Wall clock time and date at job start Tue Mar 31 2020 12:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00415 * 2 1 4 4 O 1.20822 * 119.99589 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00298 * 180.02562 * 3 2 1 6 6 C 1.53116 * 109.57103 * 299.70934 * 5 3 2 7 7 C 1.53042 * 109.27913 * 182.40810 * 6 5 3 8 8 N 1.46852 * 109.51839 * 59.18083 * 7 6 5 9 9 C 1.46902 * 110.99671 * 174.16007 * 8 7 6 10 10 C 1.50701 * 109.47040 * 169.99746 * 9 8 7 11 11 C 1.38297 * 119.93136 * 269.73251 * 10 9 8 12 12 C 1.38107 * 120.06833 * 179.72556 * 11 10 9 13 13 C 1.38880 * 119.92632 * 0.54348 * 12 11 10 14 14 O 1.35753 * 120.06540 * 179.74892 * 13 12 11 15 15 C 1.34833 * 116.99577 * 174.44188 * 14 13 12 16 16 H 1.07997 * 120.00098 * 5.05387 * 15 14 13 17 17 C 1.38653 * 119.99745 * 185.05409 * 15 14 13 18 18 N 1.31563 * 119.99980 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00128 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46799 * 90.00093 * 19 17 15 21 21 H 1.48501 * 109.47460 * 210.00163 * 19 17 15 22 22 H 1.48504 * 109.47160 * 330.00199 * 19 17 15 23 23 C 1.38884 * 119.86249 * 359.72687 * 13 12 11 24 24 C 1.38089 * 119.93087 * 0.02562 * 23 13 12 25 25 C 1.46844 * 111.19753 * 298.25545 * 8 7 6 26 26 C 1.53045 * 109.52154 * 61.74630 * 25 8 7 27 27 H 1.09001 * 109.46922 * 60.00094 * 1 2 3 28 28 H 1.08996 * 109.47391 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47284 * 300.00414 * 1 2 3 30 30 H 1.09005 * 109.52273 * 59.86639 * 5 3 2 31 31 H 1.09002 * 109.50419 * 62.47380 * 6 5 3 32 32 H 1.09001 * 109.50856 * 302.35311 * 6 5 3 33 33 H 1.08997 * 109.46040 * 299.16533 * 7 6 5 34 34 H 1.08993 * 109.46272 * 179.19420 * 7 6 5 35 35 H 1.08997 * 109.47204 * 290.00245 * 9 8 7 36 36 H 1.09003 * 109.46975 * 50.00530 * 9 8 7 37 37 H 1.07999 * 119.96581 * 359.97438 * 11 10 9 38 38 H 1.07999 * 120.03226 * 180.27139 * 12 11 10 39 39 H 0.97001 * 119.99997 * 179.97438 * 18 17 15 40 40 H 1.07994 * 120.02996 * 179.97438 * 23 13 12 41 41 H 1.08002 * 119.96634 * 180.02562 * 24 23 13 42 42 H 1.08997 * 109.45945 * 181.75715 * 25 8 7 43 43 H 1.08994 * 109.46812 * 301.74108 * 25 8 7 44 44 H 1.08996 * 109.49942 * 60.76179 * 26 25 8 45 45 H 1.09002 * 109.49968 * 180.83899 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1164 0.5874 1.2521 7 6 5.6406 0.7236 1.2752 8 7 6.0061 2.1460 1.2751 9 6 7.4562 2.3168 1.4365 10 6 7.8231 3.7571 1.1875 11 6 8.1543 4.1741 -0.0889 12 6 8.4855 5.4946 -0.3213 13 6 8.4965 6.4016 0.7304 14 8 8.8266 7.6991 0.5060 15 6 8.7063 8.5497 1.5452 16 1 8.4393 8.1745 2.5221 17 6 8.9253 9.9062 1.3596 18 7 9.2500 10.3634 0.1695 19 14 8.7580 11.0849 2.7991 20 1 10.0690 11.2198 3.4833 21 1 8.3198 12.4140 2.3024 22 1 7.7521 10.5579 3.7561 23 6 8.1688 5.9784 2.0120 24 6 7.8336 4.6579 2.2369 25 6 5.5293 2.8166 0.0589 26 6 4.0018 2.7427 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.9567 0.7790 -0.8894 31 1 3.8458 -0.4684 1.2364 32 1 3.6955 1.0584 2.1404 33 1 6.0618 0.2403 0.3937 34 1 6.0342 0.2476 2.1732 35 1 7.7443 2.0385 2.4502 36 1 7.9787 1.6802 0.7224 37 1 8.1501 3.4672 -0.9054 38 1 8.7398 5.8205 -1.3190 39 1 9.4029 11.3124 0.0396 40 1 8.1770 6.6813 2.8318 41 1 7.5783 4.3283 3.2332 42 1 5.8421 3.8606 0.0735 43 1 5.9509 2.3234 -0.8169 44 1 3.5791 3.2477 0.8680 45 1 3.6492 3.2276 -0.9109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264563612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:22 Heat of formation + Delta-G solvation = -107.854595 kcal Electronic energy + Delta-G solvation = -26347.361239 eV Core-core repulsion = 22522.620019 eV Total energy + Delta-G solvation = -3824.741219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.77696 -40.91780 -39.79007 -38.18209 -37.50815 -34.97701 -34.18626 -31.97409 -31.73648 -31.06992 -28.91039 -27.70809 -26.77984 -24.56590 -24.20616 -23.51300 -22.26862 -21.65071 -20.61762 -19.81921 -18.80977 -18.63915 -17.84574 -17.46142 -16.68170 -16.45137 -16.40422 -16.17815 -15.55203 -15.49111 -15.19398 -15.02850 -14.98928 -14.50309 -14.46020 -14.26696 -14.08646 -13.77409 -13.59730 -13.29492 -13.12389 -12.89890 -12.85339 -12.43084 -12.38146 -12.20887 -12.15208 -12.14537 -11.99195 -11.84328 -11.70247 -11.35508 -11.26239 -11.15547 -10.78163 -9.73839 -9.20840 -8.81813 -8.47137 -6.14886 0.61872 0.69372 1.12455 1.34462 1.43590 1.51939 1.72674 2.17674 2.75701 3.04900 3.32048 3.53235 3.53898 3.74100 3.82822 3.99369 4.09557 4.20761 4.21970 4.29970 4.31150 4.32094 4.41031 4.44838 4.55731 4.62435 4.68745 4.71159 4.77080 4.81082 4.86469 4.92889 5.03613 5.09783 5.14729 5.16734 5.17781 5.28961 5.32962 5.40065 5.58467 5.73911 5.83913 6.03775 6.17269 6.22245 6.33304 6.68924 6.97893 7.79271 8.76115 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.002514 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.676835 B =11133.386419 C =11868.167187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.543 6.543 5 C -0.075 4.075 6 C -0.099 4.099 7 C 0.057 3.943 8 N -0.548 5.548 9 C 0.117 3.883 10 C -0.158 4.158 11 C -0.057 4.057 12 C -0.205 4.205 13 C 0.113 3.887 14 O -0.233 6.233 15 C -0.412 4.412 16 H 0.100 0.900 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.262 1.262 21 H -0.271 1.271 22 H -0.255 1.255 23 C -0.245 4.245 24 C -0.051 4.051 25 C 0.059 3.941 26 C -0.097 4.097 27 H 0.058 0.942 28 H 0.134 0.866 29 H 0.058 0.942 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.144 0.856 38 H 0.111 0.889 39 H 0.272 0.728 40 H 0.115 0.885 41 H 0.136 0.864 42 H 0.065 0.935 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.783 -25.918 2.039 28.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.432 6.432 5 C -0.094 4.094 6 C -0.137 4.137 7 C -0.070 4.070 8 N -0.274 5.274 9 C -0.009 4.009 10 C -0.158 4.158 11 C -0.075 4.075 12 C -0.224 4.224 13 C 0.063 3.937 14 O -0.140 6.140 15 C -0.488 4.488 16 H 0.118 0.882 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.837 3.163 20 H -0.187 1.187 21 H -0.196 1.196 22 H -0.178 1.178 23 C -0.264 4.264 24 C -0.070 4.070 25 C -0.069 4.069 26 C -0.136 4.136 27 H 0.077 0.923 28 H 0.152 0.848 29 H 0.076 0.924 30 H 0.147 0.853 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.162 0.838 38 H 0.129 0.871 39 H 0.081 0.919 40 H 0.133 0.867 41 H 0.154 0.846 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.125 -25.139 2.143 27.992 hybrid contribution 0.093 1.175 -0.386 1.240 sum -12.031 -23.964 1.756 26.872 Atomic orbital electron populations 1.23535 0.75120 1.05730 1.02257 1.86497 1.24694 1.32622 1.83606 1.24230 0.92714 0.81082 0.70877 1.90675 1.68087 1.37722 1.46760 1.21224 0.85586 0.98947 1.03628 1.21569 0.95550 1.01559 0.94991 1.22161 0.94706 0.87348 1.02755 1.62027 1.13603 1.13804 1.37941 1.20851 0.86899 0.90692 1.02492 1.19612 1.06706 0.96672 0.92857 1.20873 0.96137 0.93337 0.97153 1.20428 1.10867 0.93905 0.97195 1.19959 0.93575 0.85347 0.94829 1.83938 1.76090 1.14973 1.39009 1.21797 1.49568 0.88076 0.89363 0.88249 1.26579 0.95981 0.98173 1.01387 1.70185 1.46144 1.15427 1.24177 0.84601 0.79509 0.76359 0.75840 1.18652 1.19596 1.17836 1.21247 1.10763 0.98197 0.96231 1.20908 0.95355 0.91066 0.99628 1.22071 0.93668 0.99961 0.91229 1.21431 0.95550 0.94149 1.02429 0.92282 0.84761 0.92354 0.85304 0.87881 0.91864 0.92952 0.88553 0.88954 0.92617 0.83788 0.87072 0.91875 0.86746 0.84599 0.91622 0.93322 0.92564 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.36 -6.00 10.50 -51.42 -0.54 -6.54 16 3 C 0.47 9.77 7.26 71.24 0.52 10.29 16 4 O -0.54 -15.50 15.73 21.98 0.35 -15.16 16 5 C -0.07 -1.26 2.69 -11.46 -0.03 -1.29 16 6 C -0.10 -1.35 5.31 30.65 0.16 -1.18 16 7 C 0.06 0.77 5.42 86.33 0.47 1.24 16 8 N -0.55 -11.15 4.80 -900.92 -4.32 -15.47 16 9 C 0.12 2.43 5.43 85.56 0.46 2.89 16 10 C -0.16 -4.66 4.12 -19.83 -0.08 -4.74 16 11 C -0.06 -1.81 7.80 22.25 0.17 -1.63 16 12 C -0.20 -8.63 9.99 22.39 0.22 -8.41 16 13 C 0.11 5.69 6.65 22.58 0.15 5.84 16 14 O -0.23 -14.26 9.76 -22.80 -0.22 -14.48 16 15 C -0.41 -24.42 9.49 67.92 0.64 -23.77 16 16 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 17 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 18 N -0.92 -57.34 13.67 21.61 0.30 -57.05 16 19 Si 1.02 43.72 29.55 68.60 2.03 45.74 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 22 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 23 C -0.25 -10.81 9.17 22.39 0.21 -10.60 16 24 C -0.05 -1.76 9.69 22.25 0.22 -1.54 16 25 C 0.06 1.32 4.58 86.33 0.40 1.72 16 26 C -0.10 -2.21 4.68 30.65 0.14 -2.06 16 27 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 28 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 30 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.10 1.04 8.12 -2.39 -0.02 1.03 16 35 H 0.09 1.70 8.08 -2.39 -0.02 1.68 16 36 H 0.06 0.97 8.02 -2.39 -0.02 0.95 16 37 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 38 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 39 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.11 5.20 5.64 -2.91 -0.02 5.19 16 41 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 42 H 0.07 1.92 5.65 -2.39 -0.01 1.91 16 43 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 1.55 8.04 -2.39 -0.02 1.53 16 45 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -76.18 368.17 3.88 -72.30 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.98 Total: 23.32 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 5.31 Total: -32.66 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -4.03 Total: -72.52 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -0.42 Total: -36.18 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -76.18 3.88 -72.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264563612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.556 kcal (2) G-P(sol) polarization free energy of solvation -76.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds