Wall clock time and date at job start Tue Mar 31 2020 12:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34226 * 117.00283 * 2 1 4 4 O 1.20831 * 119.99854 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00144 * 180.27297 * 3 2 1 6 6 H 1.09002 * 109.50057 * 59.72572 * 5 3 2 7 7 C 1.53108 * 109.50222 * 299.64649 * 5 3 2 8 8 C 1.53122 * 109.15800 * 182.44307 * 7 5 3 9 9 C 1.53032 * 109.31141 * 57.59591 * 8 7 5 10 10 N 1.46851 * 109.52187 * 300.84252 * 9 8 7 11 11 C 1.46898 * 110.99956 * 185.84000 * 10 9 8 12 12 C 1.50702 * 109.47424 * 65.78918 * 11 10 9 13 13 C 1.38302 * 119.93128 * 269.72668 * 12 11 10 14 14 C 1.38101 * 120.06745 * 179.72416 * 13 12 11 15 15 C 1.38875 * 119.93070 * 0.54707 * 14 13 12 16 16 O 1.35753 * 120.06779 * 179.75057 * 15 14 13 17 17 C 1.34835 * 116.99774 * 174.44518 * 16 15 14 18 18 H 1.07993 * 120.00089 * 5.04764 * 17 16 15 19 19 C 1.38652 * 119.99477 * 185.05585 * 17 16 15 20 20 N 1.31554 * 120.00419 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99706 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46975 * 59.99412 * 21 19 17 23 23 H 1.48498 * 109.46972 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47004 * 299.99675 * 21 19 17 25 25 C 1.38885 * 119.86389 * 359.72698 * 15 14 13 26 26 C 1.38100 * 119.92965 * 0.02562 * 25 15 14 27 27 C 1.46844 * 111.20075 * 61.74239 * 10 9 8 28 28 H 1.09000 * 109.47054 * 60.00261 * 1 2 3 29 29 H 1.08994 * 109.47485 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47371 * 300.00584 * 1 2 3 31 31 H 1.09001 * 109.52586 * 302.30931 * 7 5 3 32 32 H 1.08997 * 109.52812 * 62.50045 * 7 5 3 33 33 H 1.09000 * 109.47158 * 297.65568 * 8 7 5 34 34 H 1.09005 * 109.53578 * 177.57229 * 8 7 5 35 35 H 1.09001 * 109.46609 * 180.82810 * 9 8 7 36 36 H 1.08999 * 109.46920 * 60.85595 * 9 8 7 37 37 H 1.09003 * 109.47164 * 185.78553 * 11 10 9 38 38 H 1.08998 * 109.47250 * 305.78755 * 11 10 9 39 39 H 1.08000 * 119.96396 * 359.97438 * 13 12 11 40 40 H 1.07996 * 120.03331 * 180.27020 * 14 13 12 41 41 H 0.96997 * 120.00216 * 179.97438 * 20 19 17 42 42 H 1.07993 * 120.03475 * 179.97438 * 25 15 14 43 43 H 1.08001 * 119.96659 * 180.02562 * 26 25 15 44 44 H 1.08991 * 109.46360 * 178.24354 * 27 10 9 45 45 H 1.08999 * 109.45298 * 58.26631 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0062 6 1 3.9530 0.7784 -0.8963 7 6 4.1195 0.5859 1.2443 8 6 5.6444 0.7237 1.2610 9 6 6.0189 2.2069 1.2206 10 7 5.4674 2.8195 0.0053 11 6 5.9228 4.2088 -0.1372 12 6 7.4125 4.2285 -0.3637 13 6 8.2736 4.3059 0.7158 14 6 9.6394 4.3184 0.5119 15 6 10.1478 4.2646 -0.7793 16 8 11.4898 4.2818 -0.9833 17 6 11.9187 4.1111 -2.2501 18 1 11.2049 4.0508 -3.0583 19 6 13.2761 4.0129 -2.5151 20 7 14.1456 4.0868 -1.5306 21 14 13.8703 3.7757 -4.2702 22 1 13.4240 4.9214 -5.1030 23 1 15.3533 3.7016 -4.2849 24 1 13.3058 2.5160 -4.8179 25 6 9.2804 4.1926 -1.8616 26 6 7.9156 4.1753 -1.6509 27 6 4.0011 2.7421 -0.0099 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.7020 1.0566 2.1343 32 1 3.8488 -0.4698 1.2285 33 1 6.0644 0.2186 0.3912 34 1 6.0412 0.2728 2.1706 35 1 7.1043 2.3076 1.2176 36 1 5.6103 2.7088 2.0977 37 1 5.4200 4.6706 -0.9871 38 1 5.6859 4.7637 0.7705 39 1 7.8776 4.3526 1.7195 40 1 10.3114 4.3745 1.3555 41 1 15.0951 4.0177 -1.7160 42 1 9.6726 4.1511 -2.8669 43 1 7.2406 4.1189 -2.4920 44 1 3.6209 3.2313 -0.9066 45 1 3.6021 3.2413 0.8731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264542059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:57 Heat of formation + Delta-G solvation = -108.409315 kcal Electronic energy + Delta-G solvation = -26249.830294 eV Core-core repulsion = 22425.065020 eV Total energy + Delta-G solvation = -3824.765274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79250 -40.85134 -39.77810 -38.18856 -37.48943 -34.97360 -34.16811 -32.26078 -31.73667 -31.07467 -28.65780 -27.68910 -26.51543 -25.18195 -23.91102 -23.56653 -22.34093 -21.56618 -20.68458 -19.80111 -18.81959 -18.62698 -17.81616 -17.42716 -16.58864 -16.50075 -16.38895 -16.13427 -15.63277 -15.45070 -15.19807 -15.11792 -14.96265 -14.58264 -14.38088 -14.30735 -14.01821 -13.86372 -13.60521 -13.49630 -13.07975 -12.92548 -12.72003 -12.47063 -12.37850 -12.33772 -12.13298 -12.10712 -11.91444 -11.80894 -11.66299 -11.38768 -11.23524 -11.14044 -10.76206 -9.72439 -9.29013 -8.85981 -8.44895 -6.12770 0.63452 0.70367 1.10653 1.36236 1.46668 1.52318 1.67596 2.19603 2.76580 3.04980 3.32606 3.52664 3.55010 3.72930 3.86000 3.99273 4.09633 4.16146 4.22694 4.26225 4.31455 4.32875 4.34352 4.46361 4.59893 4.62461 4.65174 4.69852 4.74305 4.76881 4.84390 4.90168 4.99624 5.08255 5.11534 5.18044 5.22674 5.33102 5.34330 5.40981 5.59843 5.75192 5.84368 6.05405 6.08467 6.17344 6.27093 6.67143 6.99912 7.81250 8.78049 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024807 B = 0.002305 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.447349 B =12144.452734 C =12410.109026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.472 3.528 4 O -0.538 6.538 5 C -0.074 4.074 6 H 0.125 0.875 7 C -0.103 4.103 8 C -0.111 4.111 9 C 0.044 3.956 10 N -0.539 5.539 11 C 0.116 3.884 12 C -0.151 4.151 13 C -0.057 4.057 14 C -0.204 4.204 15 C 0.114 3.886 16 O -0.233 6.233 17 C -0.412 4.412 18 H 0.101 0.899 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.258 1.258 25 C -0.243 4.243 26 C -0.049 4.049 27 C 0.077 3.923 28 H 0.061 0.939 29 H 0.131 0.869 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.142 0.858 40 H 0.112 0.888 41 H 0.272 0.728 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.080 0.920 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.705 -8.531 3.844 27.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.093 4.093 6 H 0.143 0.857 7 C -0.141 4.141 8 C -0.149 4.149 9 C -0.083 4.083 10 N -0.263 5.263 11 C -0.010 4.010 12 C -0.152 4.152 13 C -0.076 4.076 14 C -0.223 4.223 15 C 0.064 3.936 16 O -0.140 6.140 17 C -0.488 4.488 18 H 0.118 0.882 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.837 3.163 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.182 1.182 25 C -0.262 4.262 26 C -0.067 4.067 27 C -0.051 4.051 28 H 0.079 0.921 29 H 0.149 0.851 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.160 0.840 40 H 0.130 0.870 41 H 0.081 0.919 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.098 0.902 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -25.377 -8.483 3.642 27.004 hybrid contribution 0.299 0.661 -0.028 0.726 sum -25.078 -7.822 3.614 26.517 Atomic orbital electron populations 1.23550 0.74858 1.05716 1.02475 1.86506 1.24896 1.32667 1.83520 1.23956 0.92259 0.81177 0.70968 1.90661 1.67961 1.37345 1.46779 1.21074 0.85654 0.98835 1.03762 0.85674 1.21539 0.95960 1.01674 0.94879 1.21562 0.94797 0.95140 1.03398 1.22270 1.00467 0.95561 0.90027 1.61842 1.07626 1.17826 1.39043 1.20778 0.90411 0.88259 1.01582 1.19491 0.95244 1.07897 0.92540 1.20829 0.90695 0.96795 0.99241 1.20406 0.96436 1.11775 0.93674 1.19940 0.84170 0.94300 0.95213 1.83941 1.18131 1.80786 1.31122 1.21760 0.92771 1.51994 0.82294 0.88193 1.26577 0.94573 0.96080 1.04896 1.70176 1.02631 1.48784 1.34325 0.84665 0.77522 0.79809 0.74329 1.18209 1.19664 1.18187 1.21241 0.94576 1.12008 0.98401 1.20880 0.93041 0.95364 0.97443 1.21784 0.87344 0.94024 1.01905 0.92058 0.85063 0.91976 0.91573 0.88968 0.91204 0.89486 0.90980 0.94272 0.89314 0.93320 0.84029 0.87020 0.91895 0.86556 0.84624 0.90182 0.94468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.80 10.50 -51.38 -0.54 -6.34 16 3 C 0.47 9.00 7.25 71.24 0.52 9.52 16 4 O -0.54 -13.22 15.73 21.95 0.35 -12.87 16 5 C -0.07 -1.24 2.79 -11.49 -0.03 -1.27 16 6 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 7 C -0.10 -1.47 5.22 30.67 0.16 -1.31 16 8 C -0.11 -1.84 6.09 30.65 0.19 -1.65 16 9 C 0.04 0.91 5.16 86.32 0.45 1.36 16 10 N -0.54 -11.78 4.65 -900.94 -4.19 -15.96 16 11 C 0.12 2.70 5.12 85.56 0.44 3.14 16 12 C -0.15 -4.59 4.88 -19.83 -0.10 -4.69 16 13 C -0.06 -1.86 7.87 22.25 0.18 -1.69 16 14 C -0.20 -8.58 9.99 22.39 0.22 -8.35 16 15 C 0.11 5.69 6.65 22.58 0.15 5.84 16 16 O -0.23 -14.11 9.76 -22.82 -0.22 -14.33 16 17 C -0.41 -24.14 9.49 67.92 0.64 -23.49 16 18 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 19 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 20 N -0.92 -56.80 13.67 21.61 0.30 -56.51 16 21 Si 1.02 43.08 29.55 68.60 2.03 45.11 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 25 C -0.24 -10.60 9.17 22.39 0.21 -10.40 16 26 C -0.05 -1.68 9.69 22.25 0.22 -1.47 16 27 C 0.08 1.51 4.04 86.33 0.35 1.85 16 28 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 29 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.07 1.78 5.77 -2.39 -0.01 1.76 16 36 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 1.89 7.93 -2.39 -0.02 1.87 16 38 H 0.05 1.04 8.06 -2.39 -0.02 1.02 16 39 H 0.14 3.65 7.97 -2.91 -0.02 3.62 16 40 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 41 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 42 H 0.12 5.20 5.64 -2.91 -0.02 5.18 16 43 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 44 H 0.08 1.61 7.99 -2.39 -0.02 1.59 16 45 H 0.04 0.76 8.08 -2.39 -0.02 0.74 16 Total: -1.00 -73.01 368.98 3.95 -69.07 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.98 Total: 23.86 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 5.24 Total: -32.02 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -3.89 Total: -72.47 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.42 Total: -33.54 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -73.01 3.95 -69.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264542059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.344 kcal (2) G-P(sol) polarization free energy of solvation -73.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds