Wall clock time and date at job start Tue Mar 31 2020 12:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00349 * 2 1 4 4 O 1.20825 * 119.99633 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99926 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.45549 * 30.24872 * 5 3 2 7 7 C 1.53040 * 109.46083 * 270.27243 * 5 3 2 8 8 C 1.53121 * 109.27703 * 180.80849 * 7 5 3 9 9 C 1.53114 * 109.16322 * 57.65118 * 8 7 5 10 10 C 1.53037 * 109.28062 * 302.35235 * 9 8 7 11 11 N 1.46846 * 109.45855 * 150.22223 * 5 3 2 12 12 C 1.46897 * 110.99951 * 305.85161 * 11 5 3 13 13 C 1.50698 * 109.46979 * 164.27204 * 12 11 5 14 14 C 1.38303 * 119.93307 * 90.00090 * 13 12 11 15 15 C 1.38095 * 120.07339 * 179.97438 * 14 13 12 16 16 C 1.38882 * 119.93070 * 0.02562 * 15 14 13 17 17 O 1.35752 * 120.07396 * 179.97438 * 16 15 14 18 18 C 1.34833 * 116.99440 * 5.96774 * 17 16 15 19 19 H 1.07993 * 120.00092 * 5.44911 * 18 17 16 20 20 C 1.38659 * 119.99569 * 185.44671 * 18 17 16 21 21 N 1.31557 * 119.99646 * 180.28141 * 20 18 17 22 22 Si 1.86796 * 120.00105 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46933 * 90.00198 * 22 20 18 24 24 H 1.48494 * 109.47297 * 210.00015 * 22 20 18 25 25 H 1.48501 * 109.47479 * 330.00198 * 22 20 18 26 26 C 1.38879 * 119.86196 * 0.24858 * 16 15 14 27 27 C 1.38104 * 119.92709 * 359.50002 * 26 16 15 28 28 H 1.09005 * 109.46933 * 300.00319 * 1 2 3 29 29 H 1.09002 * 109.46837 * 59.99831 * 1 2 3 30 30 H 1.09001 * 109.47575 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.50405 * 300.74935 * 7 5 3 32 32 H 1.09002 * 109.50313 * 60.86408 * 7 5 3 33 33 H 1.08997 * 109.52259 * 177.56228 * 8 7 5 34 34 H 1.09009 * 109.51432 * 297.74948 * 8 7 5 35 35 H 1.09004 * 109.50004 * 62.28715 * 9 8 7 36 36 H 1.08994 * 109.50395 * 182.36716 * 9 8 7 37 37 H 1.09004 * 109.45682 * 299.15764 * 10 9 8 38 38 H 1.09005 * 109.46349 * 179.19314 * 10 9 8 39 39 H 1.09003 * 109.47459 * 44.27489 * 12 11 5 40 40 H 1.08998 * 109.47637 * 284.27018 * 12 11 5 41 41 H 1.07997 * 119.96260 * 359.97438 * 14 13 12 42 42 H 1.08002 * 120.03733 * 179.97438 * 15 14 13 43 43 H 0.97000 * 119.99718 * 179.72530 * 21 20 18 44 44 H 1.08000 * 120.04212 * 179.72871 * 26 16 15 45 45 H 1.08004 * 119.96335 * 180.27348 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9752 0.4072 -0.5186 7 6 4.0765 1.2942 1.4422 8 6 5.6044 1.3946 1.4368 9 6 6.0227 2.6540 0.6731 10 6 5.4561 2.5952 -0.7473 11 7 3.9919 2.5005 -0.6881 12 6 3.4043 2.5812 -2.0321 13 6 3.5334 3.9895 -2.5529 14 6 4.6551 4.3590 -3.2726 15 6 4.7761 5.6486 -3.7517 16 6 3.7700 6.5749 -3.5097 17 8 3.8862 7.8435 -3.9789 18 6 4.9413 8.1070 -4.7760 19 1 5.5971 7.3069 -5.0858 20 6 5.1840 9.4053 -5.1981 21 7 6.2102 9.6615 -5.9804 22 14 4.0490 10.7890 -4.6630 23 1 4.5465 11.3736 -3.3917 24 1 4.0196 11.8390 -5.7125 25 1 2.6786 10.2544 -4.4591 26 6 2.6474 6.2024 -2.7819 27 6 2.5300 4.9098 -2.3099 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.6572 2.1539 1.9649 32 1 3.7738 0.3771 1.9476 33 1 5.9693 1.4524 2.4623 34 1 6.0254 0.5157 0.9484 35 1 5.6340 3.5351 1.1836 36 1 7.1104 2.7089 0.6296 37 1 5.8560 1.7214 -1.2619 38 1 5.7401 3.4973 -1.2893 39 1 2.3506 2.3064 -1.9851 40 1 3.9288 1.8976 -2.6996 41 1 5.4373 3.6384 -3.4600 42 1 5.6525 5.9366 -4.3132 43 1 6.3777 10.5691 -6.2789 44 1 1.8654 6.9216 -2.5883 45 1 1.6552 4.6183 -1.7476 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264572178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:19 Heat of formation + Delta-G solvation = -81.112027 kcal Electronic energy + Delta-G solvation = -27020.934036 eV Core-core repulsion = 23197.352461 eV Total energy + Delta-G solvation = -3823.581575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00578 -39.33083 -38.64900 -36.69961 -36.50079 -33.77467 -32.34480 -31.67626 -30.17937 -29.74072 -28.08531 -26.20890 -24.98092 -24.30320 -22.88642 -22.01171 -21.13502 -20.26811 -19.84065 -17.88478 -17.81582 -17.21301 -17.03898 -16.55682 -15.62565 -15.27209 -14.99680 -14.62868 -14.36639 -14.09203 -13.98670 -13.81725 -13.70418 -13.39743 -13.32923 -13.18527 -12.75740 -12.54235 -12.46477 -12.31414 -12.13306 -11.73613 -11.58018 -11.27033 -11.14088 -11.08769 -10.92134 -10.82475 -10.71267 -10.59638 -10.42655 -10.22622 -10.10244 -9.37350 -8.84284 -8.39957 -8.17121 -7.27070 -6.39660 -4.05810 2.01375 2.17638 2.23467 2.40787 3.24015 3.27912 3.43176 3.79632 4.26253 4.43494 4.52266 4.60498 4.70098 4.81921 4.85448 4.90907 4.93877 4.95436 5.00731 5.11651 5.23028 5.27123 5.31294 5.34354 5.49872 5.59920 5.63349 5.70888 5.72766 5.76296 5.88392 5.91755 6.04105 6.15156 6.19013 6.20063 6.40273 6.64941 6.84118 6.87141 6.96241 7.13917 7.31606 7.38013 7.62791 7.67230 7.82802 8.07018 8.96142 9.59817 10.68181 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019539 B = 0.002983 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.721252 B = 9384.324379 C =10189.975094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.460 3.540 4 O -0.478 6.478 5 C 0.098 3.902 6 H 0.070 0.930 7 C -0.106 4.106 8 C -0.117 4.117 9 C -0.121 4.121 10 C 0.056 3.944 11 N -0.513 5.513 12 C 0.106 3.894 13 C -0.166 4.166 14 C -0.068 4.068 15 C -0.222 4.222 16 C 0.162 3.838 17 O -0.218 6.218 18 C -0.388 4.388 19 H 0.105 0.895 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.194 4.194 27 C -0.049 4.049 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.105 0.895 42 H 0.132 0.868 43 H 0.279 0.721 44 H 0.116 0.884 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.918 -20.885 13.709 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.282 6.282 3 C 0.301 3.699 4 O -0.362 6.362 5 C -0.012 4.012 6 H 0.087 0.913 7 C -0.144 4.144 8 C -0.154 4.154 9 C -0.158 4.158 10 C -0.071 4.071 11 N -0.240 5.240 12 C -0.020 4.020 13 C -0.167 4.167 14 C -0.087 4.087 15 C -0.241 4.241 16 C 0.110 3.890 17 O -0.124 6.124 18 C -0.463 4.463 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.213 4.213 27 C -0.067 4.067 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.123 0.877 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.134 0.866 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.351 -19.814 13.878 24.775 hybrid contribution -0.186 0.016 -0.438 0.476 sum -5.537 -19.797 13.440 24.561 Atomic orbital electron populations 1.23259 0.76295 1.03571 1.02717 1.86504 1.23464 1.33764 1.84419 1.23632 0.91813 0.81459 0.73019 1.90706 1.66569 1.36028 1.42891 1.21226 0.87147 0.94244 0.98580 0.91269 1.21569 0.96841 1.03149 0.92862 1.21567 0.94345 0.98520 1.01006 1.21639 1.00231 0.98536 0.95428 1.22215 0.85500 1.01973 0.97421 1.61823 1.09424 1.33520 1.19201 1.20940 0.99283 0.94797 0.87012 1.19000 0.97196 0.94930 1.05573 1.20627 0.96109 0.95367 0.96580 1.21213 1.01354 0.93886 1.07645 1.19153 0.93176 0.84918 0.91770 1.83595 1.46088 1.24095 1.58575 1.20757 1.04621 0.96306 1.24666 0.87718 1.24466 0.96382 0.97468 0.95707 1.69649 1.27103 1.21986 1.33194 0.86184 0.81905 0.80479 0.78367 1.19907 1.20822 1.18327 1.20221 0.98337 0.96931 1.05848 1.20519 0.97772 0.91806 0.96632 0.91869 0.91782 0.88175 0.90119 0.90795 0.91144 0.91915 0.90624 0.91132 0.94848 0.88807 0.90783 0.94607 0.87666 0.85047 0.91100 0.86630 0.86653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.78 10.57 -39.25 -0.41 -4.19 16 3 C 0.46 5.61 5.79 36.01 0.21 5.82 16 4 O -0.48 -7.26 15.18 -18.75 -0.28 -7.54 16 5 C 0.10 1.06 2.34 -68.87 -0.16 0.90 16 6 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 7 C -0.11 -0.95 5.36 -26.65 -0.14 -1.10 16 8 C -0.12 -0.92 6.00 -26.61 -0.16 -1.08 16 9 C -0.12 -1.17 6.09 -26.65 -0.16 -1.33 16 10 C 0.06 0.65 5.24 -3.83 -0.02 0.63 16 11 N -0.51 -6.70 4.20 -229.51 -0.96 -7.66 16 12 C 0.11 1.52 4.76 -4.98 -0.02 1.50 16 13 C -0.17 -2.87 5.05 -104.57 -0.53 -3.40 16 14 C -0.07 -1.23 8.08 -39.61 -0.32 -1.55 16 15 C -0.22 -4.81 9.13 -39.40 -0.36 -5.17 16 16 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 17 O -0.22 -5.88 8.59 0.04 0.00 -5.88 16 18 C -0.39 -11.04 9.90 30.89 0.31 -10.74 16 19 H 0.11 3.04 5.53 -52.49 -0.29 2.75 16 20 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 21 N -0.88 -25.65 13.96 55.48 0.77 -24.88 16 22 Si 0.91 22.00 28.62 -169.99 -4.86 17.13 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 26 C -0.19 -4.05 9.99 -39.39 -0.39 -4.44 16 27 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 28 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 1.27 5.88 -51.93 -0.31 0.96 16 39 H 0.07 1.10 5.66 -51.93 -0.29 0.80 16 40 H 0.04 0.47 8.00 -51.93 -0.42 0.05 16 41 H 0.11 1.63 7.83 -52.49 -0.41 1.21 16 42 H 0.13 2.99 5.72 -52.49 -0.30 2.69 16 43 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 45 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 365.15 15.07 5.50 5.50 Total: -1.00 -31.49 365.15 -8.33 -39.82 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.65 Total: 2.37 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -1.43 Total: -14.67 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: -0.19 Total: -32.54 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.70 Total: -17.61 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.86 Total: 17.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.49 -8.33 -39.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264572178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.290 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds