Wall clock time and date at job start Tue Mar 31 2020 12:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00061 * 2 1 4 4 H 1.09008 * 109.46692 * 30.00360 * 3 2 1 5 5 C 1.52998 * 109.47445 * 270.00391 * 3 2 1 6 6 C 1.52996 * 109.47218 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47114 * 59.99694 * 6 5 3 8 8 C 1.52998 * 109.47485 * 299.99878 * 7 6 5 9 9 C 1.52997 * 109.47055 * 149.99982 * 3 2 1 10 10 H 1.08995 * 109.47597 * 60.00307 * 9 3 2 11 11 N 1.46500 * 109.47308 * 300.00345 * 9 3 2 12 12 C 1.34779 * 120.00399 * 155.00060 * 11 9 3 13 13 O 1.21588 * 119.99313 * 0.02562 * 12 11 9 14 14 C 1.47526 * 120.00126 * 179.97438 * 12 11 9 15 15 C 1.39664 * 120.20132 * 0.02562 * 14 12 11 16 16 C 1.37827 * 119.92349 * 179.72060 * 15 14 12 17 17 C 1.38572 * 120.32330 * 0.02562 * 16 15 14 18 18 C 1.38022 * 120.39963 * 0.02562 * 17 16 15 19 19 C 1.38835 * 120.07340 * 359.95700 * 18 17 16 20 20 O 1.35522 * 120.15960 * 180.02562 * 19 18 17 21 21 C 1.34817 * 117.00142 * 354.39545 * 20 19 18 22 22 H 1.07996 * 120.00199 * 5.07266 * 21 20 19 23 23 C 1.38699 * 119.99816 * 185.06119 * 21 20 19 24 24 N 1.31522 * 120.00229 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99739 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47019 * 60.00581 * 25 23 21 27 27 H 1.48501 * 109.46859 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47044 * 300.00612 * 25 23 21 29 29 H 1.09002 * 109.47316 * 299.99959 * 1 2 3 30 30 H 1.09003 * 109.47427 * 59.99937 * 1 2 3 31 31 H 1.08997 * 109.47193 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47058 * 59.99705 * 5 3 2 33 33 H 1.09000 * 109.46531 * 299.99802 * 5 3 2 34 34 H 1.09000 * 109.47145 * 299.99963 * 6 5 3 35 35 H 1.09000 * 109.47149 * 179.97438 * 6 5 3 36 36 H 1.09004 * 109.47177 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.47764 * 60.00312 * 7 6 5 38 38 H 1.09000 * 109.47248 * 300.00022 * 8 7 6 39 39 H 1.09001 * 109.47215 * 180.02562 * 8 7 6 40 40 H 0.97006 * 120.00203 * 334.99882 * 11 9 3 41 41 H 1.08002 * 120.03755 * 359.74636 * 15 14 12 42 42 H 1.07999 * 119.83819 * 180.02562 * 16 15 14 43 43 H 1.07997 * 119.80157 * 179.97438 * 17 16 15 44 44 H 1.08004 * 119.96331 * 179.97438 * 18 17 16 45 45 H 0.97002 * 119.99564 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4424 6 6 2.8393 3.1694 -1.4424 7 6 4.1879 3.1278 -0.7210 8 6 3.9805 2.6619 0.7215 9 6 3.3589 1.2632 0.7212 10 1 4.0242 0.5694 0.2075 11 7 3.1603 0.8170 2.1024 12 6 4.1701 0.2265 2.7717 13 8 5.2462 0.0645 2.2292 14 6 3.9703 -0.2223 4.1628 15 6 2.7361 -0.0378 4.7901 16 6 2.5540 -0.4645 6.0879 17 6 3.5902 -1.0760 6.7753 18 6 4.8156 -1.2641 6.1687 19 6 5.0172 -0.8411 4.8618 20 8 6.2195 -1.0254 4.2643 21 6 7.2137 -1.5198 5.0290 22 1 7.0122 -1.8266 6.0447 23 6 8.4953 -1.6346 4.5112 24 7 8.7408 -1.2607 3.2744 25 14 9.8726 -2.3203 5.5706 26 1 9.5311 -3.7025 5.9927 27 1 11.1355 -2.3385 4.7895 28 1 10.0462 -1.4645 6.7717 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.2567 1.8015 -1.9562 33 1 2.8829 1.0775 -1.9563 34 1 2.1737 3.8631 -0.9286 35 1 2.9875 3.5012 -2.4700 36 1 4.6306 4.1238 -0.7205 37 1 4.8536 2.4342 -1.2347 38 1 3.3149 3.3555 1.2353 39 1 4.9413 2.6326 1.2356 40 1 2.3019 0.9466 2.5354 41 1 1.9254 0.4383 4.2586 42 1 1.5989 -0.3215 6.5715 43 1 3.4383 -1.4067 7.7921 44 1 5.6185 -1.7412 6.7111 45 1 9.6372 -1.3407 2.9125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266025788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:44 Heat of formation + Delta-G solvation = -115.501397 kcal Electronic energy + Delta-G solvation = -27411.519259 eV Core-core repulsion = 23586.446450 eV Total energy + Delta-G solvation = -3825.072810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45989 -40.55670 -39.27672 -38.02096 -37.35006 -35.14197 -34.31882 -32.33026 -31.10393 -30.57202 -29.91066 -27.39836 -27.21548 -24.96740 -23.57720 -23.31870 -22.67211 -21.47327 -20.95318 -19.84901 -19.26547 -17.99027 -17.58033 -17.32127 -16.45435 -16.21948 -16.06350 -16.02076 -15.92557 -15.55975 -15.35673 -15.22809 -14.86216 -14.56813 -14.52932 -14.24822 -14.10458 -13.69692 -13.54743 -13.38847 -12.98012 -12.70550 -12.63268 -12.50517 -12.36696 -12.24412 -12.14921 -12.07701 -11.76082 -11.61706 -11.41981 -11.32790 -10.82505 -10.71486 -10.38609 -10.03069 -9.76497 -9.03352 -8.44185 -6.15655 0.13443 0.73059 1.31392 1.44853 1.49734 2.12383 2.15991 2.25819 2.74190 2.88235 3.23315 3.47253 3.61705 3.85530 3.98413 3.99840 4.06947 4.12941 4.17533 4.21612 4.28396 4.39536 4.44669 4.51828 4.54578 4.60623 4.65035 4.78854 4.88927 4.93053 4.94724 5.00297 5.06676 5.09218 5.12468 5.15080 5.20523 5.30019 5.43666 5.48695 5.61171 5.63236 5.69360 5.96077 6.17449 6.31175 6.72197 6.94608 7.52698 7.81176 8.76220 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.003909 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.898226 B = 7161.328751 C = 8594.419019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.410 6.410 3 C 0.093 3.907 4 H 0.095 0.905 5 C -0.136 4.136 6 C -0.107 4.107 7 C -0.119 4.119 8 C -0.122 4.122 9 C 0.151 3.849 10 H 0.043 0.957 11 N -0.708 5.708 12 C 0.549 3.451 13 O -0.570 6.570 14 C -0.245 4.245 15 C -0.029 4.029 16 C -0.200 4.200 17 C -0.040 4.040 18 C -0.258 4.258 19 C 0.148 3.852 20 O -0.189 6.189 21 C -0.430 4.430 22 H 0.107 0.893 23 C -0.022 4.022 24 N -0.906 5.906 25 Si 1.023 2.977 26 H -0.254 1.254 27 H -0.273 1.273 28 H -0.253 1.253 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.031 0.969 40 H 0.408 0.592 41 H 0.158 0.842 42 H 0.165 0.835 43 H 0.155 0.845 44 H 0.123 0.877 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.326 8.732 -2.792 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.330 6.330 3 C 0.035 3.965 4 H 0.113 0.887 5 C -0.174 4.174 6 C -0.145 4.145 7 C -0.157 4.157 8 C -0.161 4.161 9 C 0.046 3.954 10 H 0.062 0.938 11 N -0.362 5.362 12 C 0.339 3.661 13 O -0.449 6.449 14 C -0.250 4.250 15 C -0.048 4.048 16 C -0.218 4.218 17 C -0.058 4.058 18 C -0.277 4.277 19 C 0.093 3.907 20 O -0.092 6.092 21 C -0.506 4.506 22 H 0.124 0.876 23 C -0.222 4.222 24 N -0.542 5.542 25 Si 0.841 3.159 26 H -0.178 1.178 27 H -0.198 1.198 28 H -0.177 1.177 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.050 0.950 40 H 0.245 0.755 41 H 0.175 0.825 42 H 0.183 0.817 43 H 0.173 0.827 44 H 0.141 0.859 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.188 8.494 -3.594 21.289 hybrid contribution 0.918 -0.469 0.355 1.090 sum -18.270 8.025 -3.240 20.216 Atomic orbital electron populations 1.23007 0.79294 1.03580 1.01379 1.88005 1.21682 1.28089 1.95205 1.22396 0.92498 0.85144 0.96493 0.88734 1.22008 1.02500 0.97613 0.95262 1.21496 0.95351 0.95939 1.01684 1.21553 0.98751 1.01641 0.93773 1.21866 1.00227 0.95261 0.98713 1.21020 0.96994 0.95703 0.81699 0.93834 1.45558 1.14693 1.61913 1.14023 1.18536 0.83793 0.77225 0.86555 1.90918 1.27385 1.56630 1.69935 1.19333 0.96349 1.14014 0.95298 1.21274 0.93136 0.95103 0.95278 1.21172 1.00750 1.05096 0.94800 1.21435 0.90804 0.93491 1.00096 1.21303 1.00962 1.10342 0.95124 1.20101 0.86715 0.91608 0.92295 1.84188 1.16063 1.71147 1.37773 1.22018 0.87781 1.42998 0.97770 0.87593 1.26784 1.00403 0.97022 0.97942 1.70334 1.22449 1.45099 1.16276 0.84620 0.74977 0.79177 0.77147 1.17777 1.19773 1.17725 0.92343 0.92460 0.89474 0.88978 0.92901 0.89552 0.89756 0.90058 0.93630 0.89174 0.95005 0.75457 0.82503 0.81721 0.82749 0.85896 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.58 16 2 O -0.41 -10.37 10.21 -148.98 -1.52 -11.89 16 3 C 0.09 2.04 2.12 30.59 0.06 2.11 16 4 H 0.09 1.48 7.79 -2.38 -0.02 1.46 16 5 C -0.14 -2.49 5.54 30.59 0.17 -2.32 16 6 C -0.11 -1.67 5.92 30.59 0.18 -1.49 16 7 C -0.12 -2.69 5.92 30.59 0.18 -2.51 16 8 C -0.12 -3.49 5.50 30.61 0.17 -3.32 16 9 C 0.15 4.81 2.15 45.01 0.10 4.91 16 10 H 0.04 1.83 7.58 -2.39 -0.02 1.81 16 11 N -0.71 -24.37 4.89 -445.63 -2.18 -26.55 16 12 C 0.55 26.41 7.73 86.69 0.67 27.08 16 13 O -0.57 -35.30 14.83 16.90 0.25 -35.05 16 14 C -0.25 -11.15 5.89 -19.99 -0.12 -11.27 16 15 C -0.03 -0.93 9.53 22.52 0.21 -0.72 16 16 C -0.20 -5.49 10.02 22.25 0.22 -5.27 16 17 C -0.04 -1.28 10.03 22.30 0.22 -1.06 16 18 C -0.26 -11.36 9.16 22.36 0.20 -11.15 16 19 C 0.15 7.90 6.66 22.91 0.15 8.06 16 20 O -0.19 -12.43 7.84 0.79 0.01 -12.43 16 21 C -0.43 -26.71 9.49 67.93 0.64 -26.06 16 22 H 0.11 5.88 5.21 -2.91 -0.02 5.87 16 23 C -0.02 -1.36 5.49 84.85 0.47 -0.90 16 24 N -0.91 -60.71 13.67 21.62 0.30 -60.42 16 25 Si 1.02 45.20 29.55 68.60 2.03 47.23 16 26 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 29 H 0.06 0.68 8.09 -2.39 -0.02 0.66 16 30 H 0.06 0.66 7.87 -2.39 -0.02 0.64 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.24 7.87 -2.39 -0.02 1.23 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.41 10.45 6.63 -92.70 -0.61 9.84 16 41 H 0.16 3.41 6.40 -2.91 -0.02 3.39 16 42 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 43 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 44 H 0.12 5.47 5.64 -2.91 -0.02 5.45 16 45 H 0.27 16.61 8.31 -92.71 -0.77 15.84 16 Total: -1.00 -92.68 366.92 4.04 -88.64 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: 0.39 Total: 32.79 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 4.77 Total: -22.33 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -1.88 Total: -86.97 kcal Atomic # 8 Polarization: -58.10 SS G_CDS: -1.26 Total: -59.37 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -92.68 4.04 -88.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266025788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.857 kcal (2) G-P(sol) polarization free energy of solvation -92.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds