Wall clock time and date at job start Tue Mar 31 2020 12:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00349 * 2 1 4 4 O 1.20825 * 119.99633 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99926 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.45549 * 30.24872 * 5 3 2 7 7 C 1.53040 * 109.46083 * 270.27243 * 5 3 2 8 8 C 1.53121 * 109.27703 * 180.80849 * 7 5 3 9 9 C 1.53114 * 109.16322 * 57.65118 * 8 7 5 10 10 C 1.53037 * 109.28062 * 302.35235 * 9 8 7 11 11 N 1.46846 * 109.45855 * 150.22223 * 5 3 2 12 12 C 1.46897 * 110.99951 * 305.85161 * 11 5 3 13 13 C 1.50698 * 109.46979 * 164.27204 * 12 11 5 14 14 C 1.38303 * 119.93307 * 90.00090 * 13 12 11 15 15 C 1.38095 * 120.07339 * 179.97438 * 14 13 12 16 16 C 1.38882 * 119.93070 * 0.02562 * 15 14 13 17 17 O 1.35752 * 120.07396 * 179.97438 * 16 15 14 18 18 C 1.34833 * 116.99440 * 5.96774 * 17 16 15 19 19 H 1.07993 * 120.00092 * 5.44911 * 18 17 16 20 20 C 1.38659 * 119.99569 * 185.44671 * 18 17 16 21 21 N 1.31557 * 119.99646 * 180.28141 * 20 18 17 22 22 Si 1.86796 * 120.00105 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46933 * 90.00198 * 22 20 18 24 24 H 1.48494 * 109.47297 * 210.00015 * 22 20 18 25 25 H 1.48501 * 109.47479 * 330.00198 * 22 20 18 26 26 C 1.38879 * 119.86196 * 0.24858 * 16 15 14 27 27 C 1.38104 * 119.92709 * 359.50002 * 26 16 15 28 28 H 1.09005 * 109.46933 * 300.00319 * 1 2 3 29 29 H 1.09002 * 109.46837 * 59.99831 * 1 2 3 30 30 H 1.09001 * 109.47575 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.50405 * 300.74935 * 7 5 3 32 32 H 1.09002 * 109.50313 * 60.86408 * 7 5 3 33 33 H 1.08997 * 109.52259 * 177.56228 * 8 7 5 34 34 H 1.09009 * 109.51432 * 297.74948 * 8 7 5 35 35 H 1.09004 * 109.50004 * 62.28715 * 9 8 7 36 36 H 1.08994 * 109.50395 * 182.36716 * 9 8 7 37 37 H 1.09004 * 109.45682 * 299.15764 * 10 9 8 38 38 H 1.09005 * 109.46349 * 179.19314 * 10 9 8 39 39 H 1.09003 * 109.47459 * 44.27489 * 12 11 5 40 40 H 1.08998 * 109.47637 * 284.27018 * 12 11 5 41 41 H 1.07997 * 119.96260 * 359.97438 * 14 13 12 42 42 H 1.08002 * 120.03733 * 179.97438 * 15 14 13 43 43 H 0.97000 * 119.99718 * 179.72530 * 21 20 18 44 44 H 1.08000 * 120.04212 * 179.72871 * 26 16 15 45 45 H 1.08004 * 119.96335 * 180.27348 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9752 0.4072 -0.5186 7 6 4.0765 1.2942 1.4422 8 6 5.6044 1.3946 1.4368 9 6 6.0227 2.6540 0.6731 10 6 5.4561 2.5952 -0.7473 11 7 3.9919 2.5005 -0.6881 12 6 3.4043 2.5812 -2.0321 13 6 3.5334 3.9895 -2.5529 14 6 4.6551 4.3590 -3.2726 15 6 4.7761 5.6486 -3.7517 16 6 3.7700 6.5749 -3.5097 17 8 3.8862 7.8435 -3.9789 18 6 4.9413 8.1070 -4.7760 19 1 5.5971 7.3069 -5.0858 20 6 5.1840 9.4053 -5.1981 21 7 6.2102 9.6615 -5.9804 22 14 4.0490 10.7890 -4.6630 23 1 4.5465 11.3736 -3.3917 24 1 4.0196 11.8390 -5.7125 25 1 2.6786 10.2544 -4.4591 26 6 2.6474 6.2024 -2.7819 27 6 2.5300 4.9098 -2.3099 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.6572 2.1539 1.9649 32 1 3.7738 0.3771 1.9476 33 1 5.9693 1.4524 2.4623 34 1 6.0254 0.5157 0.9484 35 1 5.6340 3.5351 1.1836 36 1 7.1104 2.7089 0.6296 37 1 5.8560 1.7214 -1.2619 38 1 5.7401 3.4973 -1.2893 39 1 2.3506 2.3064 -1.9851 40 1 3.9288 1.8976 -2.6996 41 1 5.4373 3.6384 -3.4600 42 1 5.6525 5.9366 -4.3132 43 1 6.3777 10.5691 -6.2789 44 1 1.8654 6.9216 -2.5883 45 1 1.6552 4.6183 -1.7476 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264572178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:18 Heat of formation + Delta-G solvation = -99.757319 kcal Electronic energy + Delta-G solvation = -27021.742557 eV Core-core repulsion = 23197.352461 eV Total energy + Delta-G solvation = -3824.390095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.92286 -40.92034 -39.75933 -38.30744 -37.40187 -34.89003 -34.34236 -32.54857 -31.79769 -31.13956 -28.78047 -27.77035 -26.53521 -25.16257 -24.02775 -23.60993 -22.08032 -21.72877 -20.64682 -19.81409 -19.08368 -18.73104 -17.91485 -17.44412 -16.71929 -16.65226 -16.31385 -16.03618 -15.68864 -15.48682 -15.34013 -15.05608 -14.85559 -14.64536 -14.33292 -14.24823 -14.15361 -14.04734 -13.98340 -13.48263 -13.08225 -13.00580 -12.85100 -12.53740 -12.44614 -12.35775 -12.25492 -11.96672 -11.94684 -11.75058 -11.60444 -11.31995 -11.27682 -11.12335 -10.89935 -9.80593 -9.36297 -8.99631 -8.50767 -6.22732 0.55399 0.59303 1.12172 1.30489 1.34375 1.51192 1.61330 2.27628 2.62750 2.91361 3.10023 3.22412 3.66107 3.75415 3.89087 3.94210 4.02635 4.08514 4.16476 4.25512 4.28754 4.32837 4.32979 4.33902 4.51215 4.57124 4.58613 4.71591 4.74284 4.81740 4.84262 4.94622 4.97853 5.04392 5.19854 5.23871 5.27495 5.33960 5.36309 5.46836 5.56616 5.74163 5.78486 5.88450 5.93113 6.06285 6.22982 6.75920 6.83955 7.58816 8.60910 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019539 B = 0.002983 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.721252 B = 9384.324379 C =10189.975094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.516 6.516 5 C 0.097 3.903 6 H 0.093 0.907 7 C -0.103 4.103 8 C -0.110 4.110 9 C -0.120 4.120 10 C 0.054 3.946 11 N -0.531 5.531 12 C 0.110 3.890 13 C -0.141 4.141 14 C -0.059 4.059 15 C -0.232 4.232 16 C 0.124 3.876 17 O -0.246 6.246 18 C -0.398 4.398 19 H 0.082 0.918 20 C 0.012 3.988 21 N -0.922 5.922 22 Si 0.968 3.032 23 H -0.267 1.267 24 H -0.266 1.266 25 H -0.265 1.265 26 C -0.194 4.194 27 C -0.049 4.049 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.133 0.867 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.138 0.862 42 H 0.112 0.888 43 H 0.285 0.715 44 H 0.123 0.877 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.510 -23.872 15.529 29.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.304 3.696 4 O -0.403 6.403 5 C -0.012 4.012 6 H 0.110 0.890 7 C -0.141 4.141 8 C -0.147 4.147 9 C -0.157 4.157 10 C -0.073 4.073 11 N -0.258 5.258 12 C -0.017 4.017 13 C -0.142 4.142 14 C -0.078 4.078 15 C -0.251 4.251 16 C 0.075 3.925 17 O -0.154 6.154 18 C -0.474 4.474 19 H 0.100 0.900 20 C -0.187 4.187 21 N -0.563 5.563 22 Si 0.790 3.210 23 H -0.192 1.192 24 H -0.190 1.190 25 H -0.189 1.189 26 C -0.213 4.213 27 C -0.068 4.068 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.151 0.849 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.155 0.845 42 H 0.130 0.870 43 H 0.094 0.906 44 H 0.141 0.859 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.946 -22.860 15.720 28.374 hybrid contribution -0.085 0.575 -0.853 1.032 sum -6.031 -22.285 14.867 27.460 Atomic orbital electron populations 1.23532 0.74860 1.05685 1.02386 1.86498 1.24871 1.32691 1.83809 1.23946 0.92368 0.81370 0.71890 1.90692 1.67459 1.37289 1.44847 1.21370 0.86397 0.93812 0.99594 0.88982 1.21596 0.97553 1.03429 0.91531 1.21550 0.93407 0.97987 1.01777 1.21634 1.00894 0.98876 0.94342 1.22245 0.84754 1.01664 0.98609 1.61671 1.10306 1.35625 1.18210 1.20868 0.99810 0.92575 0.88424 1.19450 0.95602 0.96405 1.02774 1.20884 0.97150 0.94311 0.95441 1.21245 1.00507 0.95356 1.08041 1.19611 0.94882 0.84486 0.93556 1.83536 1.45946 1.25908 1.59968 1.20706 1.04930 0.96221 1.25536 0.90005 1.25243 0.97914 0.99663 0.95864 1.69723 1.28854 1.22887 1.34839 0.85255 0.79404 0.77744 0.78551 1.19162 1.19023 1.18939 1.20434 0.97614 0.98133 1.05154 1.20764 0.98714 0.91046 0.96240 0.91999 0.92395 0.84865 0.92040 0.88587 0.89686 0.90123 0.92679 0.89795 0.92805 0.91213 0.91000 0.92507 0.84455 0.87004 0.90556 0.85910 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -6.47 10.57 -51.40 -0.54 -7.02 16 3 C 0.46 10.14 5.79 71.24 0.41 10.55 16 4 O -0.52 -14.91 15.18 21.97 0.33 -14.58 16 5 C 0.10 1.80 2.34 44.19 0.10 1.90 16 6 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 7 C -0.10 -1.52 5.36 30.65 0.16 -1.36 16 8 C -0.11 -1.32 6.00 30.67 0.18 -1.14 16 9 C -0.12 -2.03 6.09 30.64 0.19 -1.84 16 10 C 0.05 1.11 5.24 86.33 0.45 1.56 16 11 N -0.53 -12.48 4.20 -880.05 -3.70 -16.18 16 12 C 0.11 2.84 4.76 85.56 0.41 3.25 16 13 C -0.14 -4.65 5.05 -19.83 -0.10 -4.75 16 14 C -0.06 -2.09 8.08 22.25 0.18 -1.91 16 15 C -0.23 -10.39 9.13 22.39 0.20 -10.19 16 16 C 0.12 6.04 6.65 22.58 0.15 6.19 16 17 O -0.25 -13.80 8.59 -22.79 -0.20 -14.00 16 18 C -0.40 -23.83 9.90 67.92 0.67 -23.16 16 19 H 0.08 5.10 5.53 -2.91 -0.02 5.08 16 20 C 0.01 0.68 5.49 84.83 0.47 1.15 16 21 N -0.92 -55.61 13.96 21.61 0.30 -55.31 16 22 Si 0.97 46.46 28.62 68.60 1.96 48.42 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 26 C -0.19 -8.16 9.99 22.39 0.22 -7.94 16 27 C -0.05 -1.77 9.69 22.25 0.22 -1.56 16 28 H 0.06 0.83 8.13 -2.38 -0.02 0.81 16 29 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 30 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.07 1.76 5.88 -2.38 -0.01 1.75 16 39 H 0.07 1.94 5.66 -2.39 -0.01 1.93 16 40 H 0.06 1.26 8.00 -2.39 -0.02 1.24 16 41 H 0.14 3.93 7.83 -2.91 -0.02 3.91 16 42 H 0.11 5.42 5.72 -2.91 -0.02 5.41 16 43 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 44 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 45 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -71.39 365.15 4.27 -67.12 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.99 Total: 19.20 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 5.12 Total: -27.67 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -3.40 Total: -71.48 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.41 Total: -35.59 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.96 Total: 48.42 kcal Total: -71.39 4.27 -67.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264572178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.633 kcal (2) G-P(sol) polarization free energy of solvation -71.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds