Wall clock time and date at job start Tue Mar 31 2020 12:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00061 * 2 1 4 4 H 1.09008 * 109.46692 * 30.00360 * 3 2 1 5 5 C 1.52998 * 109.47445 * 270.00391 * 3 2 1 6 6 C 1.52996 * 109.47218 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47114 * 59.99694 * 6 5 3 8 8 C 1.52998 * 109.47485 * 299.99878 * 7 6 5 9 9 C 1.52997 * 109.47055 * 149.99982 * 3 2 1 10 10 H 1.08995 * 109.47597 * 60.00307 * 9 3 2 11 11 N 1.46500 * 109.47308 * 300.00345 * 9 3 2 12 12 C 1.34779 * 120.00399 * 155.00060 * 11 9 3 13 13 O 1.21588 * 119.99313 * 0.02562 * 12 11 9 14 14 C 1.47526 * 120.00126 * 179.97438 * 12 11 9 15 15 C 1.39664 * 120.20132 * 0.02562 * 14 12 11 16 16 C 1.37827 * 119.92349 * 179.72060 * 15 14 12 17 17 C 1.38572 * 120.32330 * 0.02562 * 16 15 14 18 18 C 1.38022 * 120.39963 * 0.02562 * 17 16 15 19 19 C 1.38835 * 120.07340 * 359.95700 * 18 17 16 20 20 O 1.35522 * 120.15960 * 180.02562 * 19 18 17 21 21 C 1.34817 * 117.00142 * 354.39545 * 20 19 18 22 22 H 1.07996 * 120.00199 * 5.07266 * 21 20 19 23 23 C 1.38699 * 119.99816 * 185.06119 * 21 20 19 24 24 N 1.31522 * 120.00229 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99739 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47019 * 60.00581 * 25 23 21 27 27 H 1.48501 * 109.46859 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47044 * 300.00612 * 25 23 21 29 29 H 1.09002 * 109.47316 * 299.99959 * 1 2 3 30 30 H 1.09003 * 109.47427 * 59.99937 * 1 2 3 31 31 H 1.08997 * 109.47193 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47058 * 59.99705 * 5 3 2 33 33 H 1.09000 * 109.46531 * 299.99802 * 5 3 2 34 34 H 1.09000 * 109.47145 * 299.99963 * 6 5 3 35 35 H 1.09000 * 109.47149 * 179.97438 * 6 5 3 36 36 H 1.09004 * 109.47177 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.47764 * 60.00312 * 7 6 5 38 38 H 1.09000 * 109.47248 * 300.00022 * 8 7 6 39 39 H 1.09001 * 109.47215 * 180.02562 * 8 7 6 40 40 H 0.97006 * 120.00203 * 334.99882 * 11 9 3 41 41 H 1.08002 * 120.03755 * 359.74636 * 15 14 12 42 42 H 1.07999 * 119.83819 * 180.02562 * 16 15 14 43 43 H 1.07997 * 119.80157 * 179.97438 * 17 16 15 44 44 H 1.08004 * 119.96331 * 179.97438 * 18 17 16 45 45 H 0.97002 * 119.99564 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4424 6 6 2.8393 3.1694 -1.4424 7 6 4.1879 3.1278 -0.7210 8 6 3.9805 2.6619 0.7215 9 6 3.3589 1.2632 0.7212 10 1 4.0242 0.5694 0.2075 11 7 3.1603 0.8170 2.1024 12 6 4.1701 0.2265 2.7717 13 8 5.2462 0.0645 2.2292 14 6 3.9703 -0.2223 4.1628 15 6 2.7361 -0.0378 4.7901 16 6 2.5540 -0.4645 6.0879 17 6 3.5902 -1.0760 6.7753 18 6 4.8156 -1.2641 6.1687 19 6 5.0172 -0.8411 4.8618 20 8 6.2195 -1.0254 4.2643 21 6 7.2137 -1.5198 5.0290 22 1 7.0122 -1.8266 6.0447 23 6 8.4953 -1.6346 4.5112 24 7 8.7408 -1.2607 3.2744 25 14 9.8726 -2.3203 5.5706 26 1 9.5311 -3.7025 5.9927 27 1 11.1355 -2.3385 4.7895 28 1 10.0462 -1.4645 6.7717 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.2567 1.8015 -1.9562 33 1 2.8829 1.0775 -1.9563 34 1 2.1737 3.8631 -0.9286 35 1 2.9875 3.5012 -2.4700 36 1 4.6306 4.1238 -0.7205 37 1 4.8536 2.4342 -1.2347 38 1 3.3149 3.3555 1.2353 39 1 4.9413 2.6326 1.2356 40 1 2.3019 0.9466 2.5354 41 1 1.9254 0.4383 4.2586 42 1 1.5989 -0.3215 6.5715 43 1 3.4383 -1.4067 7.7921 44 1 5.6185 -1.7412 6.7111 45 1 9.6372 -1.3407 2.9125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266025788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:45 Heat of formation + Delta-G solvation = -90.717629 kcal Electronic energy + Delta-G solvation = -27410.444554 eV Core-core repulsion = 23586.446450 eV Total energy + Delta-G solvation = -3823.998105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.97976 -39.11585 -37.67663 -36.40516 -36.21973 -33.62801 -32.29527 -30.80947 -30.12927 -28.91067 -28.66158 -26.46528 -25.33770 -23.48566 -22.42185 -22.04455 -21.18032 -20.13421 -19.61590 -18.01204 -17.61263 -16.69997 -16.14421 -16.02006 -15.23355 -14.97708 -14.61246 -14.44294 -14.27745 -14.05556 -13.88763 -13.80542 -13.65898 -13.43165 -13.16384 -12.80079 -12.52610 -12.44070 -12.25598 -11.82176 -11.67785 -11.32648 -11.20114 -11.14489 -11.06016 -10.87686 -10.84674 -10.76130 -10.68889 -10.45123 -10.32207 -9.64124 -9.50709 -8.83710 -8.73919 -8.43934 -8.21712 -7.26212 -6.40103 -4.00118 1.77460 2.36431 3.14268 3.16388 3.18714 3.62061 3.70584 3.83082 3.97059 4.58881 4.69788 4.79088 4.89063 4.99666 5.10879 5.12969 5.16760 5.21886 5.24911 5.27843 5.41056 5.43160 5.52867 5.55228 5.58823 5.67649 5.77620 5.84457 5.93539 5.95861 6.04986 6.10327 6.16570 6.17576 6.38387 6.42154 6.60978 6.74300 6.95834 7.07354 7.10682 7.15141 7.28395 7.33245 7.74000 7.96571 8.22384 8.99367 9.20220 9.72452 10.73623 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.003909 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.898226 B = 7161.328751 C = 8594.419019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.084 3.916 4 H 0.062 0.938 5 C -0.138 4.138 6 C -0.117 4.117 7 C -0.120 4.120 8 C -0.128 4.128 9 C 0.156 3.844 10 H 0.094 0.906 11 N -0.734 5.734 12 C 0.557 3.443 13 O -0.501 6.501 14 C -0.225 4.225 15 C -0.038 4.038 16 C -0.232 4.232 17 C -0.052 4.052 18 C -0.239 4.239 19 C 0.189 3.811 20 O -0.123 6.123 21 C -0.404 4.404 22 H 0.093 0.907 23 C 0.045 3.955 24 N -0.833 5.833 25 Si 0.940 3.060 26 H -0.269 1.269 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.389 0.611 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.131 0.869 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.325 7.301 -4.807 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C 0.026 3.974 4 H 0.080 0.920 5 C -0.176 4.176 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.167 4.167 9 C 0.051 3.949 10 H 0.112 0.888 11 N -0.388 5.388 12 C 0.346 3.654 13 O -0.375 6.375 14 C -0.230 4.230 15 C -0.057 4.057 16 C -0.251 4.251 17 C -0.070 4.070 18 C -0.258 4.258 19 C 0.130 3.870 20 O -0.021 6.021 21 C -0.480 4.480 22 H 0.110 0.890 23 C -0.163 4.163 24 N -0.464 5.464 25 Si 0.764 3.236 26 H -0.194 1.194 27 H -0.202 1.202 28 H -0.194 1.194 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.223 0.777 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.149 0.851 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.052 7.036 -5.642 16.697 hybrid contribution -0.144 -0.101 0.876 0.893 sum -14.196 6.935 -4.766 16.502 Atomic orbital electron populations 1.22779 0.81569 1.02700 0.99560 1.88037 1.19106 1.27236 1.94935 1.22438 0.94604 0.84725 0.95653 0.92028 1.22000 1.01524 0.97538 0.96547 1.21522 0.97027 0.96166 1.00709 1.21542 0.97030 1.01650 0.95573 1.21946 1.02259 0.95536 0.96928 1.20859 0.94944 0.96214 0.82906 0.88810 1.45794 1.15366 1.64006 1.13587 1.18189 0.83776 0.77423 0.85985 1.90937 1.24374 1.53739 1.68452 1.18876 0.94945 1.13903 0.95234 1.20742 0.94268 0.96147 0.94499 1.20445 0.99297 1.09469 0.95864 1.20880 0.92578 0.95304 0.98257 1.21150 0.98923 1.09531 0.96186 1.19281 0.87029 0.90468 0.90251 1.84180 1.14285 1.67619 1.36052 1.21444 0.87026 1.42573 0.96988 0.88984 1.25370 0.97584 0.96810 0.96496 1.70125 1.21892 1.41009 1.13364 0.85812 0.79281 0.79397 0.79102 1.19392 1.20177 1.19403 0.94167 0.94386 0.89700 0.91709 0.90635 0.92011 0.91603 0.91584 0.91316 0.92027 0.90218 0.77690 0.87212 0.87374 0.87251 0.85127 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.38 16 2 O -0.37 -5.01 10.21 -35.23 -0.36 -5.37 16 3 C 0.08 1.00 2.12 -26.73 -0.06 0.95 16 4 H 0.06 0.63 7.79 -51.92 -0.40 0.22 16 5 C -0.14 -1.40 5.54 -26.73 -0.15 -1.55 16 6 C -0.12 -1.07 5.92 -26.73 -0.16 -1.22 16 7 C -0.12 -1.35 5.92 -26.73 -0.16 -1.50 16 8 C -0.13 -1.76 5.50 -26.70 -0.15 -1.91 16 9 C 0.16 2.39 2.15 -67.90 -0.15 2.25 16 10 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 11 N -0.73 -12.48 4.89 -54.83 -0.27 -12.75 16 12 C 0.56 12.59 7.73 -12.47 -0.10 12.50 16 13 O -0.50 -13.94 14.83 -16.56 -0.25 -14.19 16 14 C -0.22 -5.02 5.89 -104.82 -0.62 -5.63 16 15 C -0.04 -0.67 9.53 -39.20 -0.37 -1.04 16 16 C -0.23 -3.89 10.02 -39.61 -0.40 -4.29 16 17 C -0.05 -0.93 10.03 -39.54 -0.40 -1.33 16 18 C -0.24 -5.23 9.16 -39.44 -0.36 -5.59 16 19 C 0.19 4.80 6.66 -38.60 -0.26 4.55 16 20 O -0.12 -3.70 7.84 -21.07 -0.17 -3.86 16 21 C -0.40 -11.61 9.49 30.90 0.29 -11.32 16 22 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 23 C 0.05 1.27 5.49 -17.51 -0.10 1.18 16 24 N -0.83 -25.38 13.67 55.48 0.76 -24.62 16 25 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 28 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 29 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.04 0.30 7.87 -51.93 -0.41 -0.11 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.56 7.87 -51.93 -0.41 0.16 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.39 5.48 6.63 -40.82 -0.27 5.21 16 41 H 0.11 1.52 6.40 -52.49 -0.34 1.19 16 42 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.13 2.82 5.64 -52.48 -0.30 2.52 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -35.11 366.92 -8.37 -43.48 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.57 Total: 8.64 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -2.02 Total: -12.60 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.49 Total: -37.37 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.77 Total: -23.42 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.11 -8.37 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266025788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.240 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds