Wall clock time and date at job start Tue Mar 31 2020 12:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99705 * 2 1 4 4 O 1.20822 * 120.00049 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99653 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.45563 * 329.02885 * 5 3 2 7 7 C 1.53033 * 109.45895 * 89.00297 * 5 3 2 8 8 C 1.53123 * 109.27481 * 179.19177 * 7 5 3 9 9 C 1.53113 * 109.16208 * 302.34480 * 8 7 5 10 10 C 1.53042 * 109.27905 * 57.65818 * 9 8 7 11 11 N 1.46850 * 109.45827 * 209.05499 * 5 3 2 12 12 C 1.46899 * 111.00015 * 54.15099 * 11 5 3 13 13 C 1.50695 * 109.47235 * 199.99080 * 12 11 5 14 14 C 1.38303 * 119.93480 * 89.99521 * 13 12 11 15 15 C 1.38095 * 120.07208 * 180.02562 * 14 13 12 16 16 C 1.38882 * 119.93116 * 359.97438 * 15 14 13 17 17 O 1.35754 * 120.07176 * 179.97438 * 16 15 14 18 18 C 1.34824 * 116.99754 * 5.45982 * 17 16 15 19 19 H 1.07999 * 119.99986 * 355.08078 * 18 17 16 20 20 C 1.38652 * 120.00052 * 175.08302 * 18 17 16 21 21 N 1.31562 * 120.00432 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99908 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47147 * 269.99927 * 22 20 18 24 24 H 1.48504 * 109.47242 * 149.99596 * 22 20 18 25 25 H 1.48496 * 109.47086 * 29.99787 * 22 20 18 26 26 C 1.38886 * 119.86217 * 0.25176 * 16 15 14 27 27 C 1.38107 * 119.92552 * 359.49830 * 26 16 15 28 28 H 1.08999 * 109.46923 * 299.99302 * 1 2 3 29 29 H 1.08997 * 109.47175 * 59.99402 * 1 2 3 30 30 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.50491 * 59.25523 * 7 5 3 32 32 H 1.08998 * 109.51026 * 299.13520 * 7 5 3 33 33 H 1.09002 * 109.52047 * 182.44382 * 8 7 5 34 34 H 1.08993 * 109.52323 * 62.25523 * 8 7 5 35 35 H 1.09001 * 109.50980 * 297.71450 * 9 8 7 36 36 H 1.09001 * 109.54012 * 177.61306 * 9 8 7 37 37 H 1.08997 * 109.46675 * 180.80612 * 10 9 8 38 38 H 1.09001 * 109.45940 * 60.83075 * 10 9 8 39 39 H 1.08998 * 109.47548 * 79.98581 * 12 11 5 40 40 H 1.09000 * 109.47263 * 319.98849 * 12 11 5 41 41 H 1.07998 * 119.96251 * 0.04466 * 14 13 12 42 42 H 1.07998 * 120.03764 * 179.97438 * 15 14 13 43 43 H 0.96993 * 120.00437 * 180.02562 * 21 20 18 44 44 H 1.07997 * 120.03962 * 179.72537 * 26 16 15 45 45 H 1.07996 * 119.96018 * 180.23186 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9752 0.4138 0.5279 7 6 4.0762 1.2768 -1.4435 8 6 5.6041 1.3773 -1.4396 9 6 6.0224 2.6461 -0.6914 10 6 5.4561 2.6045 0.7298 11 7 3.9918 2.5091 0.6719 12 6 3.4045 2.6061 2.0149 13 6 3.4389 4.0404 2.4758 14 6 2.3742 4.8793 2.2011 15 6 2.4030 6.1944 2.6217 16 6 3.5024 6.6742 3.3216 17 8 3.5339 7.9666 3.7359 18 6 2.4208 8.7006 3.5361 19 1 1.5865 8.2799 2.9946 20 6 2.3474 9.9958 4.0257 21 7 1.2615 10.7123 3.8303 22 14 3.7908 10.7238 4.9616 23 1 3.6393 10.4326 6.4099 24 1 3.8253 12.1937 4.7531 25 1 5.0555 10.1237 4.4658 26 6 4.5721 5.8306 3.5918 27 6 4.5350 4.5151 3.1730 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.6568 2.1300 -1.9766 32 1 3.7736 0.3537 -1.9377 33 1 5.9688 1.4227 -2.4658 34 1 6.0253 0.5046 -0.9406 35 1 5.6336 3.5209 -1.2126 36 1 7.1101 2.7019 -0.6481 37 1 5.7401 3.5131 1.2607 38 1 5.8561 1.7371 1.2549 39 1 3.9764 1.9882 2.7072 40 1 2.3719 2.2585 1.9859 41 1 1.5193 4.5054 1.6574 42 1 1.5715 6.8491 2.4065 43 1 1.2102 11.6185 4.1725 44 1 5.4304 6.2019 4.1320 45 1 5.3649 3.8576 3.3861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264572179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:23 Heat of formation + Delta-G solvation = -99.694280 kcal Electronic energy + Delta-G solvation = -27053.978659 eV Core-core repulsion = 23229.591297 eV Total energy + Delta-G solvation = -3824.387362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.93340 -40.90908 -39.74902 -38.30153 -37.42624 -34.87763 -34.34967 -32.51677 -31.85145 -31.09819 -28.80606 -27.81908 -26.45985 -25.13856 -24.19425 -23.49490 -22.07346 -21.73179 -20.64134 -19.80489 -19.10063 -18.74100 -17.91919 -17.48651 -16.75706 -16.56122 -16.35905 -15.89105 -15.65717 -15.59949 -15.32748 -15.06118 -14.87601 -14.63714 -14.32711 -14.23315 -14.18546 -14.05247 -13.97828 -13.48698 -13.07864 -13.01004 -12.80800 -12.50256 -12.43246 -12.38470 -12.29425 -11.94769 -11.92901 -11.77015 -11.59094 -11.30101 -11.27049 -11.13130 -10.90096 -9.79951 -9.32245 -8.99102 -8.50786 -6.24110 0.56292 0.60401 1.11537 1.30699 1.35676 1.52224 1.60548 2.27915 2.63424 2.91222 3.09233 3.24670 3.65612 3.76269 3.90356 3.94674 4.04905 4.09334 4.15104 4.26448 4.28471 4.29866 4.32322 4.35727 4.51302 4.59039 4.59471 4.68824 4.77364 4.82343 4.85907 4.95162 4.98038 5.05507 5.21041 5.23392 5.28595 5.33515 5.38147 5.49303 5.55056 5.74480 5.81201 5.89556 5.94703 6.10886 6.23888 6.75121 6.82965 7.56597 8.61250 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018026 B = 0.003074 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.915662 B = 9106.838785 C =10040.135615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.458 3.542 4 O -0.519 6.519 5 C 0.100 3.900 6 H 0.097 0.903 7 C -0.105 4.105 8 C -0.110 4.110 9 C -0.120 4.120 10 C 0.055 3.945 11 N -0.537 5.537 12 C 0.111 3.889 13 C -0.139 4.139 14 C -0.054 4.054 15 C -0.240 4.240 16 C 0.123 3.877 17 O -0.242 6.242 18 C -0.401 4.401 19 H 0.074 0.926 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.976 3.024 23 H -0.264 1.264 24 H -0.267 1.267 25 H -0.261 1.261 26 C -0.187 4.187 27 C -0.055 4.055 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.136 0.864 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.285 0.715 44 H 0.135 0.865 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.395 -27.112 -8.478 29.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.278 6.278 3 C 0.301 3.699 4 O -0.406 6.406 5 C -0.009 4.009 6 H 0.114 0.886 7 C -0.143 4.143 8 C -0.147 4.147 9 C -0.158 4.158 10 C -0.072 4.072 11 N -0.264 5.264 12 C -0.016 4.016 13 C -0.141 4.141 14 C -0.073 4.073 15 C -0.259 4.259 16 C 0.074 3.926 17 O -0.150 6.150 18 C -0.478 4.478 19 H 0.092 0.908 20 C -0.190 4.190 21 N -0.566 5.566 22 Si 0.797 3.203 23 H -0.189 1.189 24 H -0.191 1.191 25 H -0.185 1.185 26 C -0.206 4.206 27 C -0.074 4.074 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.154 0.846 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.095 0.905 44 H 0.153 0.847 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.040 -26.128 -8.633 28.964 hybrid contribution -0.773 0.649 0.610 1.179 sum 8.267 -25.479 -8.023 27.963 Atomic orbital electron populations 1.23516 0.75018 1.05697 1.02208 1.86493 1.24720 1.32693 1.83855 1.24106 0.92660 0.81304 0.71844 1.90721 1.67595 1.37462 1.44867 1.21368 0.85945 0.93887 0.99710 0.88550 1.21603 0.97909 1.03175 0.91585 1.21548 0.93019 0.98216 1.01903 1.21646 1.01113 0.98497 0.94559 1.22283 0.84226 1.02137 0.98530 1.61626 1.10765 1.35078 1.18967 1.20851 0.99544 0.92354 0.88817 1.19477 0.95195 0.96244 1.03144 1.20745 0.98508 0.91781 0.96255 1.21208 1.00207 0.97714 1.06796 1.19661 0.95168 0.84044 0.93756 1.83501 1.37910 1.19256 1.74333 1.20683 0.93163 0.96760 1.37170 0.90797 1.25346 1.00578 0.95275 0.97785 1.69742 1.28794 1.11347 1.46756 0.85151 0.78770 0.77500 0.78850 1.18879 1.19142 1.18474 1.20517 0.98393 0.93895 1.07834 1.20939 0.97515 0.93522 0.95387 0.92643 0.92234 0.84640 0.92543 0.88726 0.89885 0.89792 0.93107 0.89272 0.90553 0.92204 0.91371 0.92014 0.87189 0.88194 0.90532 0.84720 0.82342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.63 16 2 O -0.36 -7.00 10.57 -51.42 -0.54 -7.54 16 3 C 0.46 10.88 5.75 71.24 0.41 11.29 16 4 O -0.52 -16.68 15.20 21.98 0.33 -16.34 16 5 C 0.10 1.88 2.34 44.19 0.10 1.98 16 6 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 7 C -0.10 -1.60 5.36 30.65 0.16 -1.44 16 8 C -0.11 -1.24 6.00 30.67 0.18 -1.05 16 9 C -0.12 -1.84 6.09 30.65 0.19 -1.65 16 10 C 0.05 0.98 5.26 86.33 0.45 1.43 16 11 N -0.54 -12.50 4.17 -880.04 -3.67 -16.17 16 12 C 0.11 2.85 4.75 85.56 0.41 3.25 16 13 C -0.14 -4.61 5.15 -19.84 -0.10 -4.71 16 14 C -0.05 -2.22 9.69 22.25 0.22 -2.00 16 15 C -0.24 -11.69 9.17 22.39 0.21 -11.48 16 16 C 0.12 6.03 6.65 22.58 0.15 6.18 16 17 O -0.24 -13.67 8.59 -22.72 -0.20 -13.87 16 18 C -0.40 -24.76 9.95 67.92 0.68 -24.09 16 19 H 0.07 4.86 5.44 -2.91 -0.02 4.85 16 20 C 0.01 0.49 5.49 84.83 0.47 0.96 16 21 N -0.93 -57.16 13.96 21.61 0.30 -56.85 16 22 Si 0.98 46.49 28.62 68.60 1.96 48.46 16 23 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.26 -12.30 7.11 99.48 0.71 -11.60 16 26 C -0.19 -7.25 9.99 22.39 0.22 -7.02 16 27 C -0.06 -1.71 8.27 22.25 0.18 -1.52 16 28 H 0.05 0.94 8.13 -2.39 -0.02 0.93 16 29 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 30 H 0.14 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.59 6.04 -2.39 -0.01 1.58 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 1.36 7.94 -2.39 -0.02 1.34 16 40 H 0.06 1.75 5.62 -2.39 -0.01 1.74 16 41 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 42 H 0.10 5.41 5.64 -2.91 -0.02 5.40 16 43 H 0.29 16.06 8.31 -92.71 -0.77 15.29 16 44 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 45 H 0.16 3.41 7.74 -2.91 -0.02 3.39 16 Total: -1.00 -75.64 365.28 4.30 -71.34 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.99 Total: 19.22 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 5.12 Total: -28.24 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -3.37 Total: -73.02 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -0.40 Total: -37.75 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.96 Total: 48.46 kcal Total: -75.64 4.30 -71.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264572179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.354 kcal (2) G-P(sol) polarization free energy of solvation -75.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds