomic orbital electron populations 1.23591 0.74295 1.05943 1.02600 1.86533 1.25231 1.31742 1.83794 1.21539 0.89720 0.81427 0.71721 1.90816 1.67596 1.37067 1.47720 1.19200 0.88412 0.96009 1.11704 1.21332 0.95029 0.96641 0.94773 1.21228 0.92658 0.99484 1.01207 1.20248 0.95535 0.93488 0.94633 1.20367 0.89660 1.04518 0.96001 1.21656 0.88421 1.07113 0.99065 1.21442 0.91683 0.74748 0.82894 1.90698 1.71848 1.51817 1.32948 1.46046 1.07053 1.74323 1.09547 1.21190 0.80046 1.00412 0.97902 1.21596 0.96470 1.02099 0.93835 1.18958 0.91723 0.95008 0.95872 1.21698 0.92410 1.50301 0.93578 0.91513 1.26017 0.97465 0.94770 1.01778 1.70114 1.02592 1.51555 1.33266 0.85422 0.77600 0.78522 0.79336 1.19864 1.21068 1.18403 1.21347 0.94163 0.98323 1.00759 1.21621 0.93939 0.98005 0.93707 0.91893 0.84726 0.91926 0.84767 0.83442 0.90561 0.90222 0.86059 0.86355 0.74659 0.93491 0.93400 0.91328 0.91390 0.99044 0.98990 0.92841 0.82974 0.82924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.36 -5.28 9.82 -56.19 -0.55 -5.83 16 3 C 0.51 9.55 7.90 70.33 0.56 10.11 16 4 O -0.54 -13.02 16.14 19.93 0.32 -12.69 16 5 C -0.15 -2.44 5.87 -20.10 -0.12 -2.56 16 6 C -0.06 -0.91 9.60 22.54 0.22 -0.69 16 7 C -0.13 -1.65 9.68 22.23 0.22 -1.44 16 8 C -0.04 -0.49 5.14 -19.80 -0.10 -0.59 16 9 C -0.07 -0.99 4.62 29.85 0.14 -0.85 16 10 C -0.12 -1.68 5.68 29.85 0.17 -1.51 16 11 C 0.50 12.38 7.83 87.66 0.69 13.06 16 12 O -0.59 -20.36 15.98 -3.03 -0.05 -20.41 16 13 N -0.72 -17.64 5.56 -463.07 -2.57 -20.21 16 14 C 0.13 4.36 5.67 86.38 0.49 4.85 16 15 C -0.10 -3.81 5.27 30.60 0.16 -3.65 16 16 C 0.02 1.14 4.97 29.85 0.15 1.28 16 17 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 18 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 19 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 20 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 21 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 25 C -0.13 -1.42 9.68 22.23 0.22 -1.21 16 26 C -0.05 -0.67 9.62 22.54 0.22 -0.45 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.13 2.06 7.65 -2.91 -0.02 2.04 16 31 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 32 H 0.08 1.29 8.04 -2.39 -0.02 1.27 16 33 H 0.08 1.29 8.04 -2.39 -0.02 1.27 16 34 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.42 7.30 8.47 -92.71 -0.79 6.52 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 41 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 44 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 45 H 0.15 1.34 7.61 -2.91 -0.02 1.31 16 Total: -1.00 -76.27 389.84 4.54 -71.73 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.20 Total: 10.10 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 4.89 Total: -11.58 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -2.29 Total: -76.71 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.28 Total: -38.93 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -76.27 4.54 -71.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171793971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.265 kcal (2) G-P(sol) polarization free energy of solvation -76.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds