Wall clock time and date at job start Tue Mar 31 2020 12:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99705 * 2 1 4 4 O 1.20822 * 120.00049 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99653 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.45563 * 329.02885 * 5 3 2 7 7 C 1.53033 * 109.45895 * 89.00297 * 5 3 2 8 8 C 1.53123 * 109.27481 * 179.19177 * 7 5 3 9 9 C 1.53113 * 109.16208 * 302.34480 * 8 7 5 10 10 C 1.53042 * 109.27905 * 57.65818 * 9 8 7 11 11 N 1.46850 * 109.45827 * 209.05499 * 5 3 2 12 12 C 1.46899 * 111.00015 * 54.15099 * 11 5 3 13 13 C 1.50695 * 109.47235 * 199.99080 * 12 11 5 14 14 C 1.38303 * 119.93480 * 89.99521 * 13 12 11 15 15 C 1.38095 * 120.07208 * 180.02562 * 14 13 12 16 16 C 1.38882 * 119.93116 * 359.97438 * 15 14 13 17 17 O 1.35754 * 120.07176 * 179.97438 * 16 15 14 18 18 C 1.34824 * 116.99754 * 5.45982 * 17 16 15 19 19 H 1.07999 * 119.99986 * 355.08078 * 18 17 16 20 20 C 1.38652 * 120.00052 * 175.08302 * 18 17 16 21 21 N 1.31562 * 120.00432 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99908 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47147 * 269.99927 * 22 20 18 24 24 H 1.48504 * 109.47242 * 149.99596 * 22 20 18 25 25 H 1.48496 * 109.47086 * 29.99787 * 22 20 18 26 26 C 1.38886 * 119.86217 * 0.25176 * 16 15 14 27 27 C 1.38107 * 119.92552 * 359.49830 * 26 16 15 28 28 H 1.08999 * 109.46923 * 299.99302 * 1 2 3 29 29 H 1.08997 * 109.47175 * 59.99402 * 1 2 3 30 30 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.50491 * 59.25523 * 7 5 3 32 32 H 1.08998 * 109.51026 * 299.13520 * 7 5 3 33 33 H 1.09002 * 109.52047 * 182.44382 * 8 7 5 34 34 H 1.08993 * 109.52323 * 62.25523 * 8 7 5 35 35 H 1.09001 * 109.50980 * 297.71450 * 9 8 7 36 36 H 1.09001 * 109.54012 * 177.61306 * 9 8 7 37 37 H 1.08997 * 109.46675 * 180.80612 * 10 9 8 38 38 H 1.09001 * 109.45940 * 60.83075 * 10 9 8 39 39 H 1.08998 * 109.47548 * 79.98581 * 12 11 5 40 40 H 1.09000 * 109.47263 * 319.98849 * 12 11 5 41 41 H 1.07998 * 119.96251 * 0.04466 * 14 13 12 42 42 H 1.07998 * 120.03764 * 179.97438 * 15 14 13 43 43 H 0.96993 * 120.00437 * 180.02562 * 21 20 18 44 44 H 1.07997 * 120.03962 * 179.72537 * 26 16 15 45 45 H 1.07996 * 119.96018 * 180.23186 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9752 0.4138 0.5279 7 6 4.0762 1.2768 -1.4435 8 6 5.6041 1.3773 -1.4396 9 6 6.0224 2.6461 -0.6914 10 6 5.4561 2.6045 0.7298 11 7 3.9918 2.5091 0.6719 12 6 3.4045 2.6061 2.0149 13 6 3.4389 4.0404 2.4758 14 6 2.3742 4.8793 2.2011 15 6 2.4030 6.1944 2.6217 16 6 3.5024 6.6742 3.3216 17 8 3.5339 7.9666 3.7359 18 6 2.4208 8.7006 3.5361 19 1 1.5865 8.2799 2.9946 20 6 2.3474 9.9958 4.0257 21 7 1.2615 10.7123 3.8303 22 14 3.7908 10.7238 4.9616 23 1 3.6393 10.4326 6.4099 24 1 3.8253 12.1937 4.7531 25 1 5.0555 10.1237 4.4658 26 6 4.5721 5.8306 3.5918 27 6 4.5350 4.5151 3.1730 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.6568 2.1300 -1.9766 32 1 3.7736 0.3537 -1.9377 33 1 5.9688 1.4227 -2.4658 34 1 6.0253 0.5046 -0.9406 35 1 5.6336 3.5209 -1.2126 36 1 7.1101 2.7019 -0.6481 37 1 5.7401 3.5131 1.2607 38 1 5.8561 1.7371 1.2549 39 1 3.9764 1.9882 2.7072 40 1 2.3719 2.2585 1.9859 41 1 1.5193 4.5054 1.6574 42 1 1.5715 6.8491 2.4065 43 1 1.2102 11.6185 4.1725 44 1 5.4304 6.2019 4.1320 45 1 5.3649 3.8576 3.3861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264572179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:24 Heat of formation + Delta-G solvation = -80.077901 kcal Electronic energy + Delta-G solvation = -27053.128029 eV Core-core repulsion = 23229.591297 eV Total energy + Delta-G solvation = -3823.536732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98336 -39.30190 -38.64870 -36.68673 -36.46994 -33.77444 -32.32457 -31.67738 -30.22265 -29.68602 -28.05518 -26.25057 -24.91303 -24.24590 -23.02798 -21.92642 -21.13283 -20.25819 -19.85111 -17.84656 -17.80910 -17.19245 -17.01373 -16.55682 -15.59903 -15.31760 -14.96675 -14.54266 -14.28935 -14.19796 -13.92574 -13.83996 -13.72469 -13.39988 -13.37945 -13.15041 -12.68857 -12.59286 -12.45639 -12.29499 -12.14694 -11.66730 -11.57451 -11.26538 -11.12997 -11.09698 -10.90256 -10.82152 -10.71226 -10.61415 -10.43556 -10.21755 -10.09692 -9.31962 -8.82538 -8.39410 -8.15826 -7.25624 -6.37239 -4.03570 2.04970 2.19223 2.25219 2.43424 3.24434 3.27888 3.42876 3.79349 4.27072 4.44301 4.52153 4.62039 4.69759 4.81561 4.89590 4.89794 4.92469 4.98772 4.99528 5.14746 5.22348 5.29953 5.31235 5.32900 5.48647 5.58235 5.62355 5.68443 5.73129 5.80485 5.86835 5.88540 5.99610 6.17913 6.18220 6.23593 6.41287 6.63828 6.83595 6.89239 6.96291 7.12339 7.34081 7.43696 7.66128 7.69253 7.86703 8.09131 8.98151 9.61212 10.70587 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018026 B = 0.003074 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.915662 B = 9106.838785 C =10040.135615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.458 3.542 4 O -0.475 6.475 5 C 0.098 3.902 6 H 0.069 0.931 7 C -0.107 4.107 8 C -0.116 4.116 9 C -0.121 4.121 10 C 0.057 3.943 11 N -0.513 5.513 12 C 0.107 3.893 13 C -0.165 4.165 14 C -0.044 4.044 15 C -0.222 4.222 16 C 0.162 3.838 17 O -0.219 6.219 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.195 4.195 27 C -0.071 4.071 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.033 0.967 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.113 0.887 42 H 0.132 0.868 43 H 0.279 0.721 44 H 0.115 0.885 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.064 -23.361 -8.695 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.299 3.701 4 O -0.359 6.359 5 C -0.011 4.011 6 H 0.087 0.913 7 C -0.145 4.145 8 C -0.154 4.154 9 C -0.159 4.159 10 C -0.070 4.070 11 N -0.240 5.240 12 C -0.019 4.019 13 C -0.166 4.166 14 C -0.063 4.063 15 C -0.241 4.241 16 C 0.110 3.890 17 O -0.124 6.124 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.214 4.214 27 C -0.090 4.090 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.131 0.869 42 H 0.149 0.851 43 H 0.089 0.911 44 H 0.133 0.867 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.701 -22.309 -8.828 24.660 hybrid contribution 0.309 -0.134 0.833 0.899 sum 6.010 -22.443 -7.995 24.571 Atomic orbital electron populations 1.23262 0.76245 1.03546 1.02798 1.86497 1.23499 1.33754 1.84477 1.23614 0.91807 0.81509 0.73208 1.90727 1.66512 1.35979 1.42638 1.21219 0.87229 0.94051 0.98620 0.91305 1.21570 0.96775 1.03193 0.92948 1.21559 0.94412 0.98384 1.01051 1.21643 1.00116 0.98570 0.95537 1.22197 0.85621 1.01782 0.97358 1.61808 1.09274 1.32996 1.19920 1.20925 0.99123 0.94786 0.87076 1.18996 0.96778 0.94839 1.05976 1.20683 0.97185 0.92588 0.95859 1.21286 1.00719 0.96662 1.05475 1.19136 0.93408 0.84253 0.92231 1.83562 1.38873 1.17794 1.72169 1.20781 0.92895 0.95876 1.36819 0.87625 1.24464 0.97616 0.95135 0.96822 1.69650 1.26708 1.10616 1.44926 0.86182 0.82780 0.77788 0.80136 1.19942 1.20833 1.18379 1.20126 0.99300 0.93310 1.08652 1.20455 0.96666 0.94313 0.97582 0.91750 0.91829 0.88189 0.90074 0.90761 0.91144 0.91943 0.90571 0.91209 0.89027 0.94892 0.94498 0.90959 0.86944 0.85069 0.91112 0.86688 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.37 -3.91 10.57 -39.26 -0.41 -4.33 16 3 C 0.46 5.77 5.75 36.01 0.21 5.98 16 4 O -0.47 -7.56 15.20 -18.75 -0.29 -7.84 16 5 C 0.10 1.08 2.34 -68.87 -0.16 0.91 16 6 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 7 C -0.11 -0.97 5.36 -26.65 -0.14 -1.11 16 8 C -0.12 -0.89 6.00 -26.61 -0.16 -1.05 16 9 C -0.12 -1.12 6.09 -26.65 -0.16 -1.28 16 10 C 0.06 0.63 5.26 -3.83 -0.02 0.61 16 11 N -0.51 -6.68 4.17 -229.51 -0.96 -7.64 16 12 C 0.11 1.53 4.75 -4.98 -0.02 1.51 16 13 C -0.16 -2.87 5.15 -104.58 -0.54 -3.40 16 14 C -0.04 -0.88 9.69 -39.61 -0.38 -1.27 16 15 C -0.22 -5.06 9.17 -39.40 -0.36 -5.42 16 16 C 0.16 3.84 6.65 -39.10 -0.26 3.58 16 17 O -0.22 -5.91 8.59 0.05 0.00 -5.91 16 18 C -0.39 -11.21 9.95 30.89 0.31 -10.90 16 19 H 0.11 3.14 5.44 -52.49 -0.29 2.85 16 20 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 21 N -0.88 -25.93 13.96 55.48 0.77 -25.16 16 22 Si 0.91 22.03 28.62 -169.99 -4.86 17.16 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 26 C -0.19 -3.91 9.99 -39.39 -0.39 -4.30 16 27 C -0.07 -1.22 8.27 -39.61 -0.33 -1.55 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.14 6.04 -51.93 -0.31 0.82 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.04 0.47 7.94 -51.93 -0.41 0.05 16 40 H 0.07 1.09 5.62 -51.93 -0.29 0.80 16 41 H 0.11 2.18 8.06 -52.49 -0.42 1.76 16 42 H 0.13 3.16 5.64 -52.49 -0.30 2.86 16 43 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 45 H 0.11 1.50 7.74 -52.49 -0.41 1.09 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -32.02 365.28 -8.33 -40.35 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.64 Total: 2.50 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -1.45 Total: -14.64 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: -0.18 Total: -32.80 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.70 Total: -18.08 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.86 Total: 17.16 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.02 -8.33 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264572179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.730 kcal (2) G-P(sol) polarization free energy of solvation -32.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds