Wall clock time and date at job start Tue Mar 31 2020 12:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99756 * 2 1 4 4 H 1.08998 * 109.47409 * 329.99423 * 3 2 1 5 5 C 1.53004 * 109.47387 * 90.00116 * 3 2 1 6 6 C 1.52997 * 109.46914 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.47249 * 299.99709 * 6 5 3 8 8 C 1.53001 * 109.47425 * 60.00175 * 7 6 5 9 9 C 1.52997 * 109.46764 * 300.00122 * 8 7 6 10 10 H 1.09004 * 109.46930 * 179.97438 * 9 8 7 11 11 N 1.46494 * 109.47336 * 299.99412 * 9 8 7 12 12 C 1.34777 * 120.00404 * 275.00683 * 11 9 8 13 13 O 1.21596 * 119.99679 * 359.97438 * 12 11 9 14 14 C 1.47534 * 119.99924 * 180.02562 * 12 11 9 15 15 C 1.39656 * 120.20002 * 359.97438 * 14 12 11 16 16 C 1.37834 * 119.92099 * 179.97438 * 15 14 12 17 17 C 1.38567 * 120.32221 * 359.97438 * 16 15 14 18 18 C 1.38028 * 120.40419 * 0.02562 * 17 16 15 19 19 C 1.38837 * 120.06832 * 359.74126 * 18 17 16 20 20 O 1.35521 * 120.16264 * 180.27341 * 19 18 17 21 21 C 1.34817 * 116.99788 * 354.40930 * 20 19 18 22 22 H 1.08001 * 119.99881 * 5.05617 * 21 20 19 23 23 C 1.38701 * 119.99837 * 185.06149 * 21 20 19 24 24 N 1.31520 * 120.00147 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99897 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47379 * 89.99837 * 25 23 21 27 27 H 1.48501 * 109.47187 * 210.00258 * 25 23 21 28 28 H 1.48501 * 109.47361 * 329.99751 * 25 23 21 29 29 H 1.08998 * 109.47148 * 299.99892 * 1 2 3 30 30 H 1.08998 * 109.47278 * 60.00477 * 1 2 3 31 31 H 1.09004 * 109.46708 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46886 * 59.99306 * 5 3 2 33 33 H 1.08994 * 109.46495 * 299.99700 * 5 3 2 34 34 H 1.08998 * 109.47248 * 60.00341 * 6 5 3 35 35 H 1.09000 * 109.46720 * 179.97438 * 6 5 3 36 36 H 1.09006 * 109.47287 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.47251 * 299.99987 * 7 6 5 38 38 H 1.08994 * 109.46995 * 179.97438 * 8 7 6 39 39 H 1.08998 * 109.46533 * 59.99697 * 8 7 6 40 40 H 0.97007 * 119.99512 * 95.00177 * 11 9 8 41 41 H 1.08006 * 120.04595 * 0.02562 * 15 14 12 42 42 H 1.08004 * 119.83731 * 179.97438 * 16 15 14 43 43 H 1.08004 * 119.80065 * 180.02562 * 17 16 15 44 44 H 1.07996 * 119.96544 * 180.02562 * 18 17 16 45 45 H 0.96991 * 120.00155 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 2.8405 3.1689 1.4424 7 6 4.1892 3.1261 0.7214 8 6 3.9818 2.6601 -0.7211 9 6 3.3590 1.2627 -0.7210 10 1 3.2108 0.9308 -1.7487 11 7 4.2527 0.3298 -0.0303 12 6 5.2608 -0.2605 -0.7024 13 8 5.4283 -0.0190 -1.8823 14 6 6.1604 -1.2004 -0.0067 15 6 5.9714 -1.4812 1.3482 16 6 6.8150 -2.3606 1.9923 17 6 7.8508 -2.9692 1.3018 18 6 8.0498 -2.7014 -0.0376 19 6 7.2070 -1.8219 -0.7038 20 8 7.3973 -1.5619 -2.0202 21 6 8.4909 -2.0981 -2.5981 22 1 9.1238 -2.7696 -2.0370 23 6 8.8031 -1.7872 -3.9133 24 7 8.0321 -0.9697 -4.5967 25 14 10.3188 -2.5296 -4.7139 26 1 9.9560 -3.8142 -5.3647 27 1 10.8500 -1.5904 -5.7342 28 1 11.3556 -2.7744 -3.6793 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.8828 1.0775 1.9563 33 1 1.2568 1.8015 1.9562 34 1 2.1755 3.8630 0.9285 35 1 2.9878 3.5010 2.4700 36 1 4.6331 4.1217 0.7217 37 1 4.8541 2.4320 1.2354 38 1 4.9426 2.6301 -1.2349 39 1 3.3169 3.3542 -1.2350 40 1 4.1188 0.1369 0.9110 41 1 5.1648 -1.0104 1.8906 42 1 6.6679 -2.5765 3.0402 43 1 8.5065 -3.6573 1.8147 44 1 8.8591 -3.1800 -0.5689 45 1 8.2507 -0.7521 -5.5162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266025786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:40 Heat of formation + Delta-G solvation = -87.534324 kcal Electronic energy + Delta-G solvation = -27671.347550 eV Core-core repulsion = 23847.487484 eV Total energy + Delta-G solvation = -3823.860066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.13943 -39.09682 -37.62445 -36.39667 -36.20410 -33.17682 -32.28065 -30.85588 -30.16511 -28.96409 -28.78555 -26.48976 -25.32871 -23.38557 -22.47847 -22.19514 -21.38641 -20.30680 -18.82359 -17.97468 -17.70194 -16.70937 -16.21400 -15.69760 -15.43555 -14.94340 -14.80191 -14.56740 -14.23800 -14.07450 -13.99802 -13.72546 -13.65293 -13.26610 -13.05786 -12.70121 -12.45994 -12.25519 -12.16024 -11.98617 -11.71965 -11.66698 -11.30019 -11.12551 -11.05101 -10.85894 -10.73718 -10.63768 -10.62760 -10.43858 -10.40645 -9.50894 -9.47849 -8.83085 -8.73166 -8.39616 -8.19302 -7.24392 -6.39278 -3.99086 1.79647 2.38207 3.14838 3.15855 3.20450 3.58198 3.85012 3.85762 3.97762 4.59412 4.65386 4.72793 4.87087 5.02881 5.12770 5.13201 5.16626 5.23630 5.26905 5.28933 5.41056 5.51677 5.55032 5.55891 5.58445 5.65016 5.76313 5.80744 5.92303 5.92932 6.08098 6.11761 6.18580 6.28107 6.36861 6.39821 6.62966 6.76375 6.97940 7.05694 7.12532 7.20005 7.30299 7.34991 7.75865 7.97846 8.27136 9.00523 9.23571 9.74027 10.74650 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.003863 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.569644 B = 7246.628275 C = 8039.726556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.082 3.918 4 H 0.070 0.930 5 C -0.141 4.141 6 C -0.115 4.115 7 C -0.120 4.120 8 C -0.130 4.130 9 C 0.157 3.843 10 H 0.091 0.909 11 N -0.727 5.727 12 C 0.556 3.444 13 O -0.504 6.504 14 C -0.224 4.224 15 C -0.038 4.038 16 C -0.231 4.231 17 C -0.052 4.052 18 C -0.239 4.239 19 C 0.189 3.811 20 O -0.124 6.124 21 C -0.404 4.404 22 H 0.093 0.907 23 C 0.045 3.955 24 N -0.833 5.833 25 Si 0.940 3.060 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.267 1.267 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.391 0.609 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.131 0.869 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.295 5.529 12.621 17.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C 0.024 3.976 4 H 0.088 0.912 5 C -0.179 4.179 6 C -0.153 4.153 7 C -0.158 4.158 8 C -0.168 4.168 9 C 0.051 3.949 10 H 0.109 0.891 11 N -0.383 5.383 12 C 0.345 3.655 13 O -0.378 6.378 14 C -0.228 4.228 15 C -0.057 4.057 16 C -0.250 4.250 17 C -0.070 4.070 18 C -0.258 4.258 19 C 0.130 3.870 20 O -0.022 6.022 21 C -0.480 4.480 22 H 0.110 0.890 23 C -0.163 4.163 24 N -0.465 5.465 25 Si 0.764 3.236 26 H -0.198 1.198 27 H -0.202 1.202 28 H -0.191 1.191 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.227 0.773 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.148 0.852 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.195 5.788 11.258 16.899 hybrid contribution 0.442 -0.360 0.229 0.614 sum -10.753 5.428 11.486 16.644 Atomic orbital electron populations 1.22781 0.81580 1.02678 0.99579 1.88034 1.19102 1.27220 1.94948 1.22453 0.94544 0.84943 0.95675 0.91174 1.22026 1.01317 0.97480 0.97059 1.21504 0.97081 0.96051 1.00666 1.21529 0.96894 1.01391 0.95991 1.21927 1.02469 0.95445 0.97009 1.20800 0.86844 0.89600 0.97622 0.89063 1.45804 1.31819 1.47114 1.13522 1.18197 0.80221 0.80294 0.86745 1.90934 1.70549 1.61609 1.14693 1.18885 1.02263 1.07589 0.94105 1.20752 0.96917 0.95635 0.92348 1.20451 1.00322 1.04800 0.99437 1.20879 0.95856 0.96602 0.93705 1.21149 1.04223 1.04942 0.95505 1.19288 0.91659 0.90957 0.85109 1.84182 1.40572 1.61868 1.15595 1.21487 1.02288 1.27725 0.96454 0.88956 1.25365 0.98910 0.96361 0.95645 1.70131 1.36014 1.30402 1.09929 0.85746 0.79989 0.78705 0.79165 1.19792 1.20176 1.19098 0.94363 0.94150 0.89733 0.91101 0.91784 0.92015 0.91727 0.91921 0.91399 0.90182 0.91459 0.77306 0.87204 0.87368 0.87273 0.85150 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.38 16 2 O -0.37 -4.96 10.21 -35.23 -0.36 -5.32 16 3 C 0.08 0.96 2.34 -26.73 -0.06 0.90 16 4 H 0.07 0.71 7.79 -51.93 -0.40 0.31 16 5 C -0.14 -1.36 5.37 -26.73 -0.14 -1.51 16 6 C -0.12 -1.03 5.92 -26.74 -0.16 -1.19 16 7 C -0.12 -1.35 5.76 -26.73 -0.15 -1.51 16 8 C -0.13 -1.76 5.60 -26.73 -0.15 -1.91 16 9 C 0.16 2.37 2.47 -67.93 -0.17 2.20 16 10 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 11 N -0.73 -12.33 4.05 -54.85 -0.22 -12.56 16 12 C 0.56 12.55 7.73 -12.47 -0.10 12.45 16 13 O -0.50 -13.96 14.83 -16.57 -0.25 -14.21 16 14 C -0.22 -5.01 5.89 -104.81 -0.62 -5.63 16 15 C -0.04 -0.67 9.53 -39.20 -0.37 -1.05 16 16 C -0.23 -3.92 10.02 -39.61 -0.40 -4.32 16 17 C -0.05 -0.94 10.03 -39.54 -0.40 -1.34 16 18 C -0.24 -5.26 9.16 -39.44 -0.36 -5.62 16 19 C 0.19 4.82 6.66 -38.60 -0.26 4.56 16 20 O -0.12 -3.72 7.84 -21.06 -0.17 -3.89 16 21 C -0.40 -11.61 9.49 30.90 0.29 -11.32 16 22 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 23 C 0.04 1.26 5.49 -17.51 -0.10 1.17 16 24 N -0.83 -25.42 13.67 55.48 0.76 -24.66 16 25 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 28 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 29 H 0.04 0.29 7.87 -51.93 -0.41 -0.11 16 30 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.73 6.50 -51.93 -0.34 0.39 16 33 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.84 7.60 -51.93 -0.39 0.45 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.39 5.70 4.90 -40.82 -0.20 5.50 16 41 H 0.11 1.57 6.40 -52.48 -0.34 1.24 16 42 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 43 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 44 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -34.99 362.48 -8.23 -43.22 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.39 Total: 8.89 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.05 Total: -12.72 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.54 Total: -37.22 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.77 Total: -23.41 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.99 -8.23 -43.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266025786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.318 kcal (2) G-P(sol) polarization free energy of solvation -34.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds