Wall clock time and date at job start Tue Mar 31 2020 12:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00140 * 2 1 4 4 H 1.08994 * 109.47282 * 30.00115 * 3 2 1 5 5 C 1.52994 * 109.47229 * 269.99853 * 3 2 1 6 6 C 1.53003 * 109.47317 * 180.02562 * 5 3 2 7 7 C 1.52992 * 109.47261 * 59.99887 * 6 5 3 8 8 C 1.53003 * 109.47201 * 300.00376 * 7 6 5 9 9 C 1.52994 * 109.47320 * 59.99870 * 8 7 6 10 10 H 1.09000 * 109.47164 * 180.02562 * 9 8 7 11 11 N 1.46506 * 109.46953 * 60.00145 * 9 8 7 12 12 C 1.34775 * 119.99947 * 85.00547 * 11 9 8 13 13 O 1.21593 * 120.00003 * 359.97438 * 12 11 9 14 14 C 1.47533 * 119.99899 * 180.02562 * 12 11 9 15 15 C 1.39670 * 120.19846 * 359.70955 * 14 12 11 16 16 C 1.37826 * 119.91853 * 179.76958 * 15 14 12 17 17 C 1.38572 * 120.32420 * 0.54227 * 16 15 14 18 18 C 1.38020 * 120.40178 * 359.69116 * 17 16 15 19 19 C 1.38835 * 120.07245 * 0.04943 * 18 17 16 20 20 O 1.35518 * 120.16235 * 179.97438 * 19 18 17 21 21 C 1.34815 * 117.00106 * 354.40148 * 20 19 18 22 22 H 1.07998 * 120.00128 * 5.06303 * 21 20 19 23 23 C 1.38697 * 120.00015 * 185.05902 * 21 20 19 24 24 N 1.31520 * 120.00221 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99918 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47349 * 60.00168 * 25 23 21 27 27 H 1.48507 * 109.47226 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47279 * 299.99952 * 25 23 21 29 29 H 1.09002 * 109.46694 * 60.00275 * 1 2 3 30 30 H 1.08997 * 109.46867 * 299.99958 * 1 2 3 31 31 H 1.08999 * 109.46780 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47365 * 299.99870 * 5 3 2 33 33 H 1.09003 * 109.47210 * 59.99812 * 5 3 2 34 34 H 1.09006 * 109.46765 * 299.99576 * 6 5 3 35 35 H 1.09000 * 109.47164 * 180.02562 * 6 5 3 36 36 H 1.09002 * 109.47521 * 180.02562 * 7 6 5 37 37 H 1.09006 * 109.47484 * 60.00130 * 7 6 5 38 38 H 1.09003 * 109.47079 * 299.99570 * 8 7 6 39 39 H 1.09003 * 109.47364 * 180.02562 * 8 7 6 40 40 H 0.97002 * 119.99705 * 265.00041 * 11 9 8 41 41 H 1.08004 * 120.03992 * 0.02562 * 15 14 12 42 42 H 1.07998 * 119.83844 * 180.23555 * 16 15 14 43 43 H 1.08003 * 119.79566 * 179.71990 * 17 16 15 44 44 H 1.08000 * 119.96600 * 180.02562 * 18 17 16 45 45 H 0.97000 * 119.99743 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7713 -1.4424 6 6 2.8407 3.1688 -1.4425 7 6 4.1893 3.1260 -0.7214 8 6 3.9819 2.6601 0.7211 9 6 3.3590 1.2627 0.7211 10 1 3.2108 0.9309 1.7488 11 7 4.2528 0.3297 0.0304 12 6 5.2608 -0.2606 0.7026 13 8 5.4287 -0.0185 1.8823 14 6 6.1611 -1.1997 0.0068 15 6 5.9689 -1.4847 -1.3469 16 6 6.8164 -2.3592 -1.9924 17 6 7.8528 -2.9670 -1.3020 18 6 8.0520 -2.6988 0.0371 19 6 7.2116 -1.8164 0.7024 20 8 7.4051 -1.5521 2.0174 21 6 8.3579 -2.2649 2.6512 22 1 8.9816 -2.9480 2.0939 23 6 8.5370 -2.1209 4.0190 24 7 7.7771 -1.2893 4.6978 25 14 9.8576 -3.1081 4.8970 26 1 11.1869 -2.7761 4.3242 27 1 9.8446 -2.7751 6.3442 28 1 9.5909 -4.5583 4.7209 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.8830 1.0774 -1.9563 33 1 1.2569 1.8014 -1.9563 34 1 2.1757 3.8630 -0.9285 35 1 2.9881 3.5009 -2.4701 36 1 4.6330 4.1217 -0.7210 37 1 4.8543 2.4318 -1.2353 38 1 3.3170 3.3543 1.2351 39 1 4.9427 2.6300 1.2350 40 1 4.1189 0.1368 -0.9108 41 1 5.1598 -1.0171 -1.8883 42 1 6.6689 -2.5757 -3.0401 43 1 8.5091 -3.6544 -1.8152 44 1 8.8623 -3.1761 0.5682 45 1 7.9027 -1.1884 5.6543 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266025784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:34 Heat of formation + Delta-G solvation = -111.499875 kcal Electronic energy + Delta-G solvation = -27670.229168 eV Core-core repulsion = 23845.329878 eV Total energy + Delta-G solvation = -3824.899291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55330 -40.61463 -39.19945 -38.01501 -37.40557 -34.65517 -34.29805 -32.31912 -31.15645 -30.57005 -30.11808 -27.39002 -27.25907 -24.91995 -23.61960 -23.22608 -22.93449 -21.80568 -20.15267 -19.75543 -19.38508 -18.01070 -17.58599 -17.00740 -16.53875 -16.34756 -16.23868 -16.03521 -15.81680 -15.53142 -15.49187 -15.29244 -14.90910 -14.54115 -14.48306 -14.25189 -13.90299 -13.54562 -13.37139 -13.24392 -12.97845 -12.96541 -12.69048 -12.55204 -12.50232 -12.35067 -12.14761 -12.04760 -11.59037 -11.50334 -11.41343 -11.36496 -10.82025 -10.56164 -10.39739 -10.01065 -9.74981 -9.02785 -8.43722 -6.14985 0.14182 0.73185 1.31699 1.45144 1.49917 2.14046 2.16476 2.30999 2.75962 2.88858 3.23575 3.47956 3.64253 3.77086 3.97767 4.04201 4.08219 4.14775 4.17987 4.25595 4.29394 4.47290 4.51146 4.52312 4.57003 4.58810 4.64367 4.67912 4.86536 4.93615 4.97987 5.05177 5.05852 5.08572 5.14808 5.17854 5.26537 5.34369 5.46830 5.49212 5.61737 5.66459 5.69510 5.96675 6.17530 6.28896 6.74554 6.95157 7.54994 7.81795 8.76730 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014538 B = 0.003862 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.502062 B = 7248.356182 C = 8025.237960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.089 3.911 4 H 0.090 0.910 5 C -0.135 4.135 6 C -0.107 4.107 7 C -0.117 4.117 8 C -0.126 4.126 9 C 0.149 3.851 10 H 0.046 0.954 11 N -0.700 5.700 12 C 0.548 3.452 13 O -0.571 6.571 14 C -0.244 4.244 15 C -0.031 4.031 16 C -0.200 4.200 17 C -0.040 4.040 18 C -0.257 4.257 19 C 0.148 3.852 20 O -0.188 6.188 21 C -0.430 4.430 22 H 0.107 0.893 23 C -0.022 4.022 24 N -0.906 5.906 25 Si 1.023 2.977 26 H -0.253 1.253 27 H -0.273 1.273 28 H -0.254 1.254 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.032 0.968 40 H 0.406 0.594 41 H 0.153 0.847 42 H 0.164 0.836 43 H 0.155 0.845 44 H 0.124 0.876 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.143 5.402 -17.806 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.031 3.969 4 H 0.108 0.892 5 C -0.173 4.173 6 C -0.145 4.145 7 C -0.154 4.154 8 C -0.165 4.165 9 C 0.044 3.956 10 H 0.064 0.936 11 N -0.355 5.355 12 C 0.338 3.662 13 O -0.450 6.450 14 C -0.249 4.249 15 C -0.049 4.049 16 C -0.218 4.218 17 C -0.058 4.058 18 C -0.277 4.277 19 C 0.093 3.907 20 O -0.091 6.091 21 C -0.505 4.505 22 H 0.124 0.876 23 C -0.221 4.221 24 N -0.542 5.542 25 Si 0.841 3.159 26 H -0.177 1.177 27 H -0.198 1.198 28 H -0.179 1.179 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.051 0.949 40 H 0.245 0.755 41 H 0.171 0.829 42 H 0.182 0.818 43 H 0.173 0.827 44 H 0.142 0.858 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.085 5.665 -16.571 21.277 hybrid contribution 0.519 -0.337 0.956 1.139 sum -11.566 5.328 -15.615 20.149 Atomic orbital electron populations 1.22972 0.79558 1.03532 1.01044 1.87979 1.21403 1.28089 1.95230 1.22425 0.92183 0.85148 0.97168 0.89180 1.22019 1.02683 0.97607 0.95003 1.21482 0.95290 0.95998 1.01681 1.21519 0.98704 1.01396 0.93800 1.21863 1.00372 0.95113 0.99108 1.20982 0.89055 0.89652 0.95922 0.93573 1.45568 1.30158 1.45925 1.13871 1.18520 0.81133 0.80406 0.86123 1.90910 1.72566 1.63853 1.17668 1.19337 1.00628 1.08438 0.96490 1.21246 0.98108 0.95397 0.90178 1.21161 0.97621 1.01397 1.01631 1.21426 0.96432 0.96174 0.91793 1.21302 1.03702 1.05238 0.97414 1.20087 0.92887 0.92473 0.85251 1.84185 1.51849 1.55212 1.17841 1.22013 1.12792 1.23516 0.92213 0.87625 1.26774 1.01018 0.98251 0.96095 1.70330 1.39530 1.35762 1.08538 0.84622 0.76562 0.77963 0.76784 1.17693 1.19763 1.17857 0.91848 0.93637 0.89352 0.91542 0.89168 0.90377 0.89477 0.90811 0.92785 0.89196 0.94898 0.75486 0.82934 0.81813 0.82719 0.85841 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.82 113.37 1.23 1.64 16 2 O -0.41 -10.31 10.21 -148.98 -1.52 -11.83 16 3 C 0.09 1.94 2.34 30.59 0.07 2.02 16 4 H 0.09 1.62 7.79 -2.39 -0.02 1.60 16 5 C -0.14 -2.10 5.37 30.59 0.16 -1.93 16 6 C -0.11 -1.48 5.92 30.59 0.18 -1.30 16 7 C -0.12 -2.43 5.77 30.59 0.18 -2.25 16 8 C -0.13 -3.55 5.60 30.59 0.17 -3.37 16 9 C 0.15 4.72 2.47 44.99 0.11 4.83 16 10 H 0.05 1.87 7.58 -2.39 -0.02 1.85 16 11 N -0.70 -24.44 4.05 -445.69 -1.80 -26.24 16 12 C 0.55 26.50 7.73 86.69 0.67 27.17 16 13 O -0.57 -35.23 14.83 16.89 0.25 -34.98 16 14 C -0.24 -11.24 5.89 -19.99 -0.12 -11.36 16 15 C -0.03 -1.01 9.54 22.52 0.21 -0.79 16 16 C -0.20 -5.66 10.02 22.25 0.22 -5.44 16 17 C -0.04 -1.30 10.03 22.30 0.22 -1.08 16 18 C -0.26 -11.40 9.16 22.36 0.20 -11.19 16 19 C 0.15 7.95 6.66 22.91 0.15 8.11 16 20 O -0.19 -12.38 7.84 0.86 0.01 -12.37 16 21 C -0.43 -26.70 9.49 67.93 0.64 -26.05 16 22 H 0.11 5.88 5.21 -2.91 -0.02 5.86 16 23 C -0.02 -1.35 5.49 84.85 0.47 -0.89 16 24 N -0.91 -60.62 13.67 21.62 0.30 -60.33 16 25 Si 1.02 45.21 29.55 68.60 2.03 47.24 16 26 H -0.25 -10.33 7.11 99.48 0.71 -9.63 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 29 H 0.06 0.74 7.87 -2.39 -0.02 0.72 16 30 H 0.04 0.70 8.08 -2.39 -0.02 0.69 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.09 6.50 -2.38 -0.02 1.08 16 33 H 0.09 1.02 7.87 -2.39 -0.02 1.00 16 34 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 1.26 7.60 -2.38 -0.02 1.24 16 38 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.41 11.27 4.90 -92.71 -0.45 10.81 16 41 H 0.15 3.62 6.40 -2.91 -0.02 3.60 16 42 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 43 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 44 H 0.12 5.51 5.64 -2.91 -0.02 5.49 16 45 H 0.27 16.58 8.31 -92.71 -0.77 15.81 16 Total: -1.00 -91.13 362.49 4.60 -86.54 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: 0.56 Total: 33.86 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 4.78 Total: -21.89 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -1.51 Total: -86.57 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: -1.26 Total: -59.18 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -91.13 4.60 -86.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266025784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.963 kcal (2) G-P(sol) polarization free energy of solvation -91.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds