Wall clock time and date at job start Tue Mar 31 2020 12:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00415 * 2 1 4 4 O 1.20822 * 119.99589 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00298 * 180.02562 * 3 2 1 6 6 C 1.53116 * 109.57103 * 299.70934 * 5 3 2 7 7 C 1.53042 * 109.27913 * 182.40810 * 6 5 3 8 8 N 1.46852 * 109.51839 * 59.18083 * 7 6 5 9 9 C 1.46902 * 110.99671 * 174.16007 * 8 7 6 10 10 C 1.50701 * 109.47040 * 169.99746 * 9 8 7 11 11 C 1.38297 * 119.93136 * 269.73251 * 10 9 8 12 12 C 1.38107 * 120.06833 * 179.72556 * 11 10 9 13 13 C 1.38880 * 119.92632 * 0.54348 * 12 11 10 14 14 O 1.35753 * 120.06540 * 179.74892 * 13 12 11 15 15 C 1.34833 * 116.99577 * 174.44188 * 14 13 12 16 16 H 1.07997 * 120.00098 * 5.05387 * 15 14 13 17 17 C 1.38653 * 119.99745 * 185.05409 * 15 14 13 18 18 N 1.31563 * 119.99980 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00128 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46799 * 90.00093 * 19 17 15 21 21 H 1.48501 * 109.47460 * 210.00163 * 19 17 15 22 22 H 1.48504 * 109.47160 * 330.00199 * 19 17 15 23 23 C 1.38884 * 119.86249 * 359.72687 * 13 12 11 24 24 C 1.38089 * 119.93087 * 0.02562 * 23 13 12 25 25 C 1.46844 * 111.19753 * 298.25545 * 8 7 6 26 26 C 1.53045 * 109.52154 * 61.74630 * 25 8 7 27 27 H 1.09001 * 109.46922 * 60.00094 * 1 2 3 28 28 H 1.08996 * 109.47391 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47284 * 300.00414 * 1 2 3 30 30 H 1.09005 * 109.52273 * 59.86639 * 5 3 2 31 31 H 1.09002 * 109.50419 * 62.47380 * 6 5 3 32 32 H 1.09001 * 109.50856 * 302.35311 * 6 5 3 33 33 H 1.08997 * 109.46040 * 299.16533 * 7 6 5 34 34 H 1.08993 * 109.46272 * 179.19420 * 7 6 5 35 35 H 1.08997 * 109.47204 * 290.00245 * 9 8 7 36 36 H 1.09003 * 109.46975 * 50.00530 * 9 8 7 37 37 H 1.07999 * 119.96581 * 359.97438 * 11 10 9 38 38 H 1.07999 * 120.03226 * 180.27139 * 12 11 10 39 39 H 0.97001 * 119.99997 * 179.97438 * 18 17 15 40 40 H 1.07994 * 120.02996 * 179.97438 * 23 13 12 41 41 H 1.08002 * 119.96634 * 180.02562 * 24 23 13 42 42 H 1.08997 * 109.45945 * 181.75715 * 25 8 7 43 43 H 1.08994 * 109.46812 * 301.74108 * 25 8 7 44 44 H 1.08996 * 109.49942 * 60.76179 * 26 25 8 45 45 H 1.09002 * 109.49968 * 180.83899 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1164 0.5874 1.2521 7 6 5.6406 0.7236 1.2752 8 7 6.0061 2.1460 1.2751 9 6 7.4562 2.3168 1.4365 10 6 7.8231 3.7571 1.1875 11 6 8.1543 4.1741 -0.0889 12 6 8.4855 5.4946 -0.3213 13 6 8.4965 6.4016 0.7304 14 8 8.8266 7.6991 0.5060 15 6 8.7063 8.5497 1.5452 16 1 8.4393 8.1745 2.5221 17 6 8.9253 9.9062 1.3596 18 7 9.2500 10.3634 0.1695 19 14 8.7580 11.0849 2.7991 20 1 10.0690 11.2198 3.4833 21 1 8.3198 12.4140 2.3024 22 1 7.7521 10.5579 3.7561 23 6 8.1688 5.9784 2.0120 24 6 7.8336 4.6579 2.2369 25 6 5.5293 2.8166 0.0589 26 6 4.0018 2.7427 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.9567 0.7790 -0.8894 31 1 3.8458 -0.4684 1.2364 32 1 3.6955 1.0584 2.1404 33 1 6.0618 0.2403 0.3937 34 1 6.0342 0.2476 2.1732 35 1 7.7443 2.0385 2.4502 36 1 7.9787 1.6802 0.7224 37 1 8.1501 3.4672 -0.9054 38 1 8.7398 5.8205 -1.3190 39 1 9.4029 11.3124 0.0396 40 1 8.1770 6.6813 2.8318 41 1 7.5783 4.3283 3.2332 42 1 5.8421 3.8606 0.0735 43 1 5.9509 2.3234 -0.8169 44 1 3.5791 3.2477 0.8680 45 1 3.6492 3.2276 -0.9109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264563612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:23 Heat of formation + Delta-G solvation = -87.917016 kcal Electronic energy + Delta-G solvation = -26346.496680 eV Core-core repulsion = 22522.620019 eV Total energy + Delta-G solvation = -3823.876661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91662 -39.47161 -38.53856 -36.85711 -36.41963 -33.86675 -32.26578 -31.02457 -30.22405 -29.75049 -28.13595 -26.29360 -25.21457 -23.50077 -23.22316 -21.97106 -21.27953 -20.30493 -19.73844 -17.99132 -17.78585 -17.04522 -16.92316 -16.65454 -15.68730 -15.29340 -14.84256 -14.53547 -14.39966 -14.32894 -13.91812 -13.75053 -13.70754 -13.48518 -13.27922 -12.99030 -12.74041 -12.63960 -12.42234 -12.30318 -11.91743 -11.63842 -11.34323 -11.31114 -11.23889 -11.08626 -10.93151 -10.85144 -10.69822 -10.63806 -10.43181 -10.40779 -10.29858 -9.32964 -8.83383 -8.25536 -8.16519 -7.16803 -6.45298 -4.03938 1.98244 2.19870 2.27402 2.45796 3.13000 3.14573 3.19308 3.95850 3.97877 4.34476 4.48846 4.59212 4.65116 4.79705 4.87186 4.96404 5.03566 5.09716 5.19016 5.22015 5.25936 5.27705 5.38407 5.41844 5.50756 5.54220 5.71087 5.74328 5.77111 5.86478 5.90087 5.93395 6.08798 6.18694 6.21078 6.28122 6.43261 6.68811 6.89913 7.03636 7.09301 7.17585 7.28078 7.40564 7.44564 7.51921 7.81676 7.99898 9.00502 9.70156 10.72623 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.002514 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.676835 B =11133.386419 C =11868.167187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.464 3.536 4 O -0.503 6.503 5 C -0.080 4.080 6 C -0.105 4.105 7 C 0.056 3.944 8 N -0.535 5.535 9 C 0.115 3.885 10 C -0.188 4.188 11 C -0.068 4.068 12 C -0.194 4.194 13 C 0.156 3.844 14 O -0.177 6.177 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.235 4.235 24 C -0.049 4.049 25 C 0.054 3.946 26 C -0.101 4.101 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.032 0.968 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.031 0.969 44 H 0.081 0.919 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.039 -21.647 0.896 24.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.307 3.693 4 O -0.389 6.389 5 C -0.099 4.099 6 C -0.143 4.143 7 C -0.072 4.072 8 N -0.260 5.260 9 C -0.012 4.012 10 C -0.189 4.189 11 C -0.087 4.087 12 C -0.213 4.213 13 C 0.102 3.898 14 O -0.080 6.080 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.191 1.191 23 C -0.255 4.255 24 C -0.067 4.067 25 C -0.074 4.074 26 C -0.139 4.139 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.125 0.875 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.126 0.874 42 H 0.117 0.883 43 H 0.049 0.951 44 H 0.100 0.900 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.368 -20.775 0.988 23.702 hybrid contribution 0.012 0.284 0.009 0.284 sum -11.356 -20.491 0.997 23.449 Atomic orbital electron populations 1.23254 0.76547 1.03570 1.02589 1.86510 1.23292 1.33760 1.84208 1.23931 0.92128 0.81202 0.72028 1.90683 1.67139 1.36357 1.44740 1.21222 0.86455 1.00403 1.01814 1.21578 0.95835 1.00462 0.96441 1.22056 0.94615 0.89422 1.01066 1.62078 1.14340 1.11473 1.38112 1.20800 0.86079 0.93641 1.00650 1.19076 1.11130 0.94734 0.93980 1.20493 0.98203 0.94521 0.95508 1.20170 1.10560 0.92630 0.97931 1.19403 0.91535 0.86062 0.92802 1.83977 1.72833 1.13064 1.38174 1.21334 1.49274 0.87297 0.88827 0.89016 1.25295 0.96517 0.96566 0.98155 1.70041 1.43251 1.14963 1.21476 0.85713 0.78910 0.79181 0.79653 1.19885 1.20251 1.19146 1.21164 1.10292 0.96602 0.97420 1.20574 0.96204 0.92414 0.97558 1.22214 0.93403 1.01634 0.90118 1.21557 0.95879 0.92512 1.03959 0.91955 0.88171 0.91897 0.87743 0.90355 0.90456 0.94766 0.90256 0.90699 0.94940 0.87534 0.86620 0.92017 0.85598 0.87392 0.88273 0.95092 0.90001 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.48 10.50 -39.26 -0.41 -3.90 16 3 C 0.46 5.25 7.26 36.01 0.26 5.51 16 4 O -0.50 -7.23 15.73 -18.75 -0.29 -7.52 16 5 C -0.08 -0.78 2.69 -91.65 -0.25 -1.03 16 6 C -0.11 -0.92 5.31 -26.65 -0.14 -1.07 16 7 C 0.06 0.53 5.42 -3.83 -0.02 0.51 16 8 N -0.54 -6.54 4.80 -236.11 -1.13 -7.67 16 9 C 0.11 1.48 5.43 -4.97 -0.03 1.45 16 10 C -0.19 -3.06 4.12 -104.58 -0.43 -3.49 16 11 C -0.07 -1.17 7.80 -39.61 -0.31 -1.47 16 12 C -0.19 -3.99 9.99 -39.39 -0.39 -4.39 16 13 C 0.16 3.73 6.65 -39.10 -0.26 3.47 16 14 O -0.18 -5.04 9.76 0.03 0.00 -5.04 16 15 C -0.39 -10.91 9.49 30.89 0.29 -10.62 16 16 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -25.30 13.67 55.48 0.76 -24.54 16 19 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 C -0.24 -5.06 9.17 -39.40 -0.36 -5.42 16 24 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 25 C 0.05 0.68 4.58 -3.83 -0.02 0.66 16 26 C -0.10 -1.21 4.68 -26.65 -0.12 -1.33 16 27 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 35 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 36 H 0.03 0.39 8.02 -51.93 -0.42 -0.03 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 41 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 42 H 0.10 1.52 5.65 -51.93 -0.29 1.23 16 43 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -31.81 368.17 -8.49 -40.30 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.75 Total: 3.46 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -1.19 Total: -16.20 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: -0.37 Total: -32.21 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.71 Total: -16.46 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.81 -8.49 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264563612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.616 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds